RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 MDP1Q86V88 176 aa8.98□□□□□ -0.97
SKA1-204ENST00000488454 C8orf59Q8N0T1 100 aaPredicted RBP8.98□□□□□ -0.97
SKA1-204ENST00000488454 FAM169BQ8N8A8 192 aa8.98□□□□□ -0.97
SKA1-204ENST00000488454 BBS1Q8NFJ9 593 aa8.98□□□□□ -0.97
SKA1-204ENST00000488454 GJC3Q8NFK1 279 aa8.98□□□□□ -0.97
SKA1-204ENST00000488454 SLC26A10Q8NG04 563 aa8.98□□□□□ -0.97
SKA1-204ENST00000488454 RHOXF1Q8NHV9 184 aa8.98□□□□□ -0.97
SKA1-204ENST00000488454 ZNRF4Q8WWF5 429 aa8.98□□□□□ -0.97
SKA1-204ENST00000488454 TFAP2CQ92754 450 aa8.98□□□□□ -0.97
SKA1-204ENST00000488454 ZMYND19Q96E35 227 aaPredicted RBP8.98□□□□□ -0.97
SKA1-204ENST00000488454 INTS14Q96SY0 518 aa8.98□□□□□ -0.97
SKA1-204ENST00000488454 KCNS3Q9BQ31 491 aa8.98□□□□□ -0.97
SKA1-204ENST00000488454 HCAR1Q9BXC0 346 aa8.98□□□□□ -0.97
SKA1-204ENST00000488454 ESRP2Q9H6T0 727 aaKnown RBP8.98□□□□□ -0.97
SKA1-204ENST00000488454 WARS2Q9UGM6 360 aaKnown RBP8.98□□□□□ -0.97
SKA1-204ENST00000488454 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP8.98□□□□□ -0.97
SKA1-204ENST00000488454 HSPE1-MOB4S4R3N1 261 aa8.98□□□□□ -0.97
SKA1-204ENST00000488454 ENTPD6O75354 484 aa8.97□□□□□ -0.97
SKA1-204ENST00000488454 CLIC3O95833 236 aa8.97□□□□□ -0.97
SKA1-204ENST00000488454 SCG5P05408 212 aa8.97□□□□□ -0.97
SKA1-204ENST00000488454 SPARCP09486 303 aa8.97□□□□□ -0.97
SKA1-204ENST00000488454 GAAP10253 952 aa8.97□□□□□ -0.97
SKA1-204ENST00000488454 ZNF32P17041 273 aa8.97□□□□□ -0.97
SKA1-204ENST00000488454 CRYGSP22914 178 aa8.97□□□□□ -0.97
SKA1-204ENST00000488454 HTR1FP30939 366 aa8.97□□□□□ -0.97
SKA1-204ENST00000488454 ENTPD1P49961 510 aa8.97□□□□□ -0.97
SKA1-204ENST00000488454 NR1H2P55055 460 aa8.97□□□□□ -0.97
SKA1-204ENST00000488454 DBPQ10586 325 aaPredicted RBP8.97□□□□□ -0.97
SKA1-204ENST00000488454 ENDOGQ14249 297 aaKnown RBP8.97□□□□□ -0.97
SKA1-204ENST00000488454 MEP1BQ16820 701 aa8.97□□□□□ -0.97
SKA1-204ENST00000488454 BEX5Q5H9J7 111 aa8.97□□□□□ -0.97
SKA1-204ENST00000488454 C22orf34Q6ZV56 151 aa8.97□□□□□ -0.97
SKA1-204ENST00000488454 SHFQ7M4L6 423 aa8.97□□□□□ -0.97
SKA1-204ENST00000488454 BCDIN3DQ7Z5W3 292 aaKnown RBP8.97□□□□□ -0.97
SKA1-204ENST00000488454 ERI1Q8IV48 349 aaKnown RBP8.97□□□□□ -0.97
SKA1-204ENST00000488454 ENTHD1Q8IYW4 607 aa8.97□□□□□ -0.97
SKA1-204ENST00000488454 IL17RDQ8NFM7 739 aa8.97□□□□□ -0.97
SKA1-204ENST00000488454 FBXO17Q96EF6 278 aa8.97□□□□□ -0.97
SKA1-204ENST00000488454 ZNF582Q96NG8 517 aaPredicted RBP8.97□□□□□ -0.97
SKA1-204ENST00000488454 C1orf198Q9H425 327 aa8.97□□□□□ -0.97
SKA1-204ENST00000488454 Q9H521 79 aa8.97□□□□□ -0.97
SKA1-204ENST00000488454 B3GNT2Q9NY97 397 aa8.97□□□□□ -0.97
SKA1-204ENST00000488454 DNAJC27Q9NZQ0 273 aa8.97□□□□□ -0.97
SKA1-204ENST00000488454 ASH2LQ9UBL3 628 aa8.97□□□□□ -0.97
SKA1-204ENST00000488454 FREM1Q5H8C1 2179 aa8.97□□□□□ -0.97
SKA1-204ENST00000488454 SGCEO43556 437 aa8.96□□□□□ -0.98
SKA1-204ENST00000488454 RGS9O75916 674 aaPredicted RBP8.96□□□□□ -0.98
SKA1-204ENST00000488454 SERPINA5P05154 406 aa8.96□□□□□ -0.98
SKA1-204ENST00000488454 MMP7P09237 267 aaPredicted RBP8.96□□□□□ -0.98
SKA1-204ENST00000488454 SLC2A5P22732 501 aa8.96□□□□□ -0.98
SKA1-204ENST00000488454 PTAFRP25105 342 aa8.96□□□□□ -0.98
SKA1-204ENST00000488454 APLNRP35414 380 aa8.96□□□□□ -0.98
SKA1-204ENST00000488454 IDH3GP51553 393 aaPredicted RBP8.96□□□□□ -0.98
SKA1-204ENST00000488454 PSG4Q00888 419 aa8.96□□□□□ -0.98
SKA1-204ENST00000488454 RAB39AQ14964 217 aa8.96□□□□□ -0.98
SKA1-204ENST00000488454 DAZAP2Q15038 168 aaPredicted RBP8.96□□□□□ -0.98
SKA1-204ENST00000488454 C3orf36Q3SXR2 165 aa8.96□□□□□ -0.98
SKA1-204ENST00000488454 PABPC1L2AQ5JQF8 200 aa8.96□□□□□ -0.98
SKA1-204ENST00000488454 TEX30Q5JUR7 227 aa8.96□□□□□ -0.98
SKA1-204ENST00000488454 LINC01590Q5TEZ4 76 aa8.96□□□□□ -0.98
SKA1-204ENST00000488454 OTPQ5XKR4 325 aa8.96□□□□□ -0.98
SKA1-204ENST00000488454 TMEM154Q6P9G4 183 aa8.96□□□□□ -0.98
SKA1-204ENST00000488454 CORO6Q6QEF8 472 aa8.96□□□□□ -0.98
SKA1-204ENST00000488454 B3GLCTQ6Y288 498 aa8.96□□□□□ -0.98
SKA1-204ENST00000488454 SLC16A9Q7RTY1 509 aa8.96□□□□□ -0.98
SKA1-204ENST00000488454 LINC00346Q8IVM7 164 aa8.96□□□□□ -0.98
SKA1-204ENST00000488454 ACBD4Q8NC06 268 aa8.96□□□□□ -0.98
SKA1-204ENST00000488454 OR1J2Q8NGS2 313 aa8.96□□□□□ -0.98
SKA1-204ENST00000488454 OR6N2Q8NGY6 317 aa8.96□□□□□ -0.98
SKA1-204ENST00000488454 FGFBP3Q8TAT2 258 aa8.96□□□□□ -0.98
SKA1-204ENST00000488454 PIK3IP1Q96FE7 263 aa8.96□□□□□ -0.98
SKA1-204ENST00000488454 PLPPR2Q96GM1 343 aa8.96□□□□□ -0.98
SKA1-204ENST00000488454 OR2H1Q9GZK4 316 aa8.96□□□□□ -0.98
SKA1-204ENST00000488454 WDR76Q9H967 626 aa8.96□□□□□ -0.98
SKA1-204ENST00000488454 MRPL22Q9NWU5 206 aaKnown RBP8.96□□□□□ -0.98
SKA1-204ENST00000488454 HAO2Q9NYQ3 351 aa8.96□□□□□ -0.98
SKA1-204ENST00000488454 PLEK2Q9NYT0 353 aa8.96□□□□□ -0.98
SKA1-204ENST00000488454 ZNF224Q9NZL3 707 aa8.96□□□□□ -0.98
SKA1-204ENST00000488454 FRRS1LQ9P0K9 344 aa8.96□□□□□ -0.98
SKA1-204ENST00000488454 CRNNQ9UBG3 495 aaPredicted RBP8.96□□□□□ -0.98
SKA1-204ENST00000488454 CYB5R1Q9UHQ9 305 aa8.96□□□□□ -0.98
SKA1-204ENST00000488454 RPL36Q9Y3U8 105 aaKnown RBP8.96□□□□□ -0.98
SKA1-204ENST00000488454 TMEM14AQ9Y6G1 99 aa8.96□□□□□ -0.98
SKA1-204ENST00000488454 COMMD3-BMI1R4GMX3 469 aa8.96□□□□□ -0.98
SKA1-204ENST00000488454 SPTBN1Q01082 2364 aaKnown RBP8.96□□□□□ -0.98
SKA1-204ENST00000488454 DOPEY1Q5JWR5 2465 aa8.96□□□□□ -0.98
SKA1-204ENST00000488454 FLNCQ14315 2725 aa8.96□□□□□ -0.98
SKA1-204ENST00000488454 HELZ2Q9BYK8 2649 aaKnown RBP8.95□□□□□ -0.98
SKA1-204ENST00000488454 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.95□□□□□ -0.98
SKA1-204ENST00000488454 ZNF503-AS2A6NEH8 195 aa8.95□□□□□ -0.98
SKA1-204ENST00000488454 CCDC182A6NF36 153 aa8.95□□□□□ -0.98
SKA1-204ENST00000488454 RER1O15258 196 aa8.95□□□□□ -0.98
SKA1-204ENST00000488454 DOK2O60496 412 aa8.95□□□□□ -0.98
SKA1-204ENST00000488454 GOSR1O95249 250 aa8.95□□□□□ -0.98
SKA1-204ENST00000488454 IGKV3-15P01624 115 aa8.95□□□□□ -0.98
SKA1-204ENST00000488454 CRYAAP02489 173 aa8.95□□□□□ -0.98
SKA1-204ENST00000488454 CD3EP07766 207 aa8.95□□□□□ -0.98
SKA1-204ENST00000488454 MRPL3P09001 348 aaKnown RBP8.95□□□□□ -0.98
SKA1-204ENST00000488454 CCNOP22674 350 aa8.95□□□□□ -0.98
SKA1-204ENST00000488454 CD40P25942 277 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms