RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 RPL15P61313 204 aaKnown RBP14.34□□□□□ -0.11
VIM-204ENST00000478746 FGF12P61328 243 aa14.34□□□□□ -0.11
VIM-204ENST00000478746 PCBD1P61457 104 aa14.34□□□□□ -0.11
VIM-204ENST00000478746 TTMPQ5BVD1 217 aa14.34□□□□□ -0.11
VIM-204ENST00000478746 LRIF1Q5T3J3 769 aa14.34□□□□□ -0.11
VIM-204ENST00000478746 OR6T1Q8NGN1 323 aa14.34□□□□□ -0.11
VIM-204ENST00000478746 LINC01006Q8NI28 216 aa14.34□□□□□ -0.11
VIM-204ENST00000478746 ADAMTS16Q8TE57 1224 aa14.34□□□□□ -0.11
VIM-204ENST00000478746 CMBLQ96DG6 245 aa14.34□□□□□ -0.11
VIM-204ENST00000478746 NEIL1Q96FI4 390 aaPredicted RBP14.34□□□□□ -0.11
VIM-204ENST00000478746 MPP4Q96JB8 637 aa14.34□□□□□ -0.11
VIM-204ENST00000478746 MAGEB18Q96M61 343 aa14.34□□□□□ -0.11
VIM-204ENST00000478746 GCM1Q9NP62 436 aa14.34□□□□□ -0.11
VIM-204ENST00000478746 INIPQ9NRY2 104 aa14.34□□□□□ -0.11
VIM-204ENST00000478746 SLAMF8Q9P0V8 285 aa14.34□□□□□ -0.11
VIM-204ENST00000478746 STX18Q9P2W9 335 aaKnown RBP14.34□□□□□ -0.11
VIM-204ENST00000478746 POMT1Q9Y6A1 747 aa14.34□□□□□ -0.11
VIM-204ENST00000478746 IGKV1D-43A0A0B4J1Z2 117 aa14.33□□□□□ -0.12
VIM-204ENST00000478746 TRAPPC13A5PLN9 417 aa14.33□□□□□ -0.12
VIM-204ENST00000478746 ABHD16AO95870 558 aa14.33□□□□□ -0.12
VIM-204ENST00000478746 CST2P09228 141 aa14.33□□□□□ -0.12
VIM-204ENST00000478746 THRBP10828 461 aa14.33□□□□□ -0.12
VIM-204ENST00000478746 KITLGP21583 273 aa14.33□□□□□ -0.12
VIM-204ENST00000478746 TUBG1P23258 451 aa14.33□□□□□ -0.12
VIM-204ENST00000478746 LAP3P28838 519 aa14.33□□□□□ -0.12
VIM-204ENST00000478746 GUCA1AP43080 201 aaPredicted RBP14.33□□□□□ -0.12
VIM-204ENST00000478746 FMODQ06828 376 aa14.33□□□□□ -0.12
VIM-204ENST00000478746 CD47Q08722 323 aa14.33□□□□□ -0.12
VIM-204ENST00000478746 NPTX1Q15818 432 aa14.33□□□□□ -0.12
VIM-204ENST00000478746 DUSP7Q16829 419 aa14.33□□□□□ -0.12
VIM-204ENST00000478746 TNFAIP8L3Q5GJ75 292 aa14.33□□□□□ -0.12
VIM-204ENST00000478746 ARMC4Q5T2S8 1044 aa14.33□□□□□ -0.12
VIM-204ENST00000478746 SLC25A47Q6Q0C1 308 aa14.33□□□□□ -0.12
VIM-204ENST00000478746 TBC1D15Q8TC07 691 aa14.33□□□□□ -0.12
VIM-204ENST00000478746 DYRK2Q92630 601 aa14.33□□□□□ -0.12
VIM-204ENST00000478746 NMD3Q96D46 503 aaKnown RBP14.33□□□□□ -0.12
VIM-204ENST00000478746 OR52B2Q96RD2 323 aa14.33□□□□□ -0.12
VIM-204ENST00000478746 POFUT1Q9H488 388 aa14.33□□□□□ -0.12
VIM-204ENST00000478746 TUBG2Q9NRH3 451 aa14.33□□□□□ -0.12
VIM-204ENST00000478746 TBCCD1Q9NVR7 557 aa14.33□□□□□ -0.12
VIM-204ENST00000478746 FUT1P19526 365 aa14.32□□□□□ -0.12
VIM-204ENST00000478746 AQP2P41181 271 aa14.32□□□□□ -0.12
VIM-204ENST00000478746 MMP16P51512 607 aa14.32□□□□□ -0.12
VIM-204ENST00000478746 WDR4P57081 412 aaKnown RBP14.32□□□□□ -0.12
VIM-204ENST00000478746 PROK1P58294 105 aa14.32□□□□□ -0.12
VIM-204ENST00000478746 RUNDC3AQ59EK9 446 aa14.32□□□□□ -0.12
VIM-204ENST00000478746 RUSC1-AS1Q66K80 236 aa14.32□□□□□ -0.12
VIM-204ENST00000478746 NLRC3Q7RTR2 1065 aa14.32□□□□□ -0.12
VIM-204ENST00000478746 RBM45Q8IUH3 476 aaKnown RBP14.32□□□□□ -0.12
VIM-204ENST00000478746 FITM2Q8N6M3 262 aa14.32□□□□□ -0.12
VIM-204ENST00000478746 ATG16L2Q8NAA4 619 aa14.32□□□□□ -0.12
VIM-204ENST00000478746 NPEPL1Q8NDH3 523 aa14.32□□□□□ -0.12
VIM-204ENST00000478746 OR8B3Q8NGG8 313 aa14.32□□□□□ -0.12
VIM-204ENST00000478746 VANGL1Q8TAA9 524 aaPredicted RBP14.32□□□□□ -0.12
VIM-204ENST00000478746 ZNF420Q8TAQ5 688 aaPredicted RBP14.32□□□□□ -0.12
VIM-204ENST00000478746 SSMEM1Q8WWF3 244 aa14.32□□□□□ -0.12
VIM-204ENST00000478746 HDAC2Q92769 488 aaKnown RBP14.32□□□□□ -0.12
VIM-204ENST00000478746 ZBTB9Q96C00 473 aa14.32□□□□□ -0.12
VIM-204ENST00000478746 HAVCR1Q96D42 359 aa14.32□□□□□ -0.12
VIM-204ENST00000478746 RBP7Q96R05 134 aa14.32□□□□□ -0.12
VIM-204ENST00000478746 OR8B2Q96RD0 313 aa14.32□□□□□ -0.12
VIM-204ENST00000478746 TMEM246Q9BRR3 403 aa14.32□□□□□ -0.12
VIM-204ENST00000478746 ZNF426Q9BUY5 554 aa14.32□□□□□ -0.12
VIM-204ENST00000478746 VIPAS39Q9H9C1 493 aa14.32□□□□□ -0.12
VIM-204ENST00000478746 MEPEQ9NQ76 525 aaPredicted RBP14.32□□□□□ -0.12
VIM-204ENST00000478746 VAPAQ9P0L0 249 aa14.32□□□□□ -0.12
VIM-204ENST00000478746 ANGPT4Q9Y264 503 aa14.32□□□□□ -0.12
VIM-204ENST00000478746 GMNCA6NCL1 334 aa14.31□□□□□ -0.12
VIM-204ENST00000478746 EVPLLA8MZ36 301 aa14.31□□□□□ -0.12
VIM-204ENST00000478746 M0QX08 132 aa14.31□□□□□ -0.12
VIM-204ENST00000478746 CYB5R3P00387 301 aaPredicted RBP14.31□□□□□ -0.12
VIM-204ENST00000478746 VIMP08670 466 aaKnown RBP14.31□□□□□ -0.12
VIM-204ENST00000478746 NR2C1P13056 603 aa14.31□□□□□ -0.12
VIM-204ENST00000478746 GPX2P18283 190 aa14.31□□□□□ -0.12
VIM-204ENST00000478746 PITPNBP48739 271 aa14.31□□□□□ -0.12
VIM-204ENST00000478746 MAVSQ7Z434 540 aa14.31□□□□□ -0.12
VIM-204ENST00000478746 PTOV1Q86YD1 416 aa14.31□□□□□ -0.12
VIM-204ENST00000478746 GPR32P1Q8NGA4 272 aa14.31□□□□□ -0.12
VIM-204ENST00000478746 PCGF1Q9BSM1 259 aa14.31□□□□□ -0.12
VIM-204ENST00000478746 KIF17Q9P2E2 1029 aa14.31□□□□□ -0.12
VIM-204ENST00000478746 CLN8Q9UBY8 286 aa14.31□□□□□ -0.12
VIM-204ENST00000478746 NDRG4Q9ULP0 352 aaKnown RBP14.31□□□□□ -0.12
VIM-204ENST00000478746 CORO2BQ9UQ03 480 aa14.31□□□□□ -0.12
VIM-204ENST00000478746 STARD10Q9Y365 291 aa14.31□□□□□ -0.12
VIM-204ENST00000478746 GMEB1Q9Y692 573 aa14.31□□□□□ -0.12
VIM-204ENST00000478746 TNFRSF13BO14836 293 aaPredicted RBP14.3□□□□□ -0.12
VIM-204ENST00000478746 GPR137BO60478 399 aa14.3□□□□□ -0.12
VIM-204ENST00000478746 OR7A10O76100 309 aa14.3□□□□□ -0.12
VIM-204ENST00000478746 MT-ND1P03886 318 aa14.3□□□□□ -0.12
VIM-204ENST00000478746 OPN1SWP03999 348 aa14.3□□□□□ -0.12
VIM-204ENST00000478746 LAPTM4AQ15012 233 aa14.3□□□□□ -0.12
VIM-204ENST00000478746 PAGE3Q5JUK9 113 aa14.3□□□□□ -0.12
VIM-204ENST00000478746 TSPYL5Q86VY4 417 aaPredicted RBP14.3□□□□□ -0.12
VIM-204ENST00000478746 OR4D11Q8NGI4 311 aa14.3□□□□□ -0.12
VIM-204ENST00000478746 MOSPD2Q8NHP6 518 aa14.3□□□□□ -0.12
VIM-204ENST00000478746 PTP4A1Q93096 173 aa14.3□□□□□ -0.12
VIM-204ENST00000478746 IKZF5Q9H5V7 419 aa14.3□□□□□ -0.12
VIM-204ENST00000478746 TMEM120BA0PK00 339 aa14.29□□□□□ -0.12
VIM-204ENST00000478746 C12orf71A8MTZ7 269 aa14.29□□□□□ -0.12
VIM-204ENST00000478746 C3orf80F5H4A9 247 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms