RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 HPRP00739 348 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 APOC1P02654 83 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 HTR1AP08908 422 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 DBTP11182 482 aaKnown RBP2.78□□□□□ -1.96
USP48-215ENST00000534705 COX4I1P13073 169 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 GNSP15586 552 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 SPNP16150 400 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 GOT1P17174 413 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 XRCC1P18887 633 aaPredicted RBP2.78□□□□□ -1.96
USP48-215ENST00000534705 RAB3AP20336 220 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 PCMT1P22061 227 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 PSMA2P25787 234 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 OXTRP30559 389 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 SSTR1P30872 391 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 OR1E1P30953 314 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 SFTPDP35247 375 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 ADRA1AP35348 466 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 NUP62P37198 522 aaPredicted RBP2.78□□□□□ -1.96
USP48-215ENST00000534705 HTR2BP41595 481 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 RGRP47804 291 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 SLC1A6P48664 564 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 MARCKSL1P49006 195 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 PLA2G16P53816 162 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 EIF3EP60228 445 aaKnown RBP2.78□□□□□ -1.96
USP48-215ENST00000534705 GABARAPL2P60520 117 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 VBP1P61758 197 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 FLI1Q01543 452 aaPredicted RBP2.78□□□□□ -1.96
USP48-215ENST00000534705 PRKCDQ05655 676 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 SCRN3Q0VDG4 424 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 BST1Q10588 318 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 CNTN1Q12860 1018 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 FADDQ13158 208 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 CEACAM7Q14002 265 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 ELAVL3Q14576 367 aaKnown RBP2.78□□□□□ -1.96
USP48-215ENST00000534705 TMED2Q15363 201 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 TSC22D1Q15714 1073 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 ATP6AP1Q15904 470 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 MS4A18Q3C1V0 323 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 ARMCX4Q5H9R4 360 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 ZNF311Q5JNZ3 666 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 TEX30Q5JUR7 227 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 ATP1A1-AS1Q5TC04 95 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 HIST2H2AA3Q6FI13 130 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 PNCKQ6P2M8 343 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 SIGLEC15Q6ZMC9 328 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 TIFABQ6ZNK6 161 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 GALNT10Q86SR1 603 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 TRIM69Q86WT6 500 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 PGAM4Q8N0Y7 254 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 CADM2Q8N3J6 435 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 EIF4E3Q8N5X7 224 aaKnown RBP2.78□□□□□ -1.96
USP48-215ENST00000534705 POM121L12Q8N7R1 296 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 TEX47Q8TBZ9 253 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 LRRC20Q8TCA0 184 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 PDCD6IPQ8WUM4 868 aaKnown RBP2.78□□□□□ -1.96
USP48-215ENST00000534705 DNAJA4Q8WW22 397 aaPredicted RBP2.78□□□□□ -1.96
USP48-215ENST00000534705 SLC7A6Q92536 515 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 GTF2H4Q92759 462 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 RFT1Q96AA3 541 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 ISG20Q96AZ6 181 aaKnown RBP2.78□□□□□ -1.96
USP48-215ENST00000534705 RAD51AP1Q96B01 352 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 TESCQ96BS2 214 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 FAF2Q96CS3 445 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 YIPF6Q96EC8 236 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 C19orf60Q96EN9 201 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 CNRIP1Q96F85 164 aaPredicted RBP2.78□□□□□ -1.96
USP48-215ENST00000534705 LURAP1Q96LR2 239 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 SDHCQ99643 169 aaPredicted RBP2.78□□□□□ -1.96
USP48-215ENST00000534705 GAL3ST1Q99999 423 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 PELOQ9BRX2 385 aaKnown RBP2.78□□□□□ -1.96
USP48-215ENST00000534705 WRAP53Q9BUR4 548 aaKnown RBP2.78□□□□□ -1.96
USP48-215ENST00000534705 MRPL13Q9BYD1 178 aaKnown RBP2.78□□□□□ -1.96
USP48-215ENST00000534705 SLC19A3Q9BZV2 496 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 C20orf27Q9GZN8 174 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 ADNPQ9H2P0 1102 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 PPA2Q9H2U2 334 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 TUBB1Q9H4B7 451 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 METTL7AQ9H8H3 244 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 HEXA-AS1Q9H8Q6 139 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 SGK2Q9HBY8 427 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 APMAPQ9HDC9 416 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 IFT46Q9NQC8 304 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 PLSCR3Q9NRY6 295 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 C20orf96Q9NUD7 363 aaPredicted RBP2.78□□□□□ -1.96
USP48-215ENST00000534705 BFARQ9NZS9 450 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 EMC3Q9P0I2 261 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 CD300AQ9UGN4 299 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 KLHL21Q9UJP4 597 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 ZNF221Q9UK13 617 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 ZNF490Q9ULM2 529 aaPredicted RBP2.78□□□□□ -1.96
USP48-215ENST00000534705 SCML1Q9UN30 329 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 OR10H1Q9Y4A9 318 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 FKBP7Q9Y680 259 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 ATMQ13315 3056 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 MGAQ8IWI9 3026 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 PKD1L2Q7Z442 2459 aa2.77□□□□□ -1.97
USP48-215ENST00000534705 SCN3AQ9NY46 2000 aa2.77□□□□□ -1.97
USP48-215ENST00000534705 TRAV18A0A075B6X5 111 aa2.77□□□□□ -1.97
USP48-215ENST00000534705 IGHV3-20A0A0C4DH32 117 aa2.77□□□□□ -1.97
USP48-215ENST00000534705 TSPAN11A1L157 253 aa2.77□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms