RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 SPIN4Q56A73 249 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 TMEM255AQ5JRV8 349 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 C1orf141Q5JVX7 400 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 SIRPB2Q5JXA9 342 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 GLRA4Q5JXX5 417 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 FAM182AQ5T1J6 154 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 PIP5KL1Q5T9C9 394 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 LRRC38Q5VT99 294 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 C9orf135Q5VTT2 229 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 PRAMEF8Q5VWM4 474 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 PRAMEF7Q5VXH5 474 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 LIPKQ5VXJ0 399 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 NKAIN2Q5VXU1 208 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 NSUN5P2Q63ZY6 315 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 STEAP4Q687X5 459 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 TANGO2Q6ICL3 276 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 OR52W1Q6IF63 320 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 FAM53AQ6NSI3 398 aaPredicted RBP2.2□□□□□ -2.06
SKA3-207ENST00000536239 TRNP1Q6NT89 227 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 DNAJC24Q6P3W2 148 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 MOXD1Q6UVY6 613 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 CES3Q6UWW8 571 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 ALKAL2Q6UX46 152 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 IL34Q6ZMJ4 242 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 DPY19L2P2Q6ZN68 376 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 HIST2H3AQ71DI3 136 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 NDUFAF7Q7L592 441 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 HIST3H2AQ7L7L0 130 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 ABHD12BQ7Z5M8 362 aaPredicted RBP2.2□□□□□ -2.06
SKA3-207ENST00000536239 PXKQ7Z7A4 578 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 ABI3BPQ7Z7G0 1075 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 TMEM135Q86UB9 458 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 CYP4Z1Q86W10 505 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 COMMD2Q86X83 199 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 CATSPERDQ86XM0 798 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 NRROSQ86YC3 692 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 WDFY1Q8IWB7 410 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 LAX1Q8IWV1 398 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 ZNF679Q8IYX0 411 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 SELENOHQ8IZQ5 122 aaKnown RBP2.2□□□□□ -2.06
SKA3-207ENST00000536239 BLIDQ8IZY5 108 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 GPC2Q8N158 579 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 MTURNQ8N3F0 131 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 Q8N402 240 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 LRRC52Q8N7C0 313 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 BHLHE23Q8NDY6 225 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 FAM71CQ8NEG0 241 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 OR52E4Q8NGH9 312 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 OR56B1Q8NGI3 324 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 OR5M8Q8NGP6 311 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 OR2T35Q8NGX2 323 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 OR6K3Q8NGY3 331 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 OR8U1Q8NH10 309 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 NUBPLQ8TB37 319 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 M1APQ8TC57 530 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 CD99L2Q8TCZ2 262 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 MAPK15Q8TD08 544 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 ZNF675Q8TD23 568 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 CD200R1Q8TD46 325 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 NPRL2Q8WTW4 380 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 ORAOV1Q8WV07 137 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 SMPDL3AQ92484 453 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 PHYHIPQ92561 330 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 CNOT9Q92600 299 aaKnown RBP2.2□□□□□ -2.06
SKA3-207ENST00000536239 RAD54LQ92698 747 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 HAS2Q92819 552 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 CDS1Q92903 461 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 HIST1H2ACQ93077 130 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 FBXO32Q969P5 355 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 ERGIC1Q969X5 290 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 HIST1H2BAQ96A08 127 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 SLC25A46Q96AG3 418 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 MRGPRFQ96AM1 343 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 PYCR2Q96C36 320 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 ARSGQ96EG1 525 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 ELMOD3Q96FG2 381 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 CERS2Q96G23 380 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 SLC41A3Q96GZ6 507 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 SAMD8Q96LT4 415 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 TMEM56Q96MV1 263 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 MS4A4EQ96PG1 132 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 ALKBH3Q96Q83 286 aaPredicted RBP2.2□□□□□ -2.06
SKA3-207ENST00000536239 OR2M4Q96R27 311 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 OR2A7Q96R45 310 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 STACQ99469 402 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 VPS25Q9BRG1 176 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 REEP2Q9BRK0 252 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 URM1Q9BTM9 101 aaKnown RBP2.2□□□□□ -2.06
SKA3-207ENST00000536239 THUMPD3Q9BV44 507 aaKnown RBP2.2□□□□□ -2.06
SKA3-207ENST00000536239 FICDQ9BVA6 458 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 RIOK2Q9BVS4 552 aaKnown RBP2.2□□□□□ -2.06
SKA3-207ENST00000536239 GLIS2Q9BZE0 524 aaPredicted RBP2.2□□□□□ -2.06
SKA3-207ENST00000536239 TKTL2Q9H0I9 626 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 GABARAPL1Q9H0R8 117 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 SLITRK2Q9H156 845 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 OR51E2Q9H255 320 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 DPAGT1Q9H3H5 408 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 WDR55Q9H6Y2 383 aaPredicted RBP2.2□□□□□ -2.06
SKA3-207ENST00000536239 MAGIXQ9H6Y5 334 aa2.2□□□□□ -2.06
SKA3-207ENST00000536239 TPT1P8Q9HAU6 139 aa2.2□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms