RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 GJC3Q8NFK1 279 aa15.61■□□□□ 0.09
CLIP1-215ENST00000541108 MBD3L2Q8NHZ7 208 aaPredicted RBP15.61■□□□□ 0.09
CLIP1-215ENST00000541108 FAM57AQ8TBR7 257 aa15.61■□□□□ 0.09
CLIP1-215ENST00000541108 CHCHD6Q9BRQ6 235 aa15.61■□□□□ 0.09
CLIP1-215ENST00000541108 MALT1Q9UDY8 824 aa15.61■□□□□ 0.09
CLIP1-215ENST00000541108 EMC9Q9Y3B6 208 aa15.61■□□□□ 0.09
CLIP1-215ENST00000541108 GRIP1Q9Y3R0 1128 aa15.61■□□□□ 0.09
CLIP1-215ENST00000541108 TRBV2A0A0J9YWF9 115 aa15.6■□□□□ 0.09
CLIP1-215ENST00000541108 TRDV1A0A1B0GX56 115 aa15.6■□□□□ 0.09
CLIP1-215ENST00000541108 GPRIN2O60269 458 aa15.6■□□□□ 0.09
CLIP1-215ENST00000541108 GPX5O75715 221 aa15.6■□□□□ 0.09
CLIP1-215ENST00000541108 CNOT4O95628 575 aaKnown RBP15.6■□□□□ 0.09
CLIP1-215ENST00000541108 TPOP07202 933 aa15.6■□□□□ 0.09
CLIP1-215ENST00000541108 CST2P09228 141 aa15.6■□□□□ 0.09
CLIP1-215ENST00000541108 EDNRAP25101 427 aa15.6■□□□□ 0.09
CLIP1-215ENST00000541108 VBP1P61758 197 aa15.6■□□□□ 0.09
CLIP1-215ENST00000541108 ENDOGQ14249 297 aaKnown RBP15.6■□□□□ 0.09
CLIP1-215ENST00000541108 FBXW9Q5XUX1 488 aa15.6■□□□□ 0.09
CLIP1-215ENST00000541108 CORO6Q6QEF8 472 aa15.6■□□□□ 0.09
CLIP1-215ENST00000541108 ARL9Q6T311 187 aa15.6■□□□□ 0.09
CLIP1-215ENST00000541108 SYT9Q86SS6 491 aa15.6■□□□□ 0.09
CLIP1-215ENST00000541108 RNF166Q96A37 237 aaPredicted RBP15.6■□□□□ 0.09
CLIP1-215ENST00000541108 SLAMF6Q96DU3 332 aa15.6■□□□□ 0.09
CLIP1-215ENST00000541108 PGLYRP3Q96LB9 341 aa15.6■□□□□ 0.09
CLIP1-215ENST00000541108 PTTG2Q9NZH5 202 aa15.6■□□□□ 0.09
CLIP1-215ENST00000541108 SVILO95425 2214 aa15.6■□□□□ 0.09
CLIP1-215ENST00000541108 PIEZO2Q9H5I5 2752 aa15.6■□□□□ 0.09
CLIP1-215ENST00000541108 LOC100506127A0A0U1RQW1 187 aa15.6■□□□□ 0.09
CLIP1-215ENST00000541108 ZNF878C9JN71 531 aa15.6■□□□□ 0.09
CLIP1-215ENST00000541108 OPRL1P41146 370 aa15.6■□□□□ 0.09
CLIP1-215ENST00000541108 LSM3P62310 102 aaKnown RBP15.6■□□□□ 0.09
CLIP1-215ENST00000541108 RPS25P62851 125 aaKnown RBP15.6■□□□□ 0.09
CLIP1-215ENST00000541108 HIST1H3AP68431 136 aa15.6■□□□□ 0.09
CLIP1-215ENST00000541108 NFATC3Q12968 1075 aa15.6■□□□□ 0.09
CLIP1-215ENST00000541108 EIF2S3LQ2VIR3 472 aaKnown RBP15.6■□□□□ 0.09
CLIP1-215ENST00000541108 HIST2H3PS2Q5TEC6 136 aa15.6■□□□□ 0.09
CLIP1-215ENST00000541108 HIST2H3AQ71DI3 136 aa15.6■□□□□ 0.09
CLIP1-215ENST00000541108 ZC3HAV1Q7Z2W4 902 aaKnown RBP15.6■□□□□ 0.09
CLIP1-215ENST00000541108 HIST2H2ABQ8IUE6 130 aaPredicted RBP15.6■□□□□ 0.09
CLIP1-215ENST00000541108 SLC22A24Q8N4F4 322 aa15.6■□□□□ 0.09
CLIP1-215ENST00000541108 GHSRQ92847 366 aa15.6■□□□□ 0.09
CLIP1-215ENST00000541108 TMEM203Q969S6 136 aa15.6■□□□□ 0.09
CLIP1-215ENST00000541108 CENPOQ9BU64 300 aa15.6■□□□□ 0.09
CLIP1-215ENST00000541108 NIPAL2Q9H841 368 aa15.6■□□□□ 0.09
CLIP1-215ENST00000541108 LRP12Q9Y561 859 aa15.6■□□□□ 0.09
CLIP1-215ENST00000541108 RPP14O95059 124 aaKnown RBP15.59■□□□□ 0.09
CLIP1-215ENST00000541108 FARS2O95363 451 aaKnown RBP15.59■□□□□ 0.09
CLIP1-215ENST00000541108 IGHV3-9P01782 118 aa15.59■□□□□ 0.09
CLIP1-215ENST00000541108 CRHP06850 196 aa15.59■□□□□ 0.09
CLIP1-215ENST00000541108 ABOP16442 354 aa15.59■□□□□ 0.09
CLIP1-215ENST00000541108 UGT2B10P36537 528 aa15.59■□□□□ 0.09
CLIP1-215ENST00000541108 PSMB10P40306 273 aa15.59■□□□□ 0.09
CLIP1-215ENST00000541108 CCR9P51686 369 aa15.59■□□□□ 0.09
CLIP1-215ENST00000541108 NCS1P62166 190 aa15.59■□□□□ 0.09
CLIP1-215ENST00000541108 TUBA1BP68363 451 aa15.59■□□□□ 0.09
CLIP1-215ENST00000541108 ALKBH1Q13686 389 aaKnown RBP15.59■□□□□ 0.09
CLIP1-215ENST00000541108 ZNF544Q6NX49 715 aa15.59■□□□□ 0.09
CLIP1-215ENST00000541108 CFAP77Q6ZQR2 320 aa15.59■□□□□ 0.09
CLIP1-215ENST00000541108 TUBA1AQ71U36 451 aa15.59■□□□□ 0.09
CLIP1-215ENST00000541108 UBE2J2Q8N2K1 259 aa15.59■□□□□ 0.09
CLIP1-215ENST00000541108 C9orf106Q8NAJ2 232 aa15.59■□□□□ 0.09
CLIP1-215ENST00000541108 ZFP3Q96NJ6 502 aa15.59■□□□□ 0.09
CLIP1-215ENST00000541108 TMED9Q9BVK6 235 aa15.59■□□□□ 0.09
CLIP1-215ENST00000541108 EXOSC4Q9NPD3 245 aaKnown RBP15.59■□□□□ 0.09
CLIP1-215ENST00000541108 CENPMQ9NSP4 180 aa15.59■□□□□ 0.09
CLIP1-215ENST00000541108 GSTK1Q9Y2Q3 226 aa15.59■□□□□ 0.09
CLIP1-215ENST00000541108 NCOA6Q14686 2063 aaPredicted RBP15.59■□□□□ 0.09
CLIP1-215ENST00000541108 BSNQ9UPA5 3926 aa15.59■□□□□ 0.09
CLIP1-215ENST00000541108 FREM1Q5H8C1 2179 aa15.59■□□□□ 0.09
CLIP1-215ENST00000541108 A0A1W2PPW3 197 aa15.58■□□□□ 0.08
CLIP1-215ENST00000541108 RER1O15258 196 aa15.58■□□□□ 0.08
CLIP1-215ENST00000541108 SERPINA3P01011 423 aa15.58■□□□□ 0.08
CLIP1-215ENST00000541108 H2BFMP0C1H6 154 aa15.58■□□□□ 0.08
CLIP1-215ENST00000541108 PCSK6P29122 969 aa15.58■□□□□ 0.08
CLIP1-215ENST00000541108 TIMP3P35625 211 aa15.58■□□□□ 0.08
CLIP1-215ENST00000541108 GDI2P50395 445 aaKnown RBP15.58■□□□□ 0.08
CLIP1-215ENST00000541108 SH3BGRP55822 239 aaPredicted RBP15.58■□□□□ 0.08
CLIP1-215ENST00000541108 NANOS3P60323 173 aaKnown RBP15.58■□□□□ 0.08
CLIP1-215ENST00000541108 PCBD1P61457 104 aa15.58■□□□□ 0.08
CLIP1-215ENST00000541108 FABP5Q01469 135 aa15.58■□□□□ 0.08
CLIP1-215ENST00000541108 SLC3A1Q07837 685 aa15.58■□□□□ 0.08
CLIP1-215ENST00000541108 SPCS2Q15005 226 aa15.58■□□□□ 0.08
CLIP1-215ENST00000541108 RTL6Q6ICC9 239 aa15.58■□□□□ 0.08
CLIP1-215ENST00000541108 OR7E24Q6IFN5 339 aa15.58■□□□□ 0.08
CLIP1-215ENST00000541108 USP43Q70EL4 1123 aa15.58■□□□□ 0.08
CLIP1-215ENST00000541108 CD163Q86VB7 1156 aa15.58■□□□□ 0.08
CLIP1-215ENST00000541108 LRRC18Q8N456 261 aa15.58■□□□□ 0.08
CLIP1-215ENST00000541108 OR10S1Q8NGN2 331 aa15.58■□□□□ 0.08
CLIP1-215ENST00000541108 OR6K3Q8NGY3 331 aa15.58■□□□□ 0.08
CLIP1-215ENST00000541108 OR2G2Q8NGZ5 317 aa15.58■□□□□ 0.08
CLIP1-215ENST00000541108 HTRA1Q92743 480 aa15.58■□□□□ 0.08
CLIP1-215ENST00000541108 KCNN2Q9H2S1 579 aa15.58■□□□□ 0.08
CLIP1-215ENST00000541108 C12orf49Q9H741 205 aa15.58■□□□□ 0.08
CLIP1-215ENST00000541108 PNRC2Q9NPJ4 139 aaKnown RBP15.58■□□□□ 0.08
CLIP1-215ENST00000541108 DDX28Q9NUL7 540 aaKnown RBP15.58■□□□□ 0.08
CLIP1-215ENST00000541108 ASF1BQ9NVP2 202 aa15.58■□□□□ 0.08
CLIP1-215ENST00000541108 TXNL4BQ9NX01 149 aaKnown RBP15.58■□□□□ 0.08
CLIP1-215ENST00000541108 FRRS1LQ9P0K9 344 aa15.58■□□□□ 0.08
CLIP1-215ENST00000541108 DOCK7Q96N67 2140 aa15.58■□□□□ 0.08
CLIP1-215ENST00000541108 MAP1BP46821 2468 aaKnown RBP15.58■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms