RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 CYSLTR2Q9NS75 346 aa12.98□□□□□ -0.33
CLSTN3-213ENST00000541953 RHCGQ9UBD6 479 aa12.98□□□□□ -0.33
CLSTN3-213ENST00000541953 STARD10Q9Y365 291 aa12.98□□□□□ -0.33
CLSTN3-213ENST00000541953 MED31Q9Y3C7 131 aa12.98□□□□□ -0.33
CLSTN3-213ENST00000541953 ADAM18Q9Y3Q7 739 aa12.98□□□□□ -0.33
CLSTN3-213ENST00000541953 TIMM10BQ9Y5J6 103 aa12.98□□□□□ -0.33
CLSTN3-213ENST00000541953 IGHV3-64DA0A0J9YX35 117 aa12.97□□□□□ -0.33
CLSTN3-213ENST00000541953 CEACAM18A8MTB9 384 aa12.97□□□□□ -0.33
CLSTN3-213ENST00000541953 H3BSA7 217 aa12.97□□□□□ -0.33
CLSTN3-213ENST00000541953 J3KTA2 159 aa12.97□□□□□ -0.33
CLSTN3-213ENST00000541953 RNASE1P07998 156 aaKnown RBP12.97□□□□□ -0.33
CLSTN3-213ENST00000541953 SELEP16581 610 aa12.97□□□□□ -0.33
CLSTN3-213ENST00000541953 MDKP21741 143 aaPredicted RBP12.97□□□□□ -0.33
CLSTN3-213ENST00000541953 YAP1P46937 504 aaKnown RBP12.97□□□□□ -0.33
CLSTN3-213ENST00000541953 HOXA4Q00056 320 aaPredicted RBP12.97□□□□□ -0.33
CLSTN3-213ENST00000541953 DEFA6Q01524 100 aa12.97□□□□□ -0.33
CLSTN3-213ENST00000541953 DBPQ10586 325 aaPredicted RBP12.97□□□□□ -0.33
CLSTN3-213ENST00000541953 TMEM155Q4W5P6 130 aa12.97□□□□□ -0.33
CLSTN3-213ENST00000541953 LEG1Q6P5S2 330 aa12.97□□□□□ -0.33
CLSTN3-213ENST00000541953 TREML4Q6UXN2 200 aa12.97□□□□□ -0.33
CLSTN3-213ENST00000541953 NRMQ8IXM6 262 aa12.97□□□□□ -0.33
CLSTN3-213ENST00000541953 OR5AS1Q8N127 324 aa12.97□□□□□ -0.33
CLSTN3-213ENST00000541953 OR13C2Q8NGS9 318 aa12.97□□□□□ -0.33
CLSTN3-213ENST00000541953 OR51A7Q8NH64 312 aa12.97□□□□□ -0.33
CLSTN3-213ENST00000541953 ZNF420Q8TAQ5 688 aaPredicted RBP12.97□□□□□ -0.33
CLSTN3-213ENST00000541953 DACT3Q96B18 629 aaPredicted RBP12.97□□□□□ -0.33
CLSTN3-213ENST00000541953 CMBLQ96DG6 245 aa12.97□□□□□ -0.33
CLSTN3-213ENST00000541953 BPIFA2Q96DR5 249 aa12.97□□□□□ -0.33
CLSTN3-213ENST00000541953 ZNF583Q96ND8 569 aa12.97□□□□□ -0.33
CLSTN3-213ENST00000541953 OR2V2Q96R30 315 aa12.97□□□□□ -0.33
CLSTN3-213ENST00000541953 RABEP2Q9H5N1 569 aa12.97□□□□□ -0.33
CLSTN3-213ENST00000541953 CGGBP1Q9UFW8 167 aaPredicted RBP12.97□□□□□ -0.33
CLSTN3-213ENST00000541953 FFAR1O14842 300 aa12.96□□□□□ -0.33
CLSTN3-213ENST00000541953 DOK2O60496 412 aa12.96□□□□□ -0.33
CLSTN3-213ENST00000541953 GPANK1O95872 356 aa12.96□□□□□ -0.33
CLSTN3-213ENST00000541953 DBHP09172 617 aa12.96□□□□□ -0.33
CLSTN3-213ENST00000541953 KITLGP21583 273 aa12.96□□□□□ -0.33
CLSTN3-213ENST00000541953 MSR1P21757 451 aa12.96□□□□□ -0.33
CLSTN3-213ENST00000541953 OMGP23515 440 aa12.96□□□□□ -0.33
CLSTN3-213ENST00000541953 HTR5AP47898 357 aa12.96□□□□□ -0.33
CLSTN3-213ENST00000541953 PRSS12P56730 875 aa12.96□□□□□ -0.33
CLSTN3-213ENST00000541953 PAX8Q06710 450 aa12.96□□□□□ -0.33
CLSTN3-213ENST00000541953 HLXQ14774 488 aaPredicted RBP12.96□□□□□ -0.33
CLSTN3-213ENST00000541953 LRRC23Q53EV4 343 aaPredicted RBP12.96□□□□□ -0.33
CLSTN3-213ENST00000541953 PDLIM3Q53GG5 364 aaPredicted RBP12.96□□□□□ -0.33
CLSTN3-213ENST00000541953 CYBRD1Q53TN4 286 aa12.96□□□□□ -0.33
CLSTN3-213ENST00000541953 MESTQ5EB52 335 aa12.96□□□□□ -0.33
CLSTN3-213ENST00000541953 FAM201AQ5SY85 155 aa12.96□□□□□ -0.33
CLSTN3-213ENST00000541953 RBMS3Q6XE24 437 aaKnown RBP12.96□□□□□ -0.33
CLSTN3-213ENST00000541953 VASH1Q7L8A9 365 aaPredicted RBP12.96□□□□□ -0.33
CLSTN3-213ENST00000541953 SPICQ8N5J4 248 aa12.96□□□□□ -0.33
CLSTN3-213ENST00000541953 OR10AD1Q8NGE0 317 aa12.96□□□□□ -0.33
CLSTN3-213ENST00000541953 RASSF5Q8WWW0 418 aa12.96□□□□□ -0.33
CLSTN3-213ENST00000541953 STON2Q8WXE9 905 aa12.96□□□□□ -0.33
CLSTN3-213ENST00000541953 ATP6V1G3Q96LB4 118 aa12.96□□□□□ -0.33
CLSTN3-213ENST00000541953 SAMD8Q96LT4 415 aa12.96□□□□□ -0.33
CLSTN3-213ENST00000541953 ELOVL3Q9HB03 270 aa12.96□□□□□ -0.33
CLSTN3-213ENST00000541953 STX18Q9P2W9 335 aaKnown RBP12.96□□□□□ -0.33
CLSTN3-213ENST00000541953 BAG5Q9UL15 447 aa12.96□□□□□ -0.33
CLSTN3-213ENST00000541953 H0YL77 283 aa12.95□□□□□ -0.34
CLSTN3-213ENST00000541953 TMEM178BH3BS89 294 aa12.95□□□□□ -0.34
CLSTN3-213ENST00000541953 CDC42EP2O14613 210 aa12.95□□□□□ -0.34
CLSTN3-213ENST00000541953 CYB5R3P00387 301 aaPredicted RBP12.95□□□□□ -0.34
CLSTN3-213ENST00000541953 CTLA4P16410 223 aa12.95□□□□□ -0.34
CLSTN3-213ENST00000541953 LIPAP38571 399 aa12.95□□□□□ -0.34
CLSTN3-213ENST00000541953 ARHGDIAP52565 204 aa12.95□□□□□ -0.34
CLSTN3-213ENST00000541953 C1orf94Q6P1W5 598 aa12.95□□□□□ -0.34
CLSTN3-213ENST00000541953 VTCN1Q7Z7D3 282 aa12.95□□□□□ -0.34
CLSTN3-213ENST00000541953 ALDH16A1Q8IZ83 802 aa12.95□□□□□ -0.34
CLSTN3-213ENST00000541953 PARP8Q8N3A8 854 aa12.95□□□□□ -0.34
CLSTN3-213ENST00000541953 KLHL36Q8N4N3 616 aa12.95□□□□□ -0.34
CLSTN3-213ENST00000541953 TSPEARQ8WU66 669 aa12.95□□□□□ -0.34
CLSTN3-213ENST00000541953 C10orf82Q8WW14 230 aa12.95□□□□□ -0.34
CLSTN3-213ENST00000541953 DYDC1Q8WWB3 177 aa12.95□□□□□ -0.34
CLSTN3-213ENST00000541953 PRRC1Q96M27 445 aa12.95□□□□□ -0.34
CLSTN3-213ENST00000541953 Q96M85 177 aa12.95□□□□□ -0.34
CLSTN3-213ENST00000541953 RBP7Q96R05 134 aa12.95□□□□□ -0.34
CLSTN3-213ENST00000541953 DIRC2Q96SL1 478 aa12.95□□□□□ -0.34
CLSTN3-213ENST00000541953 POLR2J2Q9GZM3 115 aaKnown RBP12.95□□□□□ -0.34
CLSTN3-213ENST00000541953 POLR2J3Q9H1A7 115 aaKnown RBP12.95□□□□□ -0.34
CLSTN3-213ENST00000541953 GCM1Q9NP62 436 aa12.95□□□□□ -0.34
CLSTN3-213ENST00000541953 TBCCD1Q9NVR7 557 aa12.95□□□□□ -0.34
CLSTN3-213ENST00000541953 PPP1R3CQ9UQK1 317 aa12.95□□□□□ -0.34
CLSTN3-213ENST00000541953 TRAV40A0A0B4J280 105 aa12.94□□□□□ -0.34
CLSTN3-213ENST00000541953 A0A0G2JND7 137 aa12.94□□□□□ -0.34
CLSTN3-213ENST00000541953 MLNRO43193 412 aa12.94□□□□□ -0.34
CLSTN3-213ENST00000541953 PLATP00750 562 aa12.94□□□□□ -0.34
CLSTN3-213ENST00000541953 WNT2P09544 360 aa12.94□□□□□ -0.34
CLSTN3-213ENST00000541953 GPR4P46093 362 aa12.94□□□□□ -0.34
CLSTN3-213ENST00000541953 PCBD1P61457 104 aa12.94□□□□□ -0.34
CLSTN3-213ENST00000541953 SF3A3Q12874 501 aaKnown RBP eCLIP12.94□□□□□ -0.346e-9■■■■■ 32.1
CLSTN3-213ENST00000541953 ZMAT1Q5H9K5 638 aa12.94□□□□□ -0.34
CLSTN3-213ENST00000541953 TBPL2Q6SJ96 375 aa12.94□□□□□ -0.34
CLSTN3-213ENST00000541953 TREML1Q86YW5 311 aa12.94□□□□□ -0.34
CLSTN3-213ENST00000541953 POU5F2Q8N7G0 328 aa12.94□□□□□ -0.34
CLSTN3-213ENST00000541953 TPD52L3Q96J77 140 aa12.94□□□□□ -0.34
CLSTN3-213ENST00000541953 MRI1Q9BV20 369 aa12.94□□□□□ -0.34
CLSTN3-213ENST00000541953 IL19Q9UHD0 177 aa12.94□□□□□ -0.34
CLSTN3-213ENST00000541953 NDRG4Q9ULP0 352 aaKnown RBP12.94□□□□□ -0.34
CLSTN3-213ENST00000541953 GMNCA6NCL1 334 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms