RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 ATXN7L1Q9ULK2 861 aaPredicted RBP8.32□□□□□ -1.08
LIMCH1-215ENST00000512632 LRP12Q9Y561 859 aa8.32□□□□□ -1.08
LIMCH1-215ENST00000512632 MED12Q93074 2177 aa8.32□□□□□ -1.08
LIMCH1-215ENST00000512632 BGLAPP02818 100 aa8.32□□□□□ -1.08
LIMCH1-215ENST00000512632 IGHV4-34P06331 123 aa8.32□□□□□ -1.08
LIMCH1-215ENST00000512632 RPA2P15927 270 aa8.32□□□□□ -1.08
LIMCH1-215ENST00000512632 VAMP1P23763 118 aa8.32□□□□□ -1.08
LIMCH1-215ENST00000512632 EIF1AXP47813 144 aaKnown RBP8.32□□□□□ -1.08
LIMCH1-215ENST00000512632 KCTD18Q6PI47 426 aaPredicted RBP8.32□□□□□ -1.08
LIMCH1-215ENST00000512632 KCTD9Q7L273 389 aa8.32□□□□□ -1.08
LIMCH1-215ENST00000512632 GPR119Q8TDV5 335 aa8.32□□□□□ -1.08
LIMCH1-215ENST00000512632 AIFM2Q9BRQ8 373 aa8.32□□□□□ -1.08
LIMCH1-215ENST00000512632 ADAM19Q9H013 955 aa8.32□□□□□ -1.08
LIMCH1-215ENST00000512632 DZANK1Q9NVP4 752 aa8.32□□□□□ -1.08
LIMCH1-215ENST00000512632 HRH3Q9Y5N1 445 aa8.32□□□□□ -1.08
LIMCH1-215ENST00000512632 PCNX3Q9H6A9 2034 aa8.32□□□□□ -1.08
LIMCH1-215ENST00000512632 IGHV5-51A0A0C4DH38 117 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 SPTY2D1-AS1A0A0U1RR47 76 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 FAM74A7A6NL05 159 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 IL12BP29460 328 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 CAPZA1P52907 286 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 RPL27P61353 136 aaKnown RBP8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 PMPCAQ10713 525 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 FAM74A3Q4VXF1 159 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 FAM166AQ6J272 317 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 MAMDC2Q7Z304 686 aaPredicted RBP8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 OR13C8Q8NGS7 320 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 ZBTB8AQ96BR9 441 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 ARPC5LQ9BPX5 153 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 H3BUI4 141 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 AQP8O94778 261 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 RORAP35398 523 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 FMODQ06828 376 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 MPPED2Q15777 294 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 SMAD2Q15796 467 aaKnown RBP8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 TMEM185AQ8NFB2 350 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 OR13C3Q8NGS6 347 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 PPP1R1CQ8WVI7 109 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 VRK1Q99986 396 aaPredicted RBP8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 FBRSQ9HAH7 460 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 PRMT8Q9NR22 394 aaPredicted RBP8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 TRAV36DV7A0A075B6V5 113 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 LOC101059948A0A1B0GTJ6 334 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 EEF1E1-BLOC1S5C9J1V9 151 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 PRAMEF26H0Y7S4 382 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 GP1BBP13224 206 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 IL11P20809 199 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 ATP1B3P54709 279 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 SCAND1P57086 179 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 SERTAD2Q14140 314 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 HLA-DQA1Q5Y7H0 255 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 C16orf47Q6ZP98 133 aaPredicted RBP8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 OR4D6Q8NGJ1 314 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 NUDCD2Q8WVJ2 157 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 ZNF587Q96SQ5 575 aaPredicted RBP8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 SLC25A21Q9BQT8 299 aaPredicted RBP8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 NUDT9Q9BW91 350 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 KLK13Q9UKR3 277 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 TMED7Q9Y3B3 224 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 HS3ST3A1Q9Y663 406 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 LAMA1P25391 3075 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 KANTRA0A1W2PQU2 76 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 TMEM150CB9EJG8 249 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 P2RY10O00398 339 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 PHYHO14832 338 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 DCNP07585 359 aaKnown RBP8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 MGMTP16455 207 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 EN2P19622 333 aaPredicted RBP8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 GNALP38405 381 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 VWA2Q5GFL6 755 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 UNQ6126/PRO20091Q6UXV3 157 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 ZNF584Q8IVC4 421 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 TMEM229BQ8NBD8 167 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 LRRC46Q96FV0 321 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 CCNL2Q96S94 520 aaPredicted RBP8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 CST11Q9H112 138 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 ALX4Q9H161 411 aaPredicted RBP8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 IFT46Q9NQC8 304 aa8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 SPTBN5Q9NRC6 3674 aaKnown RBP8.31□□□□□ -1.08
LIMCH1-215ENST00000512632 SNAPC5O75971 98 aa8.3□□□□□ -1.08
LIMCH1-215ENST00000512632 ZNF735P0CB33 412 aa8.3□□□□□ -1.08
LIMCH1-215ENST00000512632 RNASE10Q5GAN6 216 aaKnown RBP8.3□□□□□ -1.08
LIMCH1-215ENST00000512632 SHISA6Q6ZSJ9 500 aa8.3□□□□□ -1.08
LIMCH1-215ENST00000512632 TCTN2Q96GX1 697 aa8.3□□□□□ -1.08
LIMCH1-215ENST00000512632 LAT2Q9GZY6 243 aa8.3□□□□□ -1.08
LIMCH1-215ENST00000512632 HHLA2Q9UM44 414 aa8.3□□□□□ -1.08
LIMCH1-215ENST00000512632 PLCL2Q9UPR0 1127 aa8.3□□□□□ -1.08
LIMCH1-215ENST00000512632 TMED7-TICAM2A0A0A6YYA0 188 aa8.3□□□□□ -1.08
LIMCH1-215ENST00000512632 IGLV1-36A0A0B4J1U3 117 aa8.3□□□□□ -1.08
LIMCH1-215ENST00000512632 C13orf42A0A1B0GVH6 325 aa8.3□□□□□ -1.08
LIMCH1-215ENST00000512632 LOC107986453A0A1B0GWG9 222 aa8.3□□□□□ -1.08
LIMCH1-215ENST00000512632 F5H0A9 414 aaPredicted RBP8.3□□□□□ -1.08
LIMCH1-215ENST00000512632 TPPPO94811 219 aa8.3□□□□□ -1.08
LIMCH1-215ENST00000512632 TEX30Q5JUR7 227 aa8.3□□□□□ -1.08
LIMCH1-215ENST00000512632 RTN4RL2Q86UN3 420 aa8.3□□□□□ -1.08
LIMCH1-215ENST00000512632 BPIFCQ8NFQ6 507 aa8.3□□□□□ -1.08
LIMCH1-215ENST00000512632 WNT2BQ93097 391 aa8.3□□□□□ -1.08
LIMCH1-215ENST00000512632 C8orf44Q96CB5 159 aa8.3□□□□□ -1.08
LIMCH1-215ENST00000512632 SLC46A1Q96NT5 459 aa8.3□□□□□ -1.08
LIMCH1-215ENST00000512632 NPAS1Q99742 590 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms