RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 CRMP1Q14194 572 aa17.1■□□□□ 0.33
CPSF1-209ENST00000532725 GINS1Q14691 196 aa17.1■□□□□ 0.33
CPSF1-209ENST00000532725 CCDC92Q53HC0 331 aaPredicted RBP17.1■□□□□ 0.33
CPSF1-209ENST00000532725 HIST2H3PS2Q5TEC6 136 aa17.1■□□□□ 0.33
CPSF1-209ENST00000532725 SLC27A4Q6P1M0 643 aa17.1■□□□□ 0.33
CPSF1-209ENST00000532725 HIST2H3AQ71DI3 136 aa17.1■□□□□ 0.33
CPSF1-209ENST00000532725 HIPK1Q86Z02 1210 aa17.1■□□□□ 0.33
CPSF1-209ENST00000532725 MRPL24Q96A35 216 aaKnown RBP17.1■□□□□ 0.33
CPSF1-209ENST00000532725 CMC2Q9NRP2 79 aa17.1■□□□□ 0.33
CPSF1-209ENST00000532725 ASH2LQ9UBL3 628 aa17.1■□□□□ 0.33
CPSF1-209ENST00000532725 TEP1Q99973 2627 aaKnown RBP17.1■□□□□ 0.33
CPSF1-209ENST00000532725 ZNF469Q96JG9 3925 aaPredicted RBP17.09■□□□□ 0.33
CPSF1-209ENST00000532725 C5orf49A4QMS7 147 aa17.09■□□□□ 0.33
CPSF1-209ENST00000532725 SGCEO43556 437 aa17.09■□□□□ 0.33
CPSF1-209ENST00000532725 FAM157BP0CG42 384 aa17.09■□□□□ 0.33
CPSF1-209ENST00000532725 CCNOP22674 350 aa17.09■□□□□ 0.33
CPSF1-209ENST00000532725 PYCR1P32322 319 aa17.09■□□□□ 0.33
CPSF1-209ENST00000532725 WNT5AP41221 380 aa17.09■□□□□ 0.33
CPSF1-209ENST00000532725 EVX1P49640 407 aa17.09■□□□□ 0.33
CPSF1-209ENST00000532725 SLC25A1P53007 311 aa17.09■□□□□ 0.33
CPSF1-209ENST00000532725 RPS23P62266 143 aaKnown RBP17.09■□□□□ 0.33
CPSF1-209ENST00000532725 RAB35Q15286 201 aa17.09■□□□□ 0.33
CPSF1-209ENST00000532725 VASH1Q7L8A9 365 aaPredicted RBP17.09■□□□□ 0.33
CPSF1-209ENST00000532725 OR2T4Q8NH00 348 aa17.09■□□□□ 0.33
CPSF1-209ENST00000532725 PYDC1Q8WXC3 89 aa17.09■□□□□ 0.33
CPSF1-209ENST00000532725 DNAJC9Q8WXX5 260 aa17.09■□□□□ 0.33
CPSF1-209ENST00000532725 PTP4A1Q93096 173 aa17.09■□□□□ 0.33
CPSF1-209ENST00000532725 CENPNQ96H22 339 aaPredicted RBP17.09■□□□□ 0.33
CPSF1-209ENST00000532725 MRPL37Q9BZE1 423 aaKnown RBP17.09■□□□□ 0.33
CPSF1-209ENST00000532725 BCL2L14Q9BZR8 327 aa17.09■□□□□ 0.33
CPSF1-209ENST00000532725 MRPL22Q9NWU5 206 aaKnown RBP17.09■□□□□ 0.33
CPSF1-209ENST00000532725 LHFPL6Q9Y693 200 aa17.09■□□□□ 0.33
CPSF1-209ENST00000532725 MED13LQ71F56 2210 aa17.09■□□□□ 0.33
CPSF1-209ENST00000532725 H3BNX3 289 aa17.08■□□□□ 0.32
CPSF1-209ENST00000532725 RER1O15258 196 aa17.08■□□□□ 0.32
CPSF1-209ENST00000532725 SYNGR3O43761 229 aa17.08■□□□□ 0.32
CPSF1-209ENST00000532725 IFNGP01579 166 aa17.08■□□□□ 0.32
CPSF1-209ENST00000532725 GGT2P36268 569 aa17.08■□□□□ 0.32
CPSF1-209ENST00000532725 SNRPD2P62316 118 aaKnown RBP17.08■□□□□ 0.32
CPSF1-209ENST00000532725 ZSCAN2Q7Z7L9 614 aaPredicted RBP17.08■□□□□ 0.32
CPSF1-209ENST00000532725 LRP11Q86VZ4 500 aa17.08■□□□□ 0.32
CPSF1-209ENST00000532725 ZDHHC13Q8IUH4 622 aa17.08■□□□□ 0.32
CPSF1-209ENST00000532725 PARP8Q8N3A8 854 aa17.08■□□□□ 0.32
CPSF1-209ENST00000532725 SVOPLQ8N434 492 aa17.08■□□□□ 0.32
CPSF1-209ENST00000532725 GJC3Q8NFK1 279 aa17.08■□□□□ 0.32
CPSF1-209ENST00000532725 OR9Q1Q8NGQ5 310 aa17.08■□□□□ 0.32
CPSF1-209ENST00000532725 SEMA6AQ9H2E6 1030 aa17.08■□□□□ 0.32
CPSF1-209ENST00000532725 PAPOLBQ9NRJ5 636 aaKnown RBP17.08■□□□□ 0.32
CPSF1-209ENST00000532725 FLNAP21333 2647 aaKnown RBP17.08■□□□□ 0.32
CPSF1-209ENST00000532725 OR6C6A6NF89 314 aa17.07■□□□□ 0.32
CPSF1-209ENST00000532725 RIIAD1A6NNX1 92 aa17.07■□□□□ 0.32
CPSF1-209ENST00000532725 ICMTO60725 284 aa17.07■□□□□ 0.32
CPSF1-209ENST00000532725 HMGN1P05114 100 aa17.07■□□□□ 0.32
CPSF1-209ENST00000532725 CD99P14209 185 aa17.07■□□□□ 0.32
CPSF1-209ENST00000532725 CRISP1P54107 249 aa17.07■□□□□ 0.32
CPSF1-209ENST00000532725 ERVS71-1P61550 626 aa17.07■□□□□ 0.32
CPSF1-209ENST00000532725 CORO6Q6QEF8 472 aa17.07■□□□□ 0.32
CPSF1-209ENST00000532725 DNM1P46Q6ZS02 220 aa17.07■□□□□ 0.32
CPSF1-209ENST00000532725 ZNF101Q8IZC7 436 aa17.07■□□□□ 0.32
CPSF1-209ENST00000532725 PROKR2Q8NFJ6 384 aa17.07■□□□□ 0.32
CPSF1-209ENST00000532725 OR51L1Q8NGJ5 315 aa17.07■□□□□ 0.32
CPSF1-209ENST00000532725 Q96MF0 132 aa17.07■□□□□ 0.32
CPSF1-209ENST00000532725 GABARAPL1Q9H0R8 117 aa17.07■□□□□ 0.32
CPSF1-209ENST00000532725 OR51B6Q9H340 312 aa17.07■□□□□ 0.32
CPSF1-209ENST00000532725 BARX1Q9HBU1 254 aaPredicted RBP17.07■□□□□ 0.32
CPSF1-209ENST00000532725 DLL4Q9NR61 685 aa17.07■□□□□ 0.32
CPSF1-209ENST00000532725 PLEK2Q9NYT0 353 aa17.07■□□□□ 0.32
CPSF1-209ENST00000532725 EIF3KQ9UBQ5 218 aaKnown RBP17.07■□□□□ 0.32
CPSF1-209ENST00000532725 CYB5R1Q9UHQ9 305 aa17.07■□□□□ 0.32
CPSF1-209ENST00000532725 FBXO9Q9UK97 447 aaPredicted RBP17.07■□□□□ 0.32
CPSF1-209ENST00000532725 NDRG4Q9ULP0 352 aaKnown RBP17.07■□□□□ 0.32
CPSF1-209ENST00000532725 FZR1Q9UM11 496 aa17.07■□□□□ 0.32
CPSF1-209ENST00000532725 DOK2O60496 412 aa17.06■□□□□ 0.32
CPSF1-209ENST00000532725 F12P00748 615 aaPredicted RBP17.06■□□□□ 0.32
CPSF1-209ENST00000532725 NGFP01138 241 aa17.06■□□□□ 0.32
CPSF1-209ENST00000532725 HLA-DQA2P01906 255 aa17.06■□□□□ 0.32
CPSF1-209ENST00000532725 GYPBP06028 91 aa17.06■□□□□ 0.32
CPSF1-209ENST00000532725 LCKP06239 509 aa17.06■□□□□ 0.32
CPSF1-209ENST00000532725 CLUP10909 449 aa17.06■□□□□ 0.32
CPSF1-209ENST00000532725 ZNF250P15622 560 aa17.06■□□□□ 0.32
CPSF1-209ENST00000532725 ZNF23P17027 643 aa17.06■□□□□ 0.32
CPSF1-209ENST00000532725 ZNF3P17036 446 aa17.06■□□□□ 0.32
CPSF1-209ENST00000532725 SPI1P17947 270 aa17.06■□□□□ 0.32
CPSF1-209ENST00000532725 PPOXP50336 477 aa17.06■□□□□ 0.32
CPSF1-209ENST00000532725 TMEM236Q5W0B7 351 aa17.06■□□□□ 0.32
CPSF1-209ENST00000532725 KDM4DQ6B0I6 523 aa17.06■□□□□ 0.32
CPSF1-209ENST00000532725 RGS7BPQ6MZT1 257 aaPredicted RBP17.06■□□□□ 0.32
CPSF1-209ENST00000532725 SLC18B1Q6NT16 456 aa17.06■□□□□ 0.32
CPSF1-209ENST00000532725 OR10H5Q8NGA6 315 aa17.06■□□□□ 0.32
CPSF1-209ENST00000532725 OR1F12Q8NHA8 337 aa17.06■□□□□ 0.32
CPSF1-209ENST00000532725 C4orf45Q96LM5 186 aa17.06■□□□□ 0.32
CPSF1-209ENST00000532725 HCAR1Q9BXC0 346 aa17.06■□□□□ 0.32
CPSF1-209ENST00000532725 SLC25A19Q9HC21 320 aa17.06■□□□□ 0.32
CPSF1-209ENST00000532725 KIF17Q9P2E2 1029 aa17.06■□□□□ 0.32
CPSF1-209ENST00000532725 TVP23AA6NH52 213 aa17.05■□□□□ 0.32
CPSF1-209ENST00000532725 SURF4O15260 269 aa17.05■□□□□ 0.32
CPSF1-209ENST00000532725 MITFO75030 526 aaPredicted RBP17.05■□□□□ 0.32
CPSF1-209ENST00000532725 HTR5AP47898 357 aa17.05■□□□□ 0.32
CPSF1-209ENST00000532725 EFNA4P52798 201 aa17.05■□□□□ 0.32
CPSF1-209ENST00000532725 ESRRGP62508 458 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms