RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 SPEF1Q9Y4P9 236 aa16.08■□□□□ 0.17
VIM-206ENST00000487938 R4GMQ9 66 aa16.08■□□□□ 0.17
VIM-206ENST00000487938 ZNF354AO60765 605 aaPredicted RBP16.08■□□□□ 0.16
VIM-206ENST00000487938 RAB3DO95716 219 aa16.08■□□□□ 0.16
VIM-206ENST00000487938 IGFBP4P22692 258 aa16.08■□□□□ 0.16
VIM-206ENST00000487938 FBXW4P57775 412 aa16.08■□□□□ 0.16
VIM-206ENST00000487938 TMED4Q7Z7H5 227 aa16.08■□□□□ 0.16
VIM-206ENST00000487938 GALNT16Q8N428 558 aa16.08■□□□□ 0.16
VIM-206ENST00000487938 NKD1Q969G9 470 aa16.08■□□□□ 0.16
VIM-206ENST00000487938 CXorf58Q96LI9 332 aa16.08■□□□□ 0.16
VIM-206ENST00000487938 CENPMQ9NSP4 180 aa16.08■□□□□ 0.16
VIM-206ENST00000487938 MED29Q9NX70 200 aa16.08■□□□□ 0.16
VIM-206ENST00000487938 OR52A1Q9UKL2 312 aa16.08■□□□□ 0.16
VIM-206ENST00000487938 CPAMD8Q8IZJ3 1885 aa16.07■□□□□ 0.16
VIM-206ENST00000487938 SPAG17Q6Q759 2223 aa16.07■□□□□ 0.16
VIM-206ENST00000487938 FTCDNL1E5RQL4 147 aa16.07■□□□□ 0.16
VIM-206ENST00000487938 ADAM10O14672 748 aa16.07■□□□□ 0.16
VIM-206ENST00000487938 SMAD9O15198 467 aaKnown RBP16.07■□□□□ 0.16
VIM-206ENST00000487938 ALOX12BO75342 701 aa16.07■□□□□ 0.16
VIM-206ENST00000487938 SRSF10O75494 262 aaKnown RBP16.07■□□□□ 0.16
VIM-206ENST00000487938 IGHMP01871 453 aa16.07■□□□□ 0.16
VIM-206ENST00000487938 ACSM4P0C7M7 580 aa16.07■□□□□ 0.16
VIM-206ENST00000487938 TSSK4Q6SA08 328 aa16.07■□□□□ 0.16
VIM-206ENST00000487938 D2HGDHQ8N465 521 aa16.07■□□□□ 0.16
VIM-206ENST00000487938 STK35Q8TDR2 534 aa16.07■□□□□ 0.16
VIM-206ENST00000487938 G6PC2Q9NQR9 355 aa16.07■□□□□ 0.16
VIM-206ENST00000487938 KIF25Q9UIL4 384 aa16.07■□□□□ 0.16
VIM-206ENST00000487938 HHLA2Q9UM44 414 aa16.07■□□□□ 0.16
VIM-206ENST00000487938 VDAC3Q9Y277 283 aa16.07■□□□□ 0.16
VIM-206ENST00000487938 FARSAQ9Y285 508 aaKnown RBP16.07■□□□□ 0.16
VIM-206ENST00000487938 TMEM269A0A1B0GVZ9 245 aa16.07■□□□□ 0.16
VIM-206ENST00000487938 LOC107986453A0A1B0GWG9 222 aa16.07■□□□□ 0.16
VIM-206ENST00000487938 SHISA8B8ZZ34 492 aa16.07■□□□□ 0.16
VIM-206ENST00000487938 P2RY10O00398 339 aa16.07■□□□□ 0.16
VIM-206ENST00000487938 OR2T1O43869 369 aa16.07■□□□□ 0.16
VIM-206ENST00000487938 CSN2P05814 226 aa16.07■□□□□ 0.16
VIM-206ENST00000487938 M6PRP20645 277 aa16.07■□□□□ 0.16
VIM-206ENST00000487938 HOXD11P31277 338 aaPredicted RBP16.07■□□□□ 0.16
VIM-206ENST00000487938 TAS2R19P59542 299 aa16.07■□□□□ 0.16
VIM-206ENST00000487938 RNF4P78317 190 aa16.07■□□□□ 0.16
VIM-206ENST00000487938 MFSD13AQ14CX5 517 aa16.07■□□□□ 0.16
VIM-206ENST00000487938 SMUG1Q53HV7 270 aa16.07■□□□□ 0.16
VIM-206ENST00000487938 WDR45BQ5MNZ6 344 aa16.07■□□□□ 0.16
VIM-206ENST00000487938 B3GNTL1Q67FW5 361 aaPredicted RBP16.07■□□□□ 0.16
VIM-206ENST00000487938 PLXDC1Q8IUK5 500 aa16.07■□□□□ 0.16
VIM-206ENST00000487938 SLC26A10Q8NG04 563 aa16.07■□□□□ 0.16
VIM-206ENST00000487938 B3GNT4Q9C0J1 378 aa16.07■□□□□ 0.16
VIM-206ENST00000487938 MED11Q9P086 117 aa16.07■□□□□ 0.16
VIM-206ENST00000487938 SUSD2Q9UGT4 822 aa16.07■□□□□ 0.16
VIM-206ENST00000487938 NUP50Q9UKX7 468 aa16.07■□□□□ 0.16
VIM-206ENST00000487938 FER1L5A0AVI2 2057 aa16.06■□□□□ 0.16
VIM-206ENST00000487938 A0A1B0GX78 115 aa16.06■□□□□ 0.16
VIM-206ENST00000487938 OR6C65A6NJZ3 312 aa16.06■□□□□ 0.16
VIM-206ENST00000487938 HMSDA8MTL9 139 aa16.06■□□□□ 0.16
VIM-206ENST00000487938 NPIPA5E9PKD4 350 aa16.06■□□□□ 0.16
VIM-206ENST00000487938 TEX46H3BTG2 121 aa16.06■□□□□ 0.16
VIM-206ENST00000487938 AMY2AP04746 511 aa16.06■□□□□ 0.16
VIM-206ENST00000487938 ITGB2P05107 769 aa16.06■□□□□ 0.16
VIM-206ENST00000487938 LPLP06858 475 aa16.06■□□□□ 0.16
VIM-206ENST00000487938 ARRB1P49407 418 aaPredicted RBP16.06■□□□□ 0.16
VIM-206ENST00000487938 NXPH1P58417 271 aa16.06■□□□□ 0.16
VIM-206ENST00000487938 ACTBP60709 375 aa16.06■□□□□ 0.16
VIM-206ENST00000487938 ACTG1P63261 375 aa16.06■□□□□ 0.16
VIM-206ENST00000487938 SORDQ00796 357 aa16.06■□□□□ 0.16
VIM-206ENST00000487938 ZNF454Q8N9F8 522 aa16.06■□□□□ 0.16
VIM-206ENST00000487938 WBP1Q96G27 269 aa16.06■□□□□ 0.16
VIM-206ENST00000487938 NPIPA1Q9UND3 350 aa16.06■□□□□ 0.16
VIM-206ENST00000487938 LOC105371267A0A1B0GV96 52 aa16.06■□□□□ 0.16
VIM-206ENST00000487938 hCG_1807616A0A1W2PRN6 198 aa16.06■□□□□ 0.16
VIM-206ENST00000487938 TTLL8A6PVC2 850 aa16.06■□□□□ 0.16
VIM-206ENST00000487938 B8ZZF3 427 aa16.06■□□□□ 0.16
VIM-206ENST00000487938 RP2O75695 350 aa16.06■□□□□ 0.16
VIM-206ENST00000487938 PIAS2O75928 621 aa16.06■□□□□ 0.16
VIM-206ENST00000487938 OR4E1P0C645 316 aa16.06■□□□□ 0.16
VIM-206ENST00000487938 SRFP11831 508 aa16.06■□□□□ 0.16
VIM-206ENST00000487938 ZNF28P17035 718 aa16.06■□□□□ 0.16
VIM-206ENST00000487938 EIF1AXP47813 144 aaKnown RBP16.06■□□□□ 0.16
VIM-206ENST00000487938 PMPCAQ10713 525 aa16.06■□□□□ 0.16
VIM-206ENST00000487938 ARSKQ6UWY0 536 aa16.06■□□□□ 0.16
VIM-206ENST00000487938 GLRX5Q86SX6 157 aa16.06■□□□□ 0.16
VIM-206ENST00000487938 ACBD4Q8NC06 268 aa16.06■□□□□ 0.16
VIM-206ENST00000487938 OR4D6Q8NGJ1 314 aa16.06■□□□□ 0.16
VIM-206ENST00000487938 OR6M1Q8NGM8 313 aa16.06■□□□□ 0.16
VIM-206ENST00000487938 ASB10Q8WXI3 467 aa16.06■□□□□ 0.16
VIM-206ENST00000487938 EMC6Q9BV81 110 aa16.06■□□□□ 0.16
VIM-206ENST00000487938 REG4Q9BYZ8 158 aa16.06■□□□□ 0.16
VIM-206ENST00000487938 FGF21Q9NSA1 209 aa16.06■□□□□ 0.16
VIM-206ENST00000487938 TMEM82A0PJX8 343 aa16.05■□□□□ 0.16
VIM-206ENST00000487938 OR6C76A6NM76 312 aa16.05■□□□□ 0.16
VIM-206ENST00000487938 POU3F1Q03052 451 aaPredicted RBP16.05■□□□□ 0.16
VIM-206ENST00000487938 SCGB2B2Q4G0G5 96 aa16.05■□□□□ 0.16
VIM-206ENST00000487938 HIST2H2ABQ8IUE6 130 aaPredicted RBP16.05■□□□□ 0.16
VIM-206ENST00000487938 TMEM229BQ8NBD8 167 aa16.05■□□□□ 0.16
VIM-206ENST00000487938 OR4S1Q8NGB4 309 aa16.05■□□□□ 0.16
VIM-206ENST00000487938 ST7LQ8TDW4 575 aa16.05■□□□□ 0.16
VIM-206ENST00000487938 SDHAF2Q9NX18 166 aa16.05■□□□□ 0.16
VIM-206ENST00000487938 ZNF230Q9UIE0 474 aaPredicted RBP16.05■□□□□ 0.16
VIM-206ENST00000487938 FBXO4Q9UKT5 387 aa16.05■□□□□ 0.16
VIM-206ENST00000487938 TMEM235A6NFC5 223 aa16.05■□□□□ 0.16
VIM-206ENST00000487938 DUX1O43812 170 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms