RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 NOSIPQ9Y314 301 aaKnown RBP10.55□□□□□ -0.72
CPSF3-202ENST00000460593 UBE2CO00762 179 aa10.55□□□□□ -0.72
CPSF3-202ENST00000460593 PMP2P02689 132 aa10.55□□□□□ -0.72
CPSF3-202ENST00000460593 CRHP06850 196 aa10.55□□□□□ -0.72
CPSF3-202ENST00000460593 HRH1P35367 487 aa10.55□□□□□ -0.72
CPSF3-202ENST00000460593 HGFACQ04756 655 aa10.55□□□□□ -0.72
CPSF3-202ENST00000460593 SKP2Q13309 424 aa10.55□□□□□ -0.72
CPSF3-202ENST00000460593 FBXO42Q6P3S6 717 aa10.55□□□□□ -0.72
CPSF3-202ENST00000460593 RD3Q7Z3Z2 195 aa10.55□□□□□ -0.72
CPSF3-202ENST00000460593 FJX1Q86VR8 437 aa10.55□□□□□ -0.72
CPSF3-202ENST00000460593 ZNF584Q8IVC4 421 aa10.55□□□□□ -0.72
CPSF3-202ENST00000460593 OR4C3Q8NH37 302 aa10.55□□□□□ -0.72
CPSF3-202ENST00000460593 OR10G6Q8NH81 332 aa10.55□□□□□ -0.72
CPSF3-202ENST00000460593 MARCH1Q8TCQ1 289 aa10.55□□□□□ -0.72
CPSF3-202ENST00000460593 MCHR2Q969V1 340 aa10.55□□□□□ -0.72
CPSF3-202ENST00000460593 TMEM100Q9NV29 134 aa10.55□□□□□ -0.72
CPSF3-202ENST00000460593 PRAMEF26H0Y7S4 382 aa10.55□□□□□ -0.72
CPSF3-202ENST00000460593 SLC17A2O00624 439 aa10.55□□□□□ -0.72
CPSF3-202ENST00000460593 CMPK1P30085 196 aa10.55□□□□□ -0.72
CPSF3-202ENST00000460593 VIPR2P41587 438 aa10.55□□□□□ -0.72
CPSF3-202ENST00000460593 ADPRHP54922 357 aa10.55□□□□□ -0.72
CPSF3-202ENST00000460593 RNASE10Q5GAN6 216 aaKnown RBP10.55□□□□□ -0.72
CPSF3-202ENST00000460593 OR2B11Q5JQS5 317 aa10.55□□□□□ -0.72
CPSF3-202ENST00000460593 ULK3Q6PHR2 472 aa10.55□□□□□ -0.72
CPSF3-202ENST00000460593 ZNF765Q7L2R6 523 aa10.55□□□□□ -0.72
CPSF3-202ENST00000460593 ZNF595Q8IYB9 648 aa10.55□□□□□ -0.72
CPSF3-202ENST00000460593 OR2I1PQ8NGU4 316 aa10.55□□□□□ -0.72
CPSF3-202ENST00000460593 GAL3ST3Q96A11 431 aa10.55□□□□□ -0.72
CPSF3-202ENST00000460593 SPACA7Q96KW9 195 aa10.55□□□□□ -0.72
CPSF3-202ENST00000460593 C4orf45Q96LM5 186 aa10.55□□□□□ -0.72
CPSF3-202ENST00000460593 PHB2Q99623 299 aa10.55□□□□□ -0.72
CPSF3-202ENST00000460593 SULT4A1Q9BR01 284 aa10.55□□□□□ -0.72
CPSF3-202ENST00000460593 PLA2G2EQ9NZK7 142 aa10.55□□□□□ -0.72
CPSF3-202ENST00000460593 B9D1Q9UPM9 204 aa10.55□□□□□ -0.72
CPSF3-202ENST00000460593 C11orf98E9PRG8 122 aa10.54□□□□□ -0.72
CPSF3-202ENST00000460593 STK17BO94768 372 aa10.54□□□□□ -0.72
CPSF3-202ENST00000460593 CD14P08571 375 aa10.54□□□□□ -0.72
CPSF3-202ENST00000460593 NME1P15531 152 aaKnown RBP10.54□□□□□ -0.72
CPSF3-202ENST00000460593 PSG6Q00889 435 aa10.54□□□□□ -0.72
CPSF3-202ENST00000460593 ITPRIPL2Q3MIP1 535 aa10.54□□□□□ -0.72
CPSF3-202ENST00000460593 DMRTC1Q5HYR2 192 aa10.54□□□□□ -0.72
CPSF3-202ENST00000460593 RPL7L1Q6DKI1 246 aaKnown RBP10.54□□□□□ -0.72
CPSF3-202ENST00000460593 PGAP1Q75T13 922 aa10.54□□□□□ -0.72
CPSF3-202ENST00000460593 TRAPPC6BQ86SZ2 158 aa10.54□□□□□ -0.72
CPSF3-202ENST00000460593 SLC25A42Q86VD7 318 aa10.54□□□□□ -0.72
CPSF3-202ENST00000460593 CDC20BQ86Y33 519 aa10.54□□□□□ -0.72
CPSF3-202ENST00000460593 FAM24BQ8N5W8 94 aa10.54□□□□□ -0.72
CPSF3-202ENST00000460593 SMIM3Q9BZL3 60 aa10.54□□□□□ -0.72
CPSF3-202ENST00000460593 TRIM2Q9C040 744 aa10.54□□□□□ -0.72
CPSF3-202ENST00000460593 SEBOXQ9HB31 216 aaPredicted RBP10.54□□□□□ -0.72
CPSF3-202ENST00000460593 DUSP22Q9NRW4 184 aa10.54□□□□□ -0.72
CPSF3-202ENST00000460593 GSKIPQ9P0R6 139 aa10.54□□□□□ -0.72
CPSF3-202ENST00000460593 LPAR3Q9UBY5 353 aa10.54□□□□□ -0.72
CPSF3-202ENST00000460593 IGKV1D-42A0A075B6H8 117 aa10.54□□□□□ -0.72
CPSF3-202ENST00000460593 M0R036 132 aa10.54□□□□□ -0.72
CPSF3-202ENST00000460593 OIP5O43482 229 aa10.54□□□□□ -0.72
CPSF3-202ENST00000460593 YIF1AO95070 293 aa10.54□□□□□ -0.72
CPSF3-202ENST00000460593 OR8U9P0C7N5 309 aa10.54□□□□□ -0.72
CPSF3-202ENST00000460593 HTR2CP28335 458 aa10.54□□□□□ -0.72
CPSF3-202ENST00000460593 ZNF77Q15935 545 aa10.54□□□□□ -0.72
CPSF3-202ENST00000460593 PRICKLE4Q2TBC4 344 aa10.54□□□□□ -0.72
CPSF3-202ENST00000460593 MESTQ5EB52 335 aa10.54□□□□□ -0.72
CPSF3-202ENST00000460593 ZNF425Q6IV72 752 aa10.54□□□□□ -0.72
CPSF3-202ENST00000460593 SLC30A7Q8NEW0 376 aa10.54□□□□□ -0.72
CPSF3-202ENST00000460593 OR8U1Q8NH10 309 aa10.54□□□□□ -0.72
CPSF3-202ENST00000460593 SLC25A43Q8WUT9 341 aaPredicted RBP10.54□□□□□ -0.72
CPSF3-202ENST00000460593 MITD1Q8WV92 249 aa10.54□□□□□ -0.72
CPSF3-202ENST00000460593 LCN9Q8WX39 176 aa10.54□□□□□ -0.72
CPSF3-202ENST00000460593 INTS12Q96CB8 462 aaKnown RBP10.54□□□□□ -0.72
CPSF3-202ENST00000460593 PFDN5Q99471 154 aa10.54□□□□□ -0.72
CPSF3-202ENST00000460593 SMCO4Q9NRQ5 59 aa10.54□□□□□ -0.72
CPSF3-202ENST00000460593 RTTNQ86VV8 2226 aa10.53□□□□□ -0.72
CPSF3-202ENST00000460593 A0A087WV62 115 aa10.53□□□□□ -0.72
CPSF3-202ENST00000460593 LOC101059948A0A1B0GTJ6 334 aa10.53□□□□□ -0.72
CPSF3-202ENST00000460593 YKT6O15498 198 aa10.53□□□□□ -0.72
CPSF3-202ENST00000460593 B3GALT2O43825 422 aa10.53□□□□□ -0.72
CPSF3-202ENST00000460593 S100A8P05109 93 aa10.53□□□□□ -0.72
CPSF3-202ENST00000460593 CTSBP07858 339 aa10.53□□□□□ -0.72
CPSF3-202ENST00000460593 ALOX5APP20292 161 aa10.53□□□□□ -0.72
CPSF3-202ENST00000460593 HNRNPA1L2Q32P51 320 aaKnown RBP10.53□□□□□ -0.72
CPSF3-202ENST00000460593 ALG10Q5BKT4 473 aa10.53□□□□□ -0.72
CPSF3-202ENST00000460593 FAM76BQ5HYJ3 339 aa10.53□□□□□ -0.72
CPSF3-202ENST00000460593 SLC35D3Q5M8T2 416 aa10.53□□□□□ -0.72
CPSF3-202ENST00000460593 ADAMTSL4Q6UY14 1074 aa10.53□□□□□ -0.72
CPSF3-202ENST00000460593 EDEM2Q9BV94 578 aa10.53□□□□□ -0.72
CPSF3-202ENST00000460593 SEC61A2Q9H9S3 476 aa10.53□□□□□ -0.72
CPSF3-202ENST00000460593 YBX2Q9Y2T7 364 aaKnown RBP10.53□□□□□ -0.72
CPSF3-202ENST00000460593 AMDHD2Q9Y303 409 aa10.53□□□□□ -0.72
CPSF3-202ENST00000460593 TEX13DA0A0J9YY54 714 aaPredicted RBP10.53□□□□□ -0.72
CPSF3-202ENST00000460593 HIDE1A8MVS5 230 aa10.53□□□□□ -0.72
CPSF3-202ENST00000460593 F8VVB4 439 aa10.53□□□□□ -0.72
CPSF3-202ENST00000460593 F8VWA3 439 aa10.53□□□□□ -0.72
CPSF3-202ENST00000460593 K7EQS6 105 aa10.53□□□□□ -0.72
CPSF3-202ENST00000460593 HEXAP06865 529 aa10.53□□□□□ -0.72
CPSF3-202ENST00000460593 RHOP08100 348 aa10.53□□□□□ -0.72
CPSF3-202ENST00000460593 SLC35G6P0C7Q6 338 aa10.53□□□□□ -0.72
CPSF3-202ENST00000460593 ADH5P11766 374 aa10.53□□□□□ -0.72
CPSF3-202ENST00000460593 GNB3P16520 340 aa10.53□□□□□ -0.72
CPSF3-202ENST00000460593 S100PP25815 95 aa10.53□□□□□ -0.72
CPSF3-202ENST00000460593 TLX1P31314 330 aaPredicted RBP10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms