RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 LRP12Q9Y561 859 aa9.58□□□□□ -0.88
USP4-214ENST00000491791 NUBP2Q9Y5Y2 271 aa9.58□□□□□ -0.88
USP4-214ENST00000491791 NSG1A0A0A6YYJ2 146 aa9.57□□□□□ -0.88
USP4-214ENST00000491791 A0A1B0GTH9 108 aa9.57□□□□□ -0.88
USP4-214ENST00000491791 INMT-MINDY4F8WBC2 141 aa9.57□□□□□ -0.88
USP4-214ENST00000491791 SLC17A2O00624 439 aa9.57□□□□□ -0.88
USP4-214ENST00000491791 CDK2AP1O14519 115 aa9.57□□□□□ -0.88
USP4-214ENST00000491791 XRCC3O43542 346 aa9.57□□□□□ -0.88
USP4-214ENST00000491791 ZIC3O60481 467 aa9.57□□□□□ -0.88
USP4-214ENST00000491791 EIF1BO60739 113 aaKnown RBP9.57□□□□□ -0.88
USP4-214ENST00000491791 GPANK1O95872 356 aa9.57□□□□□ -0.88
USP4-214ENST00000491791 IGHG1P01857 330 aa9.57□□□□□ -0.88
USP4-214ENST00000491791 SPARCP09486 303 aa9.57□□□□□ -0.88
USP4-214ENST00000491791 LIFP15018 202 aa9.57□□□□□ -0.88
USP4-214ENST00000491791 CTSSP25774 331 aa9.57□□□□□ -0.88
USP4-214ENST00000491791 LAP3P28838 519 aa9.57□□□□□ -0.88
USP4-214ENST00000491791 PTH2RP49190 550 aa9.57□□□□□ -0.88
USP4-214ENST00000491791 SSR4P51571 173 aa9.57□□□□□ -0.88
USP4-214ENST00000491791 AGFG1P52594 562 aaKnown RBP9.57□□□□□ -0.88
USP4-214ENST00000491791 SUCLG1P53597 346 aaKnown RBP9.57□□□□□ -0.88
USP4-214ENST00000491791 RAB25P57735 213 aa9.57□□□□□ -0.88
USP4-214ENST00000491791 MELKQ14680 651 aa9.57□□□□□ -0.88
USP4-214ENST00000491791 SSPNQ14714 243 aa9.57□□□□□ -0.88
USP4-214ENST00000491791 TATDN3Q17R31 274 aa9.57□□□□□ -0.88
USP4-214ENST00000491791 ELFN2Q5R3F8 820 aa9.57□□□□□ -0.88
USP4-214ENST00000491791 ATAD3CQ5T2N8 411 aa9.57□□□□□ -0.88
USP4-214ENST00000491791 FOXL2NBQ6ZUU3 175 aa9.57□□□□□ -0.88
USP4-214ENST00000491791 LINGO2Q7L985 606 aa9.57□□□□□ -0.88
USP4-214ENST00000491791 PPP1R32Q7Z5V6 425 aa9.57□□□□□ -0.88
USP4-214ENST00000491791 TMPRSS12Q86WS5 348 aa9.57□□□□□ -0.88
USP4-214ENST00000491791 ASB5Q8WWX0 329 aa9.57□□□□□ -0.88
USP4-214ENST00000491791 PTX4Q96A99 478 aa9.57□□□□□ -0.88
USP4-214ENST00000491791 C5orf34Q96MH7 638 aa9.57□□□□□ -0.88
USP4-214ENST00000491791 TAAR9Q96RI9 348 aa9.57□□□□□ -0.88
USP4-214ENST00000491791 UTP23Q9BRU9 249 aaKnown RBP9.57□□□□□ -0.88
USP4-214ENST00000491791 STRADBQ9C0K7 418 aa9.57□□□□□ -0.88
USP4-214ENST00000491791 OR2B2Q9GZK3 357 aa9.57□□□□□ -0.88
USP4-214ENST00000491791 DPAGT1Q9H3H5 408 aa9.57□□□□□ -0.88
USP4-214ENST00000491791 NLKQ9UBE8 527 aa9.57□□□□□ -0.88
USP4-214ENST00000491791 PADI1Q9ULC6 663 aa9.57□□□□□ -0.88
USP4-214ENST00000491791 HHLA2Q9UM44 414 aa9.57□□□□□ -0.88
USP4-214ENST00000491791 KNTC1P50748 2209 aa9.56□□□□□ -0.88
USP4-214ENST00000491791 GCN1Q92616 2671 aaKnown RBP9.56□□□□□ -0.88
USP4-214ENST00000491791 TRAV8-7A0A075B6U6 113 aa9.56□□□□□ -0.88
USP4-214ENST00000491791 A0A087WV48 116 aa9.56□□□□□ -0.88
USP4-214ENST00000491791 A0A0A6YYH2 397 aa9.56□□□□□ -0.88
USP4-214ENST00000491791 LINC00854A0A1B0GVQ3 168 aa9.56□□□□□ -0.88
USP4-214ENST00000491791 A6NJ64 397 aa9.56□□□□□ -0.88
USP4-214ENST00000491791 RGS13O14921 159 aa9.56□□□□□ -0.88
USP4-214ENST00000491791 GLSO94925 669 aaPredicted RBP9.56□□□□□ -0.88
USP4-214ENST00000491791 HPP00738 406 aa9.56□□□□□ -0.88
USP4-214ENST00000491791 CD2P06729 351 aa9.56□□□□□ -0.88
USP4-214ENST00000491791 UBCP0CG48 685 aaKnown RBP9.56□□□□□ -0.88
USP4-214ENST00000491791 BIDP55957 195 aa9.56□□□□□ -0.88
USP4-214ENST00000491791 AP3S2P59780 193 aa9.56□□□□□ -0.88
USP4-214ENST00000491791 DGCR2P98153 550 aa9.56□□□□□ -0.88
USP4-214ENST00000491791 SSBP1Q04837 148 aaKnown RBP9.56□□□□□ -0.88
USP4-214ENST00000491791 EIF3IQ13347 325 aaKnown RBP9.56□□□□□ -0.88
USP4-214ENST00000491791 TBRG1Q3YBR2 411 aa9.56□□□□□ -0.88
USP4-214ENST00000491791 C1orf100Q5SVJ3 147 aa9.56□□□□□ -0.88
USP4-214ENST00000491791 C10orf128Q5T292 105 aa9.56□□□□□ -0.88
USP4-214ENST00000491791 HES5Q5TA89 166 aa9.56□□□□□ -0.88
USP4-214ENST00000491791 RSBN1Q5VWQ0 802 aaPredicted RBP9.56□□□□□ -0.88
USP4-214ENST00000491791 OLFML2AQ68BL7 652 aa9.56□□□□□ -0.88
USP4-214ENST00000491791 TMEM225Q6GV28 225 aa9.56□□□□□ -0.88
USP4-214ENST00000491791 ASPHD2Q6ICH7 369 aa9.56□□□□□ -0.88
USP4-214ENST00000491791 ANKRD16Q6P6B7 361 aa9.56□□□□□ -0.88
USP4-214ENST00000491791 C6orf15Q6UXA7 325 aaPredicted RBP9.56□□□□□ -0.88
USP4-214ENST00000491791 LRRC69Q6ZNQ3 347 aa9.56□□□□□ -0.88
USP4-214ENST00000491791 BTN2A1Q7KYR7 527 aa9.56□□□□□ -0.88
USP4-214ENST00000491791 FCRLAQ7L513 359 aa9.56□□□□□ -0.88
USP4-214ENST00000491791 ZNF227Q86WZ6 799 aa9.56□□□□□ -0.88
USP4-214ENST00000491791 WDFY1Q8IWB7 410 aa9.56□□□□□ -0.88
USP4-214ENST00000491791 CDH26Q8IXH8 852 aa9.56□□□□□ -0.88
USP4-214ENST00000491791 KDM8Q8N371 416 aa9.56□□□□□ -0.88
USP4-214ENST00000491791 TOMM5Q8N4H5 51 aa9.56□□□□□ -0.88
USP4-214ENST00000491791 ZNF433Q8N7K0 673 aaPredicted RBP9.56□□□□□ -0.88
USP4-214ENST00000491791 NOXO1Q8NFA2 376 aa9.56□□□□□ -0.88
USP4-214ENST00000491791 OR10AC1Q8NH08 325 aa9.56□□□□□ -0.88
USP4-214ENST00000491791 PMEPA1Q969W9 287 aa9.56□□□□□ -0.88
USP4-214ENST00000491791 SLC25A28Q96A46 364 aa9.56□□□□□ -0.88
USP4-214ENST00000491791 INTS12Q96CB8 462 aaKnown RBP9.56□□□□□ -0.88
USP4-214ENST00000491791 SCMH1Q96GD3 660 aa9.56□□□□□ -0.88
USP4-214ENST00000491791 ZNF486Q96H40 463 aaPredicted RBP9.56□□□□□ -0.88
USP4-214ENST00000491791 RNF170Q96K19 258 aa9.56□□□□□ -0.88
USP4-214ENST00000491791 FAM210AQ96ND0 272 aa9.56□□□□□ -0.88
USP4-214ENST00000491791 SLC25A18Q9H1K4 315 aa9.56□□□□□ -0.88
USP4-214ENST00000491791 MOB1AQ9H8S9 216 aa9.56□□□□□ -0.88
USP4-214ENST00000491791 NEK6Q9HC98 313 aa9.56□□□□□ -0.88
USP4-214ENST00000491791 ING1Q9UK53 422 aaPredicted RBP9.56□□□□□ -0.88
USP4-214ENST00000491791 OR52A1Q9UKL2 312 aa9.56□□□□□ -0.88
USP4-214ENST00000491791 FBXL3Q9UKT7 428 aa9.56□□□□□ -0.88
USP4-214ENST00000491791 TCFL5Q9UL49 500 aa9.56□□□□□ -0.88
USP4-214ENST00000491791 PCDHGA1Q9Y5H4 931 aa9.56□□□□□ -0.88
USP4-214ENST00000491791 N6AMT1Q9Y5N5 214 aa9.56□□□□□ -0.88
USP4-214ENST00000491791 ALG5Q9Y673 324 aa9.56□□□□□ -0.88
USP4-214ENST00000491791 CELSR3Q9NYQ7 3312 aa9.56□□□□□ -0.88
USP4-214ENST00000491791 LOC400499M0QZD8 3231 aa9.56□□□□□ -0.88
USP4-214ENST00000491791 PTPRBP23467 1997 aa9.55□□□□□ -0.88
USP4-214ENST00000491791 IGKV1D-43A0A0B4J1Z2 117 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms