RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 MED18Q9BUE0 208 aa10.68□□□□□ -0.7
SDC1-206ENST00000482879 C1QTNF6Q9BXI9 259 aa10.68□□□□□ -0.7
SDC1-206ENST00000482879 OR2H1Q9GZK4 316 aa10.68□□□□□ -0.7
SDC1-206ENST00000482879 MRPS18AQ9NVS2 196 aaKnown RBP10.68□□□□□ -0.7
SDC1-206ENST00000482879 B3GNT2Q9NY97 397 aa10.68□□□□□ -0.7
SDC1-206ENST00000482879 PSORS1C1Q9UIG5 152 aa10.68□□□□□ -0.7
SDC1-206ENST00000482879 GDF2Q9UK05 429 aaPredicted RBP10.68□□□□□ -0.7
SDC1-206ENST00000482879 EXOGQ9Y2C4 368 aaKnown RBP10.68□□□□□ -0.7
SDC1-206ENST00000482879 TPRKBQ9Y3C4 175 aa10.68□□□□□ -0.7
SDC1-206ENST00000482879 PCDHGB1Q9Y5G3 927 aa10.68□□□□□ -0.7
SDC1-206ENST00000482879 SLC25A15Q9Y619 301 aa10.68□□□□□ -0.7
SDC1-206ENST00000482879 ANKHD1Q8IWZ3 2542 aaKnown RBP10.68□□□□□ -0.7
SDC1-206ENST00000482879 PKDREJQ9NTG1 2253 aa10.68□□□□□ -0.7
SDC1-206ENST00000482879 DOPEY2Q9Y3R5 2298 aa10.68□□□□□ -0.7
SDC1-206ENST00000482879 IRGMA1A4Y4 181 aa10.67□□□□□ -0.7
SDC1-206ENST00000482879 EFCAB10A6NFE3 127 aa10.67□□□□□ -0.7
SDC1-206ENST00000482879 TUBAL3A6NHL2 446 aa10.67□□□□□ -0.7
SDC1-206ENST00000482879 PTGES3LE9PB15 166 aa10.67□□□□□ -0.7
SDC1-206ENST00000482879 ZNF670-ZNF695F2Z2N8 137 aa10.67□□□□□ -0.7
SDC1-206ENST00000482879 C19orf84I3L1E1 186 aa10.67□□□□□ -0.7
SDC1-206ENST00000482879 RER1O15258 196 aa10.67□□□□□ -0.7
SDC1-206ENST00000482879 RAB36O95755 333 aa10.67□□□□□ -0.7
SDC1-206ENST00000482879 FADS2O95864 444 aaKnown RBP10.67□□□□□ -0.7
SDC1-206ENST00000482879 CCDC159P0C7I6 412 aa10.67□□□□□ -0.7
SDC1-206ENST00000482879 OR2T7P0C7T2 308 aa10.67□□□□□ -0.7
SDC1-206ENST00000482879 CBR1P16152 277 aa10.67□□□□□ -0.7
SDC1-206ENST00000482879 PSG4Q00888 419 aa10.67□□□□□ -0.7
SDC1-206ENST00000482879 SCRN3Q0VDG4 424 aa10.67□□□□□ -0.7
SDC1-206ENST00000482879 PABPC1L2AQ5JQF8 200 aa10.67□□□□□ -0.7
SDC1-206ENST00000482879 RBM48Q5RL73 367 aaKnown RBP10.67□□□□□ -0.7
SDC1-206ENST00000482879 C1QTNF12Q5T7M4 302 aa10.67□□□□□ -0.7
SDC1-206ENST00000482879 C22orf34Q6ZV56 151 aa10.67□□□□□ -0.7
SDC1-206ENST00000482879 SSX8Q7RTT4 187 aa10.67□□□□□ -0.7
SDC1-206ENST00000482879 DCXRQ7Z4W1 244 aa10.67□□□□□ -0.7
SDC1-206ENST00000482879 WFDC8Q8IUA0 241 aa10.67□□□□□ -0.7
SDC1-206ENST00000482879 ALDH16A1Q8IZ83 802 aa10.67□□□□□ -0.7
SDC1-206ENST00000482879 ZNF454Q8N9F8 522 aa10.67□□□□□ -0.7
SDC1-206ENST00000482879 ZNF540Q8NDQ6 660 aa10.67□□□□□ -0.7
SDC1-206ENST00000482879 OR52I1Q8NGK6 324 aa10.67□□□□□ -0.7
SDC1-206ENST00000482879 OR2T27Q8NH04 317 aa10.67□□□□□ -0.7
SDC1-206ENST00000482879 AKR7LQ8NHP1 331 aa10.67□□□□□ -0.7
SDC1-206ENST00000482879 OTOSQ8NHW6 89 aa10.67□□□□□ -0.7
SDC1-206ENST00000482879 MNTQ99583 582 aa10.67□□□□□ -0.7
SDC1-206ENST00000482879 TBX5Q99593 518 aa10.67□□□□□ -0.7
SDC1-206ENST00000482879 RHNO1Q9BSD3 238 aa10.67□□□□□ -0.7
SDC1-206ENST00000482879 WNT5BQ9H1J7 359 aa10.67□□□□□ -0.7
SDC1-206ENST00000482879 C1orf198Q9H425 327 aa10.67□□□□□ -0.7
SDC1-206ENST00000482879 NOX3Q9HBY0 568 aa10.67□□□□□ -0.7
SDC1-206ENST00000482879 FGF20Q9NP95 211 aaPredicted RBP10.67□□□□□ -0.7
SDC1-206ENST00000482879 LAMP5Q9UJQ1 280 aa10.67□□□□□ -0.7
SDC1-206ENST00000482879 COPS3Q9UNS2 423 aa10.67□□□□□ -0.7
SDC1-206ENST00000482879 LRCH1Q9Y2L9 728 aa10.67□□□□□ -0.7
SDC1-206ENST00000482879 KLF2Q9Y5W3 355 aaPredicted RBP10.67□□□□□ -0.7
SDC1-206ENST00000482879 TMEM14AQ9Y6G1 99 aa10.67□□□□□ -0.7
SDC1-206ENST00000482879 FASNP49327 2511 aaKnown RBP10.67□□□□□ -0.7
SDC1-206ENST00000482879 PRSS44E7EML9 344 aa10.66□□□□□ -0.7
SDC1-206ENST00000482879 J3QRE1 110 aa10.66□□□□□ -0.7
SDC1-206ENST00000482879 SGCEO43556 437 aa10.66□□□□□ -0.7
SDC1-206ENST00000482879 THBDP07204 575 aa10.66□□□□□ -0.7
SDC1-206ENST00000482879 LYNP07948 512 aa10.66□□□□□ -0.7
SDC1-206ENST00000482879 ALOX5APP20292 161 aa10.66□□□□□ -0.7
SDC1-206ENST00000482879 PAX7P23759 505 aa10.66□□□□□ -0.7
SDC1-206ENST00000482879 PEX19P40855 299 aa10.66□□□□□ -0.7
SDC1-206ENST00000482879 ZNF83P51522 516 aa10.66□□□□□ -0.7
SDC1-206ENST00000482879 HIST1H3AP68431 136 aa10.66□□□□□ -0.7
SDC1-206ENST00000482879 PLP2Q04941 152 aa10.66□□□□□ -0.7
SDC1-206ENST00000482879 ST3GAL4Q11206 333 aa10.66□□□□□ -0.7
SDC1-206ENST00000482879 RAB39AQ14964 217 aa10.66□□□□□ -0.7
SDC1-206ENST00000482879 CCDC92Q53HC0 331 aaPredicted RBP10.66□□□□□ -0.7
SDC1-206ENST00000482879 HIST2H3PS2Q5TEC6 136 aa10.66□□□□□ -0.7
SDC1-206ENST00000482879 ZNF774Q6NX45 483 aa10.66□□□□□ -0.7
SDC1-206ENST00000482879 CFAP77Q6ZQR2 320 aa10.66□□□□□ -0.7
SDC1-206ENST00000482879 AHSA2Q719I0 299 aa10.66□□□□□ -0.7
SDC1-206ENST00000482879 HIST2H3AQ71DI3 136 aa10.66□□□□□ -0.7
SDC1-206ENST00000482879 STX19Q8N4C7 294 aa10.66□□□□□ -0.7
SDC1-206ENST00000482879 ACBD7Q8N6N7 88 aa10.66□□□□□ -0.7
SDC1-206ENST00000482879 MAP6Q96JE9 813 aa10.66□□□□□ -0.7
SDC1-206ENST00000482879 ABHD6Q9BV23 337 aa10.66□□□□□ -0.7
SDC1-206ENST00000482879 YTHDF1Q9BYJ9 559 aaKnown RBP10.66□□□□□ -0.7
SDC1-206ENST00000482879 CENPMQ9NSP4 180 aa10.66□□□□□ -0.7
SDC1-206ENST00000482879 PLEK2Q9NYT0 353 aa10.66□□□□□ -0.7
SDC1-206ENST00000482879 CNOT2Q9NZN8 540 aaKnown RBP10.66□□□□□ -0.7
SDC1-206ENST00000482879 MYRFQ9Y2G1 1151 aa10.66□□□□□ -0.7
SDC1-206ENST00000482879 KLHDC2Q9Y2U9 406 aa10.66□□□□□ -0.7
SDC1-206ENST00000482879 ABCA4P78363 2273 aa10.65□□□□□ -0.7
SDC1-206ENST00000482879 IQCMA0A1B0GVH7 501 aa10.65□□□□□ -0.7
SDC1-206ENST00000482879 A0A1W2PQL4 384 aaPredicted RBP10.65□□□□□ -0.7
SDC1-206ENST00000482879 DAPL1A0PJW8 107 aa10.65□□□□□ -0.7
SDC1-206ENST00000482879 M0R1B8 84 aa10.65□□□□□ -0.7
SDC1-206ENST00000482879 PHYHO14832 338 aa10.65□□□□□ -0.7
SDC1-206ENST00000482879 DOK2O60496 412 aa10.65□□□□□ -0.7
SDC1-206ENST00000482879 PIPP12273 146 aaPredicted RBP10.65□□□□□ -0.7
SDC1-206ENST00000482879 CRHBPP24387 322 aa10.65□□□□□ -0.7
SDC1-206ENST00000482879 DCKP27707 260 aa10.65□□□□□ -0.7
SDC1-206ENST00000482879 KIR2DL3P43628 341 aa10.65□□□□□ -0.7
SDC1-206ENST00000482879 IDH3GP51553 393 aaPredicted RBP10.65□□□□□ -0.7
SDC1-206ENST00000482879 ACTC1P68032 377 aa10.65□□□□□ -0.7
SDC1-206ENST00000482879 ACTA1P68133 377 aa10.65□□□□□ -0.7
SDC1-206ENST00000482879 RAB35Q15286 201 aa10.65□□□□□ -0.7
SDC1-206ENST00000482879 TAF13Q15543 124 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms