RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 HCCSP53701 268 aa13.35□□□□□ -0.27
LSM1-203ENST00000520755 LSM6P62312 80 aaKnown RBP13.35□□□□□ -0.27
LSM1-203ENST00000520755 MVKQ03426 396 aa13.35□□□□□ -0.27
LSM1-203ENST00000520755 TEX30Q5JUR7 227 aa13.35□□□□□ -0.27
LSM1-203ENST00000520755 SLC18B1Q6NT16 456 aa13.35□□□□□ -0.27
LSM1-203ENST00000520755 CORO6Q6QEF8 472 aa13.35□□□□□ -0.27
LSM1-203ENST00000520755 SEZ6L2Q6UXD5 910 aa13.35□□□□□ -0.27
LSM1-203ENST00000520755 AHSA2Q719I0 299 aa13.35□□□□□ -0.27
LSM1-203ENST00000520755 SLC16A9Q7RTY1 509 aa13.35□□□□□ -0.27
LSM1-203ENST00000520755 CDC20BQ86Y33 519 aa13.35□□□□□ -0.27
LSM1-203ENST00000520755 SIGLEC11Q96RL6 698 aa13.35□□□□□ -0.27
LSM1-203ENST00000520755 ASH2LQ9UBL3 628 aa13.35□□□□□ -0.27
LSM1-203ENST00000520755 CYB5R1Q9UHQ9 305 aa13.35□□□□□ -0.27
LSM1-203ENST00000520755 MYRFQ9Y2G1 1151 aa13.35□□□□□ -0.27
LSM1-203ENST00000520755 ANKHD1Q8IWZ3 2542 aaKnown RBP13.35□□□□□ -0.27
LSM1-203ENST00000520755 ARPC4-TTLL3A0A0A6YYG9 625 aa13.34□□□□□ -0.27
LSM1-203ENST00000520755 SNTNA6NMZ2 147 aa13.34□□□□□ -0.27
LSM1-203ENST00000520755 A6NNC1 897 aa13.34□□□□□ -0.27
LSM1-203ENST00000520755 ZNF593O00488 134 aaPredicted RBP13.34□□□□□ -0.27
LSM1-203ENST00000520755 FARS2O95363 451 aaKnown RBP13.34□□□□□ -0.27
LSM1-203ENST00000520755 IGHA1P01876 353 aa13.34□□□□□ -0.27
LSM1-203ENST00000520755 HLA-HP01893 362 aa13.34□□□□□ -0.27
LSM1-203ENST00000520755 HTR1AP08908 422 aa13.34□□□□□ -0.27
LSM1-203ENST00000520755 CST2P09228 141 aa13.34□□□□□ -0.27
LSM1-203ENST00000520755 PIPP12273 146 aaPredicted RBP13.34□□□□□ -0.27
LSM1-203ENST00000520755 ZNF83P51522 516 aa13.34□□□□□ -0.27
LSM1-203ENST00000520755 HIST1H3AP68431 136 aa13.34□□□□□ -0.27
LSM1-203ENST00000520755 SLC35A2P78381 396 aa13.34□□□□□ -0.27
LSM1-203ENST00000520755 RAB40BQ12829 278 aa13.34□□□□□ -0.27
LSM1-203ENST00000520755 POU4F2Q12837 409 aa13.34□□□□□ -0.27
LSM1-203ENST00000520755 DAZAP2Q15038 168 aaPredicted RBP13.34□□□□□ -0.27
LSM1-203ENST00000520755 RBM48Q5RL73 367 aaKnown RBP13.34□□□□□ -0.27
LSM1-203ENST00000520755 HIST2H3PS2Q5TEC6 136 aa13.34□□□□□ -0.27
LSM1-203ENST00000520755 CFAP77Q6ZQR2 320 aa13.34□□□□□ -0.27
LSM1-203ENST00000520755 HIST2H3AQ71DI3 136 aa13.34□□□□□ -0.27
LSM1-203ENST00000520755 SSX6Q7RTT6 188 aa13.34□□□□□ -0.27
LSM1-203ENST00000520755 DPY19L4Q7Z388 723 aa13.34□□□□□ -0.27
LSM1-203ENST00000520755 SLC35F2Q8IXU6 374 aa13.34□□□□□ -0.27
LSM1-203ENST00000520755 ZNF295-AS1Q8N0V1 137 aa13.34□□□□□ -0.27
LSM1-203ENST00000520755 OR10H5Q8NGA6 315 aa13.34□□□□□ -0.27
LSM1-203ENST00000520755 OR10S1Q8NGN2 331 aa13.34□□□□□ -0.27
LSM1-203ENST00000520755 ST7LQ8TDW4 575 aa13.34□□□□□ -0.27
LSM1-203ENST00000520755 PIK3IP1Q96FE7 263 aa13.34□□□□□ -0.27
LSM1-203ENST00000520755 MAP6Q96JE9 813 aa13.34□□□□□ -0.27
LSM1-203ENST00000520755 ZNF649Q9BS31 505 aa13.34□□□□□ -0.27
LSM1-203ENST00000520755 TTTY10Q9BZA0 68 aa13.34□□□□□ -0.27
LSM1-203ENST00000520755 FGF20Q9NP95 211 aaPredicted RBP13.34□□□□□ -0.27
LSM1-203ENST00000520755 NGBQ9NPG2 151 aa13.34□□□□□ -0.27
LSM1-203ENST00000520755 OBP2BQ9NPH6 170 aa13.34□□□□□ -0.27
LSM1-203ENST00000520755 PNRC2Q9NPJ4 139 aaKnown RBP13.34□□□□□ -0.27
LSM1-203ENST00000520755 B3GNT2Q9NY97 397 aa13.34□□□□□ -0.27
LSM1-203ENST00000520755 CNOT2Q9NZN8 540 aaKnown RBP13.34□□□□□ -0.27
LSM1-203ENST00000520755 CRYBG3Q68DQ2 2970 aa13.34□□□□□ -0.27
LSM1-203ENST00000520755 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.33□□□□□ -0.28
LSM1-203ENST00000520755 M0R1B8 84 aa13.33□□□□□ -0.28
LSM1-203ENST00000520755 SIAH2O43255 324 aa13.33□□□□□ -0.28
LSM1-203ENST00000520755 CD79AP11912 226 aa13.33□□□□□ -0.28
LSM1-203ENST00000520755 HOXB1P14653 301 aaPredicted RBP13.33□□□□□ -0.28
LSM1-203ENST00000520755 ZNF823P16415 610 aa13.33□□□□□ -0.28
LSM1-203ENST00000520755 ZNF32P17041 273 aa13.33□□□□□ -0.28
LSM1-203ENST00000520755 GUCA1AP43080 201 aaPredicted RBP13.33□□□□□ -0.28
LSM1-203ENST00000520755 ZNF85Q03923 595 aa13.33□□□□□ -0.28
LSM1-203ENST00000520755 TLE4Q04727 773 aa13.33□□□□□ -0.28
LSM1-203ENST00000520755 PIGFQ07326 219 aa13.33□□□□□ -0.28
LSM1-203ENST00000520755 AQP6Q13520 282 aa13.33□□□□□ -0.28
LSM1-203ENST00000520755 SSX8Q7RTT4 187 aa13.33□□□□□ -0.28
LSM1-203ENST00000520755 SLC16A14Q7RTX9 510 aa13.33□□□□□ -0.28
LSM1-203ENST00000520755 OTOSQ8NHW6 89 aa13.33□□□□□ -0.28
LSM1-203ENST00000520755 NANOS1Q8WY41 292 aaKnown RBP13.33□□□□□ -0.28
LSM1-203ENST00000520755 PLPPR2Q96GM1 343 aa13.33□□□□□ -0.28
LSM1-203ENST00000520755 ZNF75AQ96N20 296 aa13.33□□□□□ -0.28
LSM1-203ENST00000520755 TBX5Q99593 518 aa13.33□□□□□ -0.28
LSM1-203ENST00000520755 YIPF3Q9GZM5 350 aa13.33□□□□□ -0.28
LSM1-203ENST00000520755 DUSP21Q9H596 190 aa13.33□□□□□ -0.28
LSM1-203ENST00000520755 NPAP1Q9NZP6 1156 aa13.33□□□□□ -0.28
LSM1-203ENST00000520755 GDF2Q9UK05 429 aaPredicted RBP13.33□□□□□ -0.28
LSM1-203ENST00000520755 POLR1DQ9Y2S0 133 aa13.33□□□□□ -0.28
LSM1-203ENST00000520755 EFCAB10A6NFE3 127 aa13.32□□□□□ -0.28
LSM1-203ENST00000520755 TRIM64A6NGJ6 449 aa13.32□□□□□ -0.28
LSM1-203ENST00000520755 C12orf71A8MTZ7 269 aa13.32□□□□□ -0.28
LSM1-203ENST00000520755 DEFB108AA8MXU0 73 aa13.32□□□□□ -0.28
LSM1-203ENST00000520755 RER1O15258 196 aa13.32□□□□□ -0.28
LSM1-203ENST00000520755 ALOX5APP20292 161 aa13.32□□□□□ -0.28
LSM1-203ENST00000520755 CSNK2BP67870 215 aa13.32□□□□□ -0.28
LSM1-203ENST00000520755 ST3GAL4Q11206 333 aa13.32□□□□□ -0.28
LSM1-203ENST00000520755 DOC2BQ14184 412 aa13.32□□□□□ -0.28
LSM1-203ENST00000520755 CCDC92Q53HC0 331 aaPredicted RBP13.32□□□□□ -0.28
LSM1-203ENST00000520755 BEX5Q5H9J7 111 aa13.32□□□□□ -0.28
LSM1-203ENST00000520755 DCXRQ7Z4W1 244 aa13.32□□□□□ -0.28
LSM1-203ENST00000520755 MDP1Q86V88 176 aa13.32□□□□□ -0.28
LSM1-203ENST00000520755 MYPOPQ86VE0 399 aaPredicted RBP13.32□□□□□ -0.28
LSM1-203ENST00000520755 CCDC36Q8IYA8 594 aa13.32□□□□□ -0.28
LSM1-203ENST00000520755 ZNF540Q8NDQ6 660 aa13.32□□□□□ -0.28
LSM1-203ENST00000520755 OR10H4Q8NGA5 316 aa13.32□□□□□ -0.28
LSM1-203ENST00000520755 ABHD6Q9BV23 337 aa13.32□□□□□ -0.28
LSM1-203ENST00000520755 JAM3Q9BX67 310 aa13.32□□□□□ -0.28
LSM1-203ENST00000520755 WNT5BQ9H1J7 359 aa13.32□□□□□ -0.28
LSM1-203ENST00000520755 DIMT1Q9UNQ2 313 aaKnown RBP13.32□□□□□ -0.28
LSM1-203ENST00000520755 HECTD1Q9ULT8 2610 aa13.32□□□□□ -0.28
LSM1-203ENST00000520755 RTTNQ86VV8 2226 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms