RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 GPX7Q96SL4 187 aaPredicted RBP15.93■□□□□ 0.14
CCDC88B-206ENST00000473405 MYLK2Q9H1R3 596 aa15.93■□□□□ 0.14
CCDC88B-206ENST00000473405 ELOVL3Q9HB03 270 aa15.93■□□□□ 0.14
CCDC88B-206ENST00000473405 MSL2Q9HCI7 577 aa15.93■□□□□ 0.14
CCDC88B-206ENST00000473405 MED4Q9NPJ6 270 aa15.93■□□□□ 0.14
CCDC88B-206ENST00000473405 CYSLTR2Q9NS75 346 aa15.93■□□□□ 0.14
CCDC88B-206ENST00000473405 NDUFAF4Q9P032 175 aa15.93■□□□□ 0.14
CCDC88B-206ENST00000473405 TMEM5Q9Y2B1 443 aa15.93■□□□□ 0.14
CCDC88B-206ENST00000473405 XKRYO14609 159 aa15.92■□□□□ 0.14
CCDC88B-206ENST00000473405 IMPA2O14732 288 aa15.92■□□□□ 0.14
CCDC88B-206ENST00000473405 PLPP2O43688 288 aa15.92■□□□□ 0.14
CCDC88B-206ENST00000473405 AHCYL1O43865 530 aa15.92■□□□□ 0.14
CCDC88B-206ENST00000473405 DOK2O60496 412 aa15.92■□□□□ 0.14
CCDC88B-206ENST00000473405 PTP4A3O75365 173 aa15.92■□□□□ 0.14
CCDC88B-206ENST00000473405 VENTXO95231 258 aa15.92■□□□□ 0.14
CCDC88B-206ENST00000473405 MPZL1O95297 269 aa15.92■□□□□ 0.14
CCDC88B-206ENST00000473405 ABHD16AO95870 558 aa15.92■□□□□ 0.14
CCDC88B-206ENST00000473405 H1F0P07305 194 aaKnown RBP15.92■□□□□ 0.14
CCDC88B-206ENST00000473405 CD55P08174 381 aa15.92■□□□□ 0.14
CCDC88B-206ENST00000473405 COX5BP10606 129 aa15.92■□□□□ 0.14
CCDC88B-206ENST00000473405 LIPAP38571 399 aa15.92■□□□□ 0.14
CCDC88B-206ENST00000473405 OMPP47874 163 aa15.92■□□□□ 0.14
CCDC88B-206ENST00000473405 PSG7Q13046 419 aa15.92■□□□□ 0.14
CCDC88B-206ENST00000473405 KRR1Q13601 381 aaKnown RBP15.92■□□□□ 0.14
CCDC88B-206ENST00000473405 SEC23BQ15437 767 aa15.92■□□□□ 0.14
CCDC88B-206ENST00000473405 HSP90B2PQ58FF3 399 aa15.92■□□□□ 0.14
CCDC88B-206ENST00000473405 OTPQ5XKR4 325 aa15.92■□□□□ 0.14
CCDC88B-206ENST00000473405 FAHD2BQ6P2I3 314 aaPredicted RBP15.92■□□□□ 0.14
CCDC88B-206ENST00000473405 SHQ1Q6PI26 577 aaKnown RBP15.92■□□□□ 0.14
CCDC88B-206ENST00000473405 THSD4Q6ZMP0 1018 aa15.92■□□□□ 0.14
CCDC88B-206ENST00000473405 VASH1Q7L8A9 365 aaPredicted RBP15.92■□□□□ 0.14
CCDC88B-206ENST00000473405 CCL17Q92583 94 aa15.92■□□□□ 0.14
CCDC88B-206ENST00000473405 FAHD2AQ96GK7 314 aa15.92■□□□□ 0.14
CCDC88B-206ENST00000473405 TIMD4Q96H15 378 aa15.92■□□□□ 0.14
CCDC88B-206ENST00000473405 C7orf34Q96L11 122 aa15.92■□□□□ 0.14
CCDC88B-206ENST00000473405 WACQ9BTA9 647 aa15.92■□□□□ 0.14
CCDC88B-206ENST00000473405 EGLN1Q9GZT9 426 aa15.92■□□□□ 0.14
CCDC88B-206ENST00000473405 SYT4Q9H2B2 425 aa15.92■□□□□ 0.14
CCDC88B-206ENST00000473405 OCEL1Q9H607 264 aa15.92■□□□□ 0.14
CCDC88B-206ENST00000473405 EGFL7Q9UHF1 273 aa15.92■□□□□ 0.14
CCDC88B-206ENST00000473405 ZDHHC8Q9ULC8 765 aa15.92■□□□□ 0.14
CCDC88B-206ENST00000473405 MEGF8Q7Z7M0 2845 aa15.91■□□□□ 0.14
CCDC88B-206ENST00000473405 LOC105371242A0A075B767 164 aa15.91■□□□□ 0.14
CCDC88B-206ENST00000473405 TRBV4-1A0A0J9YWV2 114 aa15.91■□□□□ 0.14
CCDC88B-206ENST00000473405 NDUFAB1O14561 156 aa15.91■□□□□ 0.14
CCDC88B-206ENST00000473405 SGCEO43556 437 aa15.91■□□□□ 0.14
CCDC88B-206ENST00000473405 NDUFB2O95178 105 aa15.91■□□□□ 0.14
CCDC88B-206ENST00000473405 ANPEPP15144 967 aa15.91■□□□□ 0.14
CCDC88B-206ENST00000473405 SDHAP31040 664 aa15.91■□□□□ 0.14
CCDC88B-206ENST00000473405 RBMXP38159 391 aaKnown RBP15.91■□□□□ 0.14
CCDC88B-206ENST00000473405 HTR5AP47898 357 aa15.91■□□□□ 0.14
CCDC88B-206ENST00000473405 ARHGDIAP52565 204 aa15.91■□□□□ 0.14
CCDC88B-206ENST00000473405 PSME3P61289 254 aa15.91■□□□□ 0.14
CCDC88B-206ENST00000473405 SCRN3Q0VDG4 424 aa15.91■□□□□ 0.14
CCDC88B-206ENST00000473405 ZMAT1Q5H9K5 638 aa15.91■□□□□ 0.14
CCDC88B-206ENST00000473405 ARL9Q6T311 187 aa15.91■□□□□ 0.14
CCDC88B-206ENST00000473405 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP15.91■□□□□ 0.14
CCDC88B-206ENST00000473405 NPEPL1Q8NDH3 523 aa15.91■□□□□ 0.14
CCDC88B-206ENST00000473405 RAB1CQ92928 201 aa15.91■□□□□ 0.14
CCDC88B-206ENST00000473405 FUZQ9BT04 418 aa15.91■□□□□ 0.14
CCDC88B-206ENST00000473405 TMPRSS13Q9BYE2 586 aa15.91■□□□□ 0.14
CCDC88B-206ENST00000473405 NRIP3Q9NQ35 241 aa15.91■□□□□ 0.14
CCDC88B-206ENST00000473405 TBCCD1Q9NVR7 557 aa15.91■□□□□ 0.14
CCDC88B-206ENST00000473405 DCAF16Q9NXF7 216 aa15.91■□□□□ 0.14
CCDC88B-206ENST00000473405 VSX1Q9NZR4 365 aaPredicted RBP15.91■□□□□ 0.14
CCDC88B-206ENST00000473405 IL20RAQ9UHF4 553 aa15.91■□□□□ 0.14
CCDC88B-206ENST00000473405 RPS6KA6Q9UK32 745 aa15.91■□□□□ 0.14
CCDC88B-206ENST00000473405 A0A0A6YYJ9 748 aa15.9■□□□□ 0.14
CCDC88B-206ENST00000473405 OR6C6A6NF89 314 aa15.9■□□□□ 0.14
CCDC88B-206ENST00000473405 CDK5R2Q13319 367 aa15.9■□□□□ 0.14
CCDC88B-206ENST00000473405 AQP6Q13520 282 aa15.9■□□□□ 0.14
CCDC88B-206ENST00000473405 MTX3Q5HYI7 312 aa15.9■□□□□ 0.14
CCDC88B-206ENST00000473405 FGD3Q5JSP0 725 aa15.9■□□□□ 0.14
CCDC88B-206ENST00000473405 Q6ZR03 302 aa15.9■□□□□ 0.14
CCDC88B-206ENST00000473405 PTCHD4Q6ZW05 846 aa15.9■□□□□ 0.14
CCDC88B-206ENST00000473405 ZNF771Q7L3S4 317 aaPredicted RBP15.9■□□□□ 0.14
CCDC88B-206ENST00000473405 RRM2BQ7LG56 351 aa15.9■□□□□ 0.14
CCDC88B-206ENST00000473405 SLC7A6Q92536 515 aa15.9■□□□□ 0.14
CCDC88B-206ENST00000473405 RSRC1Q96IZ7 334 aaKnown RBP15.9■□□□□ 0.14
CCDC88B-206ENST00000473405 DHRS1Q96LJ7 313 aa15.9■□□□□ 0.14
CCDC88B-206ENST00000473405 DIRC2Q96SL1 478 aa15.9■□□□□ 0.14
CCDC88B-206ENST00000473405 NDEL1Q9GZM8 345 aa15.9■□□□□ 0.14
CCDC88B-206ENST00000473405 SPAG4Q9NPE6 437 aa15.9■□□□□ 0.14
CCDC88B-206ENST00000473405 DCAF13Q9NV06 445 aaKnown RBP15.9■□□□□ 0.14
CCDC88B-206ENST00000473405 ASH2LQ9UBL3 628 aa15.9■□□□□ 0.14
CCDC88B-206ENST00000473405 A0A0G2JMP0 313 aa15.89■□□□□ 0.13
CCDC88B-206ENST00000473405 A0A0X1KG70 313 aa15.89■□□□□ 0.13
CCDC88B-206ENST00000473405 SOCS2O14508 198 aa15.89■□□□□ 0.13
CCDC88B-206ENST00000473405 TIMM8AO60220 97 aaPredicted RBP15.89■□□□□ 0.13
CCDC88B-206ENST00000473405 SLC16A7O60669 478 aa15.89■□□□□ 0.13
CCDC88B-206ENST00000473405 DIRAS1O95057 198 aa15.89■□□□□ 0.13
CCDC88B-206ENST00000473405 RHCEP18577 417 aa15.89■□□□□ 0.13
CCDC88B-206ENST00000473405 GSTM3P21266 225 aa15.89■□□□□ 0.13
CCDC88B-206ENST00000473405 KITLGP21583 273 aa15.89■□□□□ 0.13
CCDC88B-206ENST00000473405 GPR139Q6DWJ6 353 aa15.89■□□□□ 0.13
CCDC88B-206ENST00000473405 ADCK1Q86TW2 530 aa15.89■□□□□ 0.13
CCDC88B-206ENST00000473405 GLB1L2Q8IW92 636 aa15.89■□□□□ 0.13
CCDC88B-206ENST00000473405 OR4M2Q8NGB6 313 aa15.89■□□□□ 0.13
CCDC88B-206ENST00000473405 CMTM5Q96DZ9 223 aa15.89■□□□□ 0.13
CCDC88B-206ENST00000473405 GPA33Q99795 319 aa15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms