RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 SKA2Q8WVK7 121 aaPredicted RBP3.23□□□□□ -1.89
PTCD3-216ENST00000487043 C10orf82Q8WW14 230 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 EMG1Q92979 244 aaKnown RBP3.23□□□□□ -1.89
PTCD3-216ENST00000487043 SH3YL1Q96HL8 342 aaPredicted RBP3.23□□□□□ -1.89
PTCD3-216ENST00000487043 LINC00479Q96M42 142 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 OR2M4Q96R27 311 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 NPAS2Q99743 824 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 SLC30A2Q9BRI3 323 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 MCRIP2Q9BUT9 160 aaKnown RBP3.23□□□□□ -1.89
PTCD3-216ENST00000487043 LRRC61Q9BV99 259 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 TUBB1Q9H4B7 451 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 APMAPQ9HDC9 416 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 MEPEQ9NQ76 525 aaPredicted RBP3.23□□□□□ -1.89
PTCD3-216ENST00000487043 TXLNGQ9NUQ3 528 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 STOX2Q9P2F5 926 aaPredicted RBP3.23□□□□□ -1.89
PTCD3-216ENST00000487043 OPTCQ9UBM4 332 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 CTSZQ9UBR2 303 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 ZNF225Q9UK10 706 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 PCTPQ9UKL6 214 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 PSMD13Q9UNM6 376 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 ASF1AQ9Y294 204 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 STK38LQ9Y2H1 464 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 ARL2BPQ9Y2Y0 163 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 NAALAD2Q9Y3Q0 740 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 GMPPBQ9Y5P6 360 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 USH1CQ9Y6N9 552 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 CEP192Q8TEP8 1941 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 PLXND1Q9Y4D7 1925 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 TECTAO75443 2155 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 EML5Q05BV3 1969 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 TRPC5OSA6NMA1 111 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 OR5K4A6NMS3 321 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 FOXI3A8MTJ6 420 aaPredicted RBP3.22□□□□□ -1.89
PTCD3-216ENST00000487043 PDZK1P1A8MUH7 402 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 OR7A17O14581 309 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 AZIN1O14977 448 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 LRRTM2O43300 516 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 TPST2O60704 377 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 CCDC22O60826 627 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 DCTN3O75935 186 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 CLDN9O95484 217 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 OTCP00480 354 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 IGHV3-9P01782 118 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 ERGP11308 486 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 CTSEP14091 401 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 PVRP15151 417 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 PCMT1P22061 227 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 AK4P27144 223 aaPredicted RBP3.22□□□□□ -1.89
PTCD3-216ENST00000487043 IMPA1P29218 277 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 PRDX3P30048 256 aaKnown RBP3.22□□□□□ -1.89
PTCD3-216ENST00000487043 HPCAL1P37235 193 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 ETV5P41161 510 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 ACTR1BP42025 376 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 CSNK1EP49674 416 aaKnown RBP3.22□□□□□ -1.89
PTCD3-216ENST00000487043 MNAT1P51948 309 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 FOXA1P55317 472 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 ERVPABLB-1P60509 514 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 BDH1Q02338 343 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 DDX39BQ13838 428 aaKnown RBP3.22□□□□□ -1.89
PTCD3-216ENST00000487043 CRMP1Q14194 572 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 ARHGAP19Q14CB8 494 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 ABRAXAS2Q15018 415 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 ELOCQ15369 112 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 EXOC3L2Q2M3D2 409 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 KCTD21Q4G0X4 260 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 FBXO48Q5FWF7 155 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 C9orf66Q5T8R8 295 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 MBOAT1Q6ZNC8 495 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 RPS27LQ71UM5 84 aaKnown RBP3.22□□□□□ -1.89
PTCD3-216ENST00000487043 EFL1Q7Z2Z2 1120 aaKnown RBP3.22□□□□□ -1.89
PTCD3-216ENST00000487043 THOC6Q86W42 341 aaKnown RBP3.22□□□□□ -1.89
PTCD3-216ENST00000487043 BPIFB2Q8N4F0 458 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 TMEM105Q8N8V8 129 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 SYT14Q8NB59 555 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 BHLHE23Q8NDY6 225 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 OR4F6Q8NGB9 312 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 OR5AR1Q8NGP9 310 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 CCL4L1Q8NHW4 92 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 FNDC8Q8TC99 324 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 AGAP11Q8TF27 550 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 WDR34Q96EX3 536 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 WBP1Q96G27 269 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 PDXPQ96GD0 296 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 C12orf66Q96MD2 445 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 RILPQ96NA2 401 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 AMDHD1Q96NU7 426 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 ZNF382Q96SR6 550 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 EBF4Q9BQW3 602 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 SHCBP1LQ9BZQ2 653 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 MAGT1Q9H0U3 335 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 TCEAL2Q9H3H9 227 aaPredicted RBP3.22□□□□□ -1.89
PTCD3-216ENST00000487043 TM9SF3Q9HD45 589 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 SLC40A1Q9NP59 571 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 IMP3Q9NV31 184 aaKnown RBP3.22□□□□□ -1.89
PTCD3-216ENST00000487043 SPATA7Q9P0W8 599 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 MARCOQ9UEW3 520 aaPredicted RBP3.22□□□□□ -1.89
PTCD3-216ENST00000487043 RPH3ALQ9UNE2 315 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 RNF24Q9Y225 148 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 SLC22A14Q9Y267 594 aa3.22□□□□□ -1.89
PTCD3-216ENST00000487043 DNAJC15Q9Y5T4 150 aa3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms