RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 FABP5Q01469 135 aa11.32□□□□□ -0.6
VPS13D-205ENST00000473099 SLC3A1Q07837 685 aa11.32□□□□□ -0.6
VPS13D-205ENST00000473099 SGCAQ16586 387 aa11.32□□□□□ -0.6
VPS13D-205ENST00000473099 EIF2S3LQ2VIR3 472 aaKnown RBP11.32□□□□□ -0.6
VPS13D-205ENST00000473099 ZNF829Q3KNS6 432 aaPredicted RBP11.32□□□□□ -0.6
VPS13D-205ENST00000473099 YIF1BQ5BJH7 314 aa11.32□□□□□ -0.6
VPS13D-205ENST00000473099 PHYHD1Q5SRE7 291 aa11.32□□□□□ -0.6
VPS13D-205ENST00000473099 KLHL24Q6TFL4 600 aa11.32□□□□□ -0.6
VPS13D-205ENST00000473099 LRRN1Q6UXK5 716 aa11.32□□□□□ -0.6
VPS13D-205ENST00000473099 SYT9Q86SS6 491 aa11.32□□□□□ -0.6
VPS13D-205ENST00000473099 TUSC5Q8IXB3 177 aa11.32□□□□□ -0.6
VPS13D-205ENST00000473099 GJC3Q8NFK1 279 aa11.32□□□□□ -0.6
VPS13D-205ENST00000473099 WNT2BQ93097 391 aa11.32□□□□□ -0.6
VPS13D-205ENST00000473099 TMEM203Q969S6 136 aa11.32□□□□□ -0.6
VPS13D-205ENST00000473099 SLAMF6Q96DU3 332 aa11.32□□□□□ -0.6
VPS13D-205ENST00000473099 PGLYRP3Q96LB9 341 aa11.32□□□□□ -0.6
VPS13D-205ENST00000473099 MED18Q9BUE0 208 aa11.32□□□□□ -0.6
VPS13D-205ENST00000473099 CRLF2Q9HC73 371 aa11.32□□□□□ -0.6
VPS13D-205ENST00000473099 GPR35Q9HC97 309 aa11.32□□□□□ -0.6
VPS13D-205ENST00000473099 TMEM38BQ9NVV0 291 aa11.32□□□□□ -0.6
VPS13D-205ENST00000473099 SLCO1C1Q9NYB5 712 aa11.32□□□□□ -0.6
VPS13D-205ENST00000473099 CCDC59Q9P031 241 aaKnown RBP11.32□□□□□ -0.6
VPS13D-205ENST00000473099 GDF2Q9UK05 429 aaPredicted RBP11.32□□□□□ -0.6
VPS13D-205ENST00000473099 ZNF281Q9Y2X9 895 aa11.32□□□□□ -0.6
VPS13D-205ENST00000473099 LRP12Q9Y561 859 aa11.32□□□□□ -0.6
VPS13D-205ENST00000473099 LHFPL6Q9Y693 200 aa11.32□□□□□ -0.6
VPS13D-205ENST00000473099 A3GALT2U3KPV4 340 aa11.32□□□□□ -0.6
VPS13D-205ENST00000473099 CD8B2A6NJW9 211 aa11.31□□□□□ -0.6
VPS13D-205ENST00000473099 PRR32B1ATL7 298 aa11.31□□□□□ -0.6
VPS13D-205ENST00000473099 K7EM74 188 aa11.31□□□□□ -0.6
VPS13D-205ENST00000473099 TAF4O00268 1085 aa11.31□□□□□ -0.6
VPS13D-205ENST00000473099 WDR1O75083 606 aa11.31□□□□□ -0.6
VPS13D-205ENST00000473099 SS18L1O75177 396 aaPredicted RBP11.31□□□□□ -0.6
VPS13D-205ENST00000473099 FARS2O95363 451 aaKnown RBP11.31□□□□□ -0.6
VPS13D-205ENST00000473099 APOC1P02654 83 aa11.31□□□□□ -0.6
VPS13D-205ENST00000473099 PSKH1P11801 424 aa11.31□□□□□ -0.6
VPS13D-205ENST00000473099 MAPK3P27361 379 aaPredicted RBP11.31□□□□□ -0.6
VPS13D-205ENST00000473099 AGTR1P30556 359 aa11.31□□□□□ -0.6
VPS13D-205ENST00000473099 CDAP32320 146 aa11.31□□□□□ -0.6
VPS13D-205ENST00000473099 NTF4P34130 210 aa11.31□□□□□ -0.6
VPS13D-205ENST00000473099 OPRL1P41146 370 aa11.31□□□□□ -0.6
VPS13D-205ENST00000473099 PCBD1P61457 104 aa11.31□□□□□ -0.6
VPS13D-205ENST00000473099 GRB2P62993 217 aaKnown RBP11.31□□□□□ -0.6
VPS13D-205ENST00000473099 ROR2Q01974 943 aaKnown RBP11.31□□□□□ -0.6
VPS13D-205ENST00000473099 LSAMPQ13449 338 aa11.31□□□□□ -0.6
VPS13D-205ENST00000473099 RPTNQ6XPR3 784 aa11.31□□□□□ -0.6
VPS13D-205ENST00000473099 FGD2Q7Z6J4 655 aa11.31□□□□□ -0.6
VPS13D-205ENST00000473099 LINC00346Q8IVM7 164 aa11.31□□□□□ -0.6
VPS13D-205ENST00000473099 ZNF100Q8IYN0 542 aa11.31□□□□□ -0.6
VPS13D-205ENST00000473099 TEX19Q8NA77 164 aa11.31□□□□□ -0.6
VPS13D-205ENST00000473099 OR2G2Q8NGZ5 317 aa11.31□□□□□ -0.6
VPS13D-205ENST00000473099 NDNFQ8TB73 568 aa11.31□□□□□ -0.6
VPS13D-205ENST00000473099 GHSRQ92847 366 aa11.31□□□□□ -0.6
VPS13D-205ENST00000473099 NABP1Q96AH0 204 aa11.31□□□□□ -0.6
VPS13D-205ENST00000473099 ZNF775Q96BV0 537 aaPredicted RBP11.31□□□□□ -0.6
VPS13D-205ENST00000473099 DACH2Q96NX9 599 aa11.31□□□□□ -0.6
VPS13D-205ENST00000473099 ALKBH3Q96Q83 286 aaPredicted RBP11.31□□□□□ -0.6
VPS13D-205ENST00000473099 AMELYQ99218 206 aa11.31□□□□□ -0.6
VPS13D-205ENST00000473099 TM9SF2Q99805 663 aa11.31□□□□□ -0.6
VPS13D-205ENST00000473099 FOXB1Q99853 325 aa11.31□□□□□ -0.6
VPS13D-205ENST00000473099 ZNF416Q9BWM5 594 aa11.31□□□□□ -0.6
VPS13D-205ENST00000473099 MOB1AQ9H8S9 216 aa11.31□□□□□ -0.6
VPS13D-205ENST00000473099 EMC7Q9NPA0 242 aa11.31□□□□□ -0.6
VPS13D-205ENST00000473099 ASH2LQ9UBL3 628 aa11.31□□□□□ -0.6
VPS13D-205ENST00000473099 UPB1Q9UBR1 384 aa11.31□□□□□ -0.6
VPS13D-205ENST00000473099 EMC9Q9Y3B6 208 aa11.31□□□□□ -0.6
VPS13D-205ENST00000473099 GRIP1Q9Y3R0 1128 aa11.31□□□□□ -0.6
VPS13D-205ENST00000473099 SIRT4Q9Y6E7 314 aaPredicted RBP11.31□□□□□ -0.6
VPS13D-205ENST00000473099 LOC400499M0QZD8 3231 aa11.31□□□□□ -0.6
VPS13D-205ENST00000473099 CELSR3Q9NYQ7 3312 aa11.3□□□□□ -0.6
VPS13D-205ENST00000473099 FIGNL2A6NMB9 653 aa11.3□□□□□ -0.6
VPS13D-205ENST00000473099 PSMD9O00233 223 aa11.3□□□□□ -0.6
VPS13D-205ENST00000473099 MAGEB4O15481 346 aaPredicted RBP11.3□□□□□ -0.6
VPS13D-205ENST00000473099 SC5DO75845 299 aa11.3□□□□□ -0.6
VPS13D-205ENST00000473099 ARL6IP5O75915 188 aa11.3□□□□□ -0.6
VPS13D-205ENST00000473099 CLPXO76031 633 aa11.3□□□□□ -0.6
VPS13D-205ENST00000473099 RPP14O95059 124 aaKnown RBP11.3□□□□□ -0.6
VPS13D-205ENST00000473099 TGM6O95932 706 aa11.3□□□□□ -0.6
VPS13D-205ENST00000473099 PSMB10P40306 273 aa11.3□□□□□ -0.6
VPS13D-205ENST00000473099 HIST1H3AP68431 136 aa11.3□□□□□ -0.6
VPS13D-205ENST00000473099 SCRN3Q0VDG4 424 aa11.3□□□□□ -0.6
VPS13D-205ENST00000473099 ENDOGQ14249 297 aaKnown RBP11.3□□□□□ -0.6
VPS13D-205ENST00000473099 TAF13Q15543 124 aa11.3□□□□□ -0.6
VPS13D-205ENST00000473099 CEACAM16Q2WEN9 425 aa11.3□□□□□ -0.6
VPS13D-205ENST00000473099 HIST2H3PS2Q5TEC6 136 aa11.3□□□□□ -0.6
VPS13D-205ENST00000473099 TSPO2Q5TGU0 170 aa11.3□□□□□ -0.6
VPS13D-205ENST00000473099 C22orf42Q6IC83 251 aa11.3□□□□□ -0.6
VPS13D-205ENST00000473099 OR7E24Q6IFN5 339 aa11.3□□□□□ -0.6
VPS13D-205ENST00000473099 HIST2H3AQ71DI3 136 aa11.3□□□□□ -0.6
VPS13D-205ENST00000473099 ZNF627Q7L945 461 aa11.3□□□□□ -0.6
VPS13D-205ENST00000473099 OR5AK2Q8NH90 309 aa11.3□□□□□ -0.6
VPS13D-205ENST00000473099 ABHD4Q8TB40 342 aa11.3□□□□□ -0.6
VPS13D-205ENST00000473099 MAP6Q96JE9 813 aa11.3□□□□□ -0.6
VPS13D-205ENST00000473099 C4orf45Q96LM5 186 aa11.3□□□□□ -0.6
VPS13D-205ENST00000473099 ZFP3Q96NJ6 502 aa11.3□□□□□ -0.6
VPS13D-205ENST00000473099 TRIB1Q96RU8 372 aa11.3□□□□□ -0.6
VPS13D-205ENST00000473099 HDHD5Q9BXW7 423 aa11.3□□□□□ -0.6
VPS13D-205ENST00000473099 CENPMQ9NSP4 180 aa11.3□□□□□ -0.6
VPS13D-205ENST00000473099 DDX28Q9NUL7 540 aaKnown RBP11.3□□□□□ -0.6
VPS13D-205ENST00000473099 GALNT8Q9NY28 637 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms