RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 MARS2Q96GW9 593 aaKnown RBP12.65□□□□□ -0.38
USP28-204ENST00000537642 NMNAT3Q96T66 252 aa12.65□□□□□ -0.38
USP28-204ENST00000537642 IFT27Q9BW83 186 aa12.65□□□□□ -0.38
USP28-204ENST00000537642 TRIM15Q9C019 465 aa12.65□□□□□ -0.38
USP28-204ENST00000537642 VNN3Q9NY84 501 aa12.65□□□□□ -0.38
USP28-204ENST00000537642 SLCO1C1Q9NYB5 712 aa12.65□□□□□ -0.38
USP28-204ENST00000537642 IGLV1-36A0A0B4J1U3 117 aa12.64□□□□□ -0.39
USP28-204ENST00000537642 C17orf100A8MU93 164 aa12.64□□□□□ -0.39
USP28-204ENST00000537642 A8MV72 311 aaPredicted RBP12.64□□□□□ -0.39
USP28-204ENST00000537642 ACOT8O14734 319 aa12.64□□□□□ -0.39
USP28-204ENST00000537642 SGCEO43556 437 aa12.64□□□□□ -0.39
USP28-204ENST00000537642 DOK2O60496 412 aa12.64□□□□□ -0.39
USP28-204ENST00000537642 NGFP01138 241 aa12.64□□□□□ -0.39
USP28-204ENST00000537642 IGHV3-13P01766 116 aa12.64□□□□□ -0.39
USP28-204ENST00000537642 ZNF16P17020 682 aaPredicted RBP12.64□□□□□ -0.39
USP28-204ENST00000537642 ZNF23P17027 643 aa12.64□□□□□ -0.39
USP28-204ENST00000537642 COL8A2P25067 703 aa12.64□□□□□ -0.39
USP28-204ENST00000537642 CRABP1P29762 137 aa12.64□□□□□ -0.39
USP28-204ENST00000537642 MPV17P39210 176 aa12.64□□□□□ -0.39
USP28-204ENST00000537642 MAGEB1P43366 347 aa12.64□□□□□ -0.39
USP28-204ENST00000537642 HTR5AP47898 357 aa12.64□□□□□ -0.39
USP28-204ENST00000537642 GLO1Q04760 184 aa12.64□□□□□ -0.39
USP28-204ENST00000537642 AQP6Q13520 282 aa12.64□□□□□ -0.39
USP28-204ENST00000537642 KCNMB1Q16558 191 aa12.64□□□□□ -0.39
USP28-204ENST00000537642 ZNF718Q3SXZ3 478 aa12.64□□□□□ -0.39
USP28-204ENST00000537642 FAM98BQ52LJ0 330 aaKnown RBP12.64□□□□□ -0.39
USP28-204ENST00000537642 CYB5R2Q6BCY4 276 aa12.64□□□□□ -0.39
USP28-204ENST00000537642 LEG1Q6P5S2 330 aa12.64□□□□□ -0.39
USP28-204ENST00000537642 VASH1Q7L8A9 365 aaPredicted RBP12.64□□□□□ -0.39
USP28-204ENST00000537642 JAZF1Q86VZ6 243 aa12.64□□□□□ -0.39
USP28-204ENST00000537642 OR6V1Q8N148 313 aa12.64□□□□□ -0.39
USP28-204ENST00000537642 LINC00471Q8N535 108 aa12.64□□□□□ -0.39
USP28-204ENST00000537642 OR4K13Q8NH42 304 aa12.64□□□□□ -0.39
USP28-204ENST00000537642 ABHD4Q8TB40 342 aa12.64□□□□□ -0.39
USP28-204ENST00000537642 C4orf45Q96LM5 186 aa12.64□□□□□ -0.39
USP28-204ENST00000537642 SNX18Q96RF0 628 aa12.64□□□□□ -0.39
USP28-204ENST00000537642 THTPAQ9BU02 230 aa12.64□□□□□ -0.39
USP28-204ENST00000537642 OR2J1Q9GZK6 312 aa12.64□□□□□ -0.39
USP28-204ENST00000537642 EGLN3Q9H6Z9 239 aa12.64□□□□□ -0.39
USP28-204ENST00000537642 SRA1Q9HD15 236 aaKnown RBP12.64□□□□□ -0.39
USP28-204ENST00000537642 HINT3Q9NQE9 182 aaKnown RBP12.64□□□□□ -0.39
USP28-204ENST00000537642 ASH2LQ9UBL3 628 aa12.64□□□□□ -0.39
USP28-204ENST00000537642 GPR160Q9UJ42 338 aa12.64□□□□□ -0.39
USP28-204ENST00000537642 NDRG4Q9ULP0 352 aaKnown RBP12.64□□□□□ -0.39
USP28-204ENST00000537642 B9D1Q9UPM9 204 aa12.64□□□□□ -0.39
USP28-204ENST00000537642 SVEP1Q4LDE5 3571 aa12.63□□□□□ -0.39
USP28-204ENST00000537642 LRP5LA4QPB2 252 aa12.63□□□□□ -0.39
USP28-204ENST00000537642 IDH3BO43837 385 aa12.63□□□□□ -0.39
USP28-204ENST00000537642 LILRA1O75019 489 aa12.63□□□□□ -0.39
USP28-204ENST00000537642 UBOX5O94941 541 aa12.63□□□□□ -0.39
USP28-204ENST00000537642 CCNB2O95067 398 aa12.63□□□□□ -0.39
USP28-204ENST00000537642 RENP00797 406 aa12.63□□□□□ -0.39
USP28-204ENST00000537642 GASTP01350 101 aa12.63□□□□□ -0.39
USP28-204ENST00000537642 TACSTD2P09758 323 aa12.63□□□□□ -0.39
USP28-204ENST00000537642 GAAP10253 952 aa12.63□□□□□ -0.39
USP28-204ENST00000537642 GZMKP49863 264 aa12.63□□□□□ -0.39
USP28-204ENST00000537642 PPP1CBP62140 327 aa12.63□□□□□ -0.39
USP28-204ENST00000537642 MEP1BQ16820 701 aa12.63□□□□□ -0.39
USP28-204ENST00000537642 CCDC92Q53HC0 331 aaPredicted RBP12.63□□□□□ -0.39
USP28-204ENST00000537642 MBNL2Q5VZF2 373 aaKnown RBP12.63□□□□□ -0.39
USP28-204ENST00000537642 OR2T5Q6IEZ7 315 aa12.63□□□□□ -0.39
USP28-204ENST00000537642 DNM1P34Q6PK57 102 aa12.63□□□□□ -0.39
USP28-204ENST00000537642 UNQ6126/PRO20091Q6UXV3 157 aa12.63□□□□□ -0.39
USP28-204ENST00000537642 OR2T29Q8NH02 315 aa12.63□□□□□ -0.39
USP28-204ENST00000537642 KLF14Q8TD94 323 aaPredicted RBP12.63□□□□□ -0.39
USP28-204ENST00000537642 SNX33Q8WV41 574 aa12.63□□□□□ -0.39
USP28-204ENST00000537642 IPCEF1Q8WWN9 437 aaPredicted RBP12.63□□□□□ -0.39
USP28-204ENST00000537642 RDH5Q92781 318 aa12.63□□□□□ -0.39
USP28-204ENST00000537642 YIPF5Q969M3 257 aa12.63□□□□□ -0.39
USP28-204ENST00000537642 ELOVL3Q9HB03 270 aa12.63□□□□□ -0.39
USP28-204ENST00000537642 PLEK2Q9NYT0 353 aa12.63□□□□□ -0.39
USP28-204ENST00000537642 CDH10Q9Y6N8 788 aa12.63□□□□□ -0.39
USP28-204ENST00000537642 OR6C68A6NDL8 312 aa12.62□□□□□ -0.39
USP28-204ENST00000537642 OR6C6A6NF89 314 aa12.62□□□□□ -0.39
USP28-204ENST00000537642 ABHD16AO95870 558 aa12.62□□□□□ -0.39
USP28-204ENST00000537642 ACHEP22303 614 aa12.62□□□□□ -0.39
USP28-204ENST00000537642 NOS3P29474 1203 aa12.62□□□□□ -0.39
USP28-204ENST00000537642 GCH1P30793 250 aa12.62□□□□□ -0.39
USP28-204ENST00000537642 CENPAP49450 140 aa12.62□□□□□ -0.39
USP28-204ENST00000537642 TRAP1Q12931 704 aaKnown RBP12.62□□□□□ -0.39
USP28-204ENST00000537642 TRIP10Q15642 601 aa12.62□□□□□ -0.39
USP28-204ENST00000537642 MOGQ16653 247 aa12.62□□□□□ -0.39
USP28-204ENST00000537642 CLEC12AQ5QGZ9 265 aa12.62□□□□□ -0.39
USP28-204ENST00000537642 SLC35F1Q5T1Q4 408 aa12.62□□□□□ -0.39
USP28-204ENST00000537642 TMEM154Q6P9G4 183 aa12.62□□□□□ -0.39
USP28-204ENST00000537642 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.62□□□□□ -0.39
USP28-204ENST00000537642 ZBTB46Q86UZ6 589 aa12.62□□□□□ -0.39
USP28-204ENST00000537642 HIPK1Q86Z02 1210 aa12.62□□□□□ -0.39
USP28-204ENST00000537642 C1orf174Q8IYL3 243 aa12.62□□□□□ -0.39
USP28-204ENST00000537642 AQP11Q8NBQ7 271 aa12.62□□□□□ -0.39
USP28-204ENST00000537642 NPEPL1Q8NDH3 523 aa12.62□□□□□ -0.39
USP28-204ENST00000537642 SDR9C7Q8NEX9 313 aa12.62□□□□□ -0.39
USP28-204ENST00000537642 OR52E2Q8NGJ4 325 aa12.62□□□□□ -0.39
USP28-204ENST00000537642 OR8D4Q8NGM9 314 aa12.62□□□□□ -0.39
USP28-204ENST00000537642 SLC7A6Q92536 515 aa12.62□□□□□ -0.39
USP28-204ENST00000537642 POP5Q969H6 163 aaKnown RBP12.62□□□□□ -0.39
USP28-204ENST00000537642 MSI2Q96DH6 328 aaKnown RBP12.62□□□□□ -0.39
USP28-204ENST00000537642 LRGUKQ96M69 825 aa12.62□□□□□ -0.39
USP28-204ENST00000537642 SOX7Q9BT81 388 aa12.62□□□□□ -0.39
USP28-204ENST00000537642 PLA2G12AQ9BZM1 189 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms