RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 PRMT2P55345 433 aa10.14□□□□□ -0.79
SYNE1-237ENST00000539504 EGR4Q05215 589 aa10.14□□□□□ -0.79
SYNE1-237ENST00000539504 FJX1Q86VR8 437 aa10.14□□□□□ -0.79
SYNE1-237ENST00000539504 LRRC75AQ8NAA5 344 aa10.14□□□□□ -0.79
SYNE1-237ENST00000539504 NUDCD2Q8WVJ2 157 aa10.14□□□□□ -0.79
SYNE1-237ENST00000539504 CERS4Q9HA82 394 aa10.14□□□□□ -0.79
SYNE1-237ENST00000539504 SLC17A5Q9NRA2 495 aa10.14□□□□□ -0.79
SYNE1-237ENST00000539504 CENPMQ9NSP4 180 aa10.14□□□□□ -0.79
SYNE1-237ENST00000539504 EMC9Q9Y3B6 208 aa10.14□□□□□ -0.79
SYNE1-237ENST00000539504 TMEM200CA6NKL6 621 aa10.14□□□□□ -0.79
SYNE1-237ENST00000539504 STK17BO94768 372 aa10.14□□□□□ -0.79
SYNE1-237ENST00000539504 ASAH2BP0C7U1 165 aa10.14□□□□□ -0.79
SYNE1-237ENST00000539504 RORAP35398 523 aa10.14□□□□□ -0.79
SYNE1-237ENST00000539504 SERTAD2Q14140 314 aa10.14□□□□□ -0.79
SYNE1-237ENST00000539504 ZNF345Q14585 488 aa10.14□□□□□ -0.79
SYNE1-237ENST00000539504 INPP5JQ15735 1006 aaPredicted RBP10.14□□□□□ -0.79
SYNE1-237ENST00000539504 OR10R2Q8NGX6 335 aa10.14□□□□□ -0.79
SYNE1-237ENST00000539504 RSC1A1Q92681 617 aa10.14□□□□□ -0.79
SYNE1-237ENST00000539504 MMABQ96EY8 250 aaPredicted RBP10.14□□□□□ -0.79
SYNE1-237ENST00000539504 PHYHIPLQ96FC7 376 aa10.14□□□□□ -0.79
SYNE1-237ENST00000539504 CNTNAP3BQ96NU0 1288 aa10.14□□□□□ -0.79
SYNE1-237ENST00000539504 PLA2G2FQ9BZM2 168 aa10.14□□□□□ -0.79
SYNE1-237ENST00000539504 OR8D2Q9GZM6 311 aa10.14□□□□□ -0.79
SYNE1-237ENST00000539504 SLCO5A1Q9H2Y9 848 aa10.14□□□□□ -0.79
SYNE1-237ENST00000539504 CHMP1AQ9HD42 196 aaPredicted RBP10.14□□□□□ -0.79
SYNE1-237ENST00000539504 GDE1Q9NZC3 331 aa10.14□□□□□ -0.79
SYNE1-237ENST00000539504 CSAG2Q9Y5P2 127 aa10.14□□□□□ -0.79
SYNE1-237ENST00000539504 ERCC1P07992 297 aaPredicted RBP10.13□□□□□ -0.79
SYNE1-237ENST00000539504 TPT1P13693 172 aaKnown RBP10.13□□□□□ -0.79
SYNE1-237ENST00000539504 HOXB2P14652 356 aa10.13□□□□□ -0.79
SYNE1-237ENST00000539504 MEF2DQ14814 521 aa10.13□□□□□ -0.79
SYNE1-237ENST00000539504 EMC4Q5J8M3 183 aa10.13□□□□□ -0.79
SYNE1-237ENST00000539504 NKAPLQ5M9Q1 402 aa10.13□□□□□ -0.79
SYNE1-237ENST00000539504 OR4K17Q8NGC6 315 aa10.13□□□□□ -0.79
SYNE1-237ENST00000539504 ASB5Q8WWX0 329 aa10.13□□□□□ -0.79
SYNE1-237ENST00000539504 USB1Q9BQ65 265 aaKnown RBP10.13□□□□□ -0.79
SYNE1-237ENST00000539504 KLHDC3Q9BQ90 382 aa10.13□□□□□ -0.79
SYNE1-237ENST00000539504 SELENOIQ9C0D9 397 aa10.13□□□□□ -0.79
SYNE1-237ENST00000539504 IGFLR1Q9H665 355 aa10.13□□□□□ -0.79
SYNE1-237ENST00000539504 IL23AQ9NPF7 189 aa10.13□□□□□ -0.79
SYNE1-237ENST00000539504 BIN3Q9NQY0 253 aa10.13□□□□□ -0.79
SYNE1-237ENST00000539504 MKL2Q9ULH7 1088 aa10.13□□□□□ -0.79
SYNE1-237ENST00000539504 MYO9BQ13459 2157 aa10.13□□□□□ -0.79
SYNE1-237ENST00000539504 A0A1B0GTI1 187 aa10.13□□□□□ -0.79
SYNE1-237ENST00000539504 SULT2B1O00204 365 aa10.13□□□□□ -0.79
SYNE1-237ENST00000539504 SLC25A4P12235 298 aa10.13□□□□□ -0.79
SYNE1-237ENST00000539504 MNX1P50219 401 aaPredicted RBP10.13□□□□□ -0.79
SYNE1-237ENST00000539504 RAB13P51153 203 aa10.13□□□□□ -0.79
SYNE1-237ENST00000539504 C1orf61Q13536 156 aa10.13□□□□□ -0.79
SYNE1-237ENST00000539504 PLEKHN1Q494U1 663 aaPredicted RBP10.13□□□□□ -0.79
SYNE1-237ENST00000539504 SLC22A6Q4U2R8 563 aa10.13□□□□□ -0.79
SYNE1-237ENST00000539504 VWA2Q5GFL6 755 aa10.13□□□□□ -0.79
SYNE1-237ENST00000539504 UQCC3Q6UW78 93 aa10.13□□□□□ -0.79
SYNE1-237ENST00000539504 RNF128Q8TEB7 428 aa10.13□□□□□ -0.79
SYNE1-237ENST00000539504 HERVK_113Q902F9 699 aa10.13□□□□□ -0.79
SYNE1-237ENST00000539504 SCARF2Q96GP6 870 aaPredicted RBP10.13□□□□□ -0.79
SYNE1-237ENST00000539504 HHLA2Q9UM44 414 aa10.13□□□□□ -0.79
SYNE1-237ENST00000539504 C9orf170A2RU37 121 aa10.13□□□□□ -0.79
SYNE1-237ENST00000539504 CDC14CA4D256 554 aa10.13□□□□□ -0.79
SYNE1-237ENST00000539504 OR6C76A6NM76 312 aa10.13□□□□□ -0.79
SYNE1-237ENST00000539504 EIF1AXP47813 144 aaKnown RBP10.13□□□□□ -0.79
SYNE1-237ENST00000539504 DMWDQ09019 674 aa10.13□□□□□ -0.79
SYNE1-237ENST00000539504 ACKR1Q16570 336 aa10.13□□□□□ -0.79
SYNE1-237ENST00000539504 ALG11Q2TAA5 492 aa10.13□□□□□ -0.79
SYNE1-237ENST00000539504 CHRDL2Q6WN34 429 aa10.13□□□□□ -0.79
SYNE1-237ENST00000539504 ELP5Q8TE02 316 aa10.13□□□□□ -0.79
SYNE1-237ENST00000539504 HRH4Q9H3N8 390 aa10.13□□□□□ -0.79
SYNE1-237ENST00000539504 PRODH2Q9UF12 536 aa10.13□□□□□ -0.79
SYNE1-237ENST00000539504 A0A1W2PPC1 479 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 RAB19A4D1S5 217 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 C17orf51A8MQB3 221 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 UTS2O95399 124 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 ZNF735P0CB33 412 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 MYOGP15173 224 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 CD96P40200 585 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 GPR3P46089 330 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 HOXA1P49639 335 aaPredicted RBP10.12□□□□□ -0.79
SYNE1-237ENST00000539504 CCINQ13939 588 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 HIST2H2ABQ8IUE6 130 aaPredicted RBP10.12□□□□□ -0.79
SYNE1-237ENST00000539504 KDM8Q8N371 416 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 ASB17Q8WXJ9 295 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 BMFQ96LC9 184 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 CMSS1Q9BQ75 279 aaKnown RBP10.12□□□□□ -0.79
SYNE1-237ENST00000539504 ABHD6Q9BV23 337 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 IFT22Q9H7X7 185 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 DNAH14Q0VDD8 3507 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 SEC16AO15027 2179 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 C17orf105B2RV13 164 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 MPZL1O95297 269 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 ZNF823P16415 610 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 PSMB6P28072 239 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 NTSR1P30989 418 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 HRH1P35367 487 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 SERPINF1P36955 418 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 CBX5P45973 191 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 SRSF3P84103 164 aaKnown RBP10.12□□□□□ -0.79
SYNE1-237ENST00000539504 SWI5Q1ZZU3 235 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 HFEQ30201 348 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 TMEM196Q5HYL7 178 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 ASPHD2Q6ICH7 369 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms