RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 SPOCK1Q08629 439 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 FAM209AQ5JX71 171 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 TMEM205Q6UW68 189 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 MEIOBQ8N635 442 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 OR10G3Q8NGC4 313 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 OR5M1Q8NGP8 315 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 OR13C3Q8NGS6 347 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 OR8S1Q8NH09 359 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 HLA-CQ95604 372 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 DDIT4LQ96D03 193 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 SORCS2Q96PQ0 1159 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 UTP23Q9BRU9 249 aaKnown RBP7.99□□□□□ -1.13
SYNE1-217ENST00000466159 DPCDQ9BVM2 203 aaPredicted RBP7.99□□□□□ -1.13
SYNE1-217ENST00000466159 TMEM185BQ9H7F4 350 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 CKLFQ9UBR5 152 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 OR52A1Q9UKL2 312 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 RARRES3Q9UL19 164 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 HHLA2Q9UM44 414 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 COL6A3P12111 3177 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 EML6Q6ZMW3 1958 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 LOC107986453A0A1B0GWG9 222 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 LIPT2A6NK58 231 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 SIGLEC6O43699 453 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 GDF9O60383 454 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 OR2J2O76002 312 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 MPC2O95563 127 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 EPHA8P29322 1005 aaPredicted RBP7.99□□□□□ -1.13
SYNE1-217ENST00000466159 PRSS3P35030 304 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 BIDP55957 195 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 MFSD13AQ14CX5 517 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 PCK2Q16822 640 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 GLT8D1Q68CQ7 371 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 ZNF626Q68DY1 528 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 OR10K2Q6IF99 312 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 CPEB2Q7Z5Q1 589 aaKnown RBP7.99□□□□□ -1.13
SYNE1-217ENST00000466159 OR8H3Q8N146 312 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 FTMTQ8N4E7 242 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 OR6S1Q8NH40 331 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 GINS4Q9BRT9 223 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 PIPOXQ9P0Z9 390 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 PPP4R1LQ9P1A2 415 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 MYOTQ9UBF9 498 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 PPIEQ9UNP9 301 aaKnown RBP7.99□□□□□ -1.13
SYNE1-217ENST00000466159 A0A1W2PQ72 361 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 P2RY10O00398 339 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 ZNF208O43345 1280 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 CREBL2O60519 120 aaPredicted RBP7.99□□□□□ -1.13
SYNE1-217ENST00000466159 SLC22A5O76082 557 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 CD3DP04234 171 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 CSF1P09603 554 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 HOXD11P31277 338 aaPredicted RBP7.99□□□□□ -1.13
SYNE1-217ENST00000466159 FAUP35544 74 aaKnown RBP7.99□□□□□ -1.13
SYNE1-217ENST00000466159 PTGDSP41222 190 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 DNASE1L1P49184 302 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 SUMO3P55854 103 aaPredicted RBP7.99□□□□□ -1.13
SYNE1-217ENST00000466159 PSMA6P60900 246 aaKnown RBP7.99□□□□□ -1.13
SYNE1-217ENST00000466159 MYBPHQ13203 477 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 RBMS2Q15434 407 aaKnown RBP7.99□□□□□ -1.13
SYNE1-217ENST00000466159 NR0B2Q15466 257 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 ZNF385CQ66K41 422 aaPredicted RBP7.99□□□□□ -1.13
SYNE1-217ENST00000466159 DNM1P34Q6PK57 102 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 NHLRC1Q6VVB1 395 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 ZNF627Q7L945 461 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 JAGN1Q8N5M9 183 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 OR51S1Q8NGJ8 323 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 POC1BQ8TC44 478 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 MED30Q96HR3 178 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 CCDC74BQ96LY2 380 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 SPSB2Q99619 263 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 CMKLR1Q99788 373 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 CRB3Q9BUF7 120 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 ZMAT3Q9HA38 289 aaKnown RBP7.99□□□□□ -1.13
SYNE1-217ENST00000466159 SERINC1Q9NRX5 453 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 B3GAT1Q9P2W7 334 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 ADAMTS9Q9P2N4 1935 aa7.98□□□□□ -1.13
SYNE1-217ENST00000466159 MUC3AQ02505 3323 aa7.98□□□□□ -1.13
SYNE1-217ENST00000466159 TTLL8A6PVC2 850 aa7.98□□□□□ -1.13
SYNE1-217ENST00000466159 NOS1APO75052 506 aaPredicted RBP7.98□□□□□ -1.13
SYNE1-217ENST00000466159 RLN1P04808 185 aa7.98□□□□□ -1.13
SYNE1-217ENST00000466159 IL5P05113 134 aa7.98□□□□□ -1.13
SYNE1-217ENST00000466159 H2BFMP0C1H6 154 aa7.98□□□□□ -1.13
SYNE1-217ENST00000466159 CPN1P15169 458 aa7.98□□□□□ -1.13
SYNE1-217ENST00000466159 FSTP19883 344 aa7.98□□□□□ -1.13
SYNE1-217ENST00000466159 OR3A3P47888 321 aa7.98□□□□□ -1.13
SYNE1-217ENST00000466159 MECP2P51608 486 aaKnown RBP7.98□□□□□ -1.13
SYNE1-217ENST00000466159 ZNF41P51814 821 aaPredicted RBP7.98□□□□□ -1.13
SYNE1-217ENST00000466159 TSPAN5P62079 268 aa7.98□□□□□ -1.13
SYNE1-217ENST00000466159 PLPPR5Q32ZL2 321 aa7.98□□□□□ -1.13
SYNE1-217ENST00000466159 SLC36A1Q7Z2H8 476 aa7.98□□□□□ -1.13
SYNE1-217ENST00000466159 HIST2H2ABQ8IUE6 130 aaPredicted RBP7.98□□□□□ -1.13
SYNE1-217ENST00000466159 SPICQ8N5J4 248 aa7.98□□□□□ -1.13
SYNE1-217ENST00000466159 RNF138Q8WVD3 245 aa7.98□□□□□ -1.13
SYNE1-217ENST00000466159 PCNPQ8WW12 178 aaKnown RBP7.98□□□□□ -1.13
SYNE1-217ENST00000466159 C11orf40Q8WZ69 217 aa7.98□□□□□ -1.13
SYNE1-217ENST00000466159 TTC9Q92623 222 aa7.98□□□□□ -1.13
SYNE1-217ENST00000466159 METTL7AQ9H8H3 244 aa7.98□□□□□ -1.13
SYNE1-217ENST00000466159 GPN1Q9HCN4 374 aaPredicted RBP7.98□□□□□ -1.13
SYNE1-217ENST00000466159 OCIAD1Q9NX40 245 aa7.98□□□□□ -1.13
SYNE1-217ENST00000466159 B3GNT2Q9NY97 397 aa7.98□□□□□ -1.13
SYNE1-217ENST00000466159 TAS2R8Q9NYW2 309 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms