RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 NPDC1Q9NQX5 325 aaPredicted RBP13.46□□□□□ -0.25
LDLR-202ENST00000455727 FLVCR2Q9UPI3 526 aa13.46□□□□□ -0.25
LDLR-202ENST00000455727 LOC102723996A0A087X1L8 192 aa13.46□□□□□ -0.26
LDLR-202ENST00000455727 IGKV1D-43A0A0B4J1Z2 117 aa13.46□□□□□ -0.26
LDLR-202ENST00000455727 RAD1O60671 282 aa13.46□□□□□ -0.26
LDLR-202ENST00000455727 ALDOBP05062 364 aa13.46□□□□□ -0.26
LDLR-202ENST00000455727 IL5P05113 134 aa13.46□□□□□ -0.26
LDLR-202ENST00000455727 BIDP55957 195 aa13.46□□□□□ -0.26
LDLR-202ENST00000455727 CAMK2DQ13557 499 aa13.46□□□□□ -0.26
LDLR-202ENST00000455727 THEM4Q5T1C6 240 aa13.46□□□□□ -0.26
LDLR-202ENST00000455727 C3orf33Q6P1S2 294 aa13.46□□□□□ -0.26
LDLR-202ENST00000455727 GLDNQ6ZMI3 551 aaPredicted RBP13.46□□□□□ -0.26
LDLR-202ENST00000455727 DACT3Q96B18 629 aaPredicted RBP13.46□□□□□ -0.26
LDLR-202ENST00000455727 SLC25A44Q96H78 314 aaPredicted RBP13.46□□□□□ -0.26
LDLR-202ENST00000455727 GPR137Q96N19 417 aa13.46□□□□□ -0.26
LDLR-202ENST00000455727 RASL10BQ96S79 203 aa13.46□□□□□ -0.26
LDLR-202ENST00000455727 GAREM1Q9H706 876 aa13.46□□□□□ -0.26
LDLR-202ENST00000455727 SCP2D1Q9UJQ7 156 aa13.46□□□□□ -0.26
LDLR-202ENST00000455727 MGAT4AQ9UM21 535 aa13.46□□□□□ -0.26
LDLR-202ENST00000455727 SPEGQ15772 3267 aa13.45□□□□□ -0.26
LDLR-202ENST00000455727 TMEM269A0A1B0GVZ9 245 aa13.45□□□□□ -0.26
LDLR-202ENST00000455727 SHISA8B8ZZ34 492 aa13.45□□□□□ -0.26
LDLR-202ENST00000455727 UBCP0CG48 685 aaKnown RBP13.45□□□□□ -0.26
LDLR-202ENST00000455727 CPN1P15169 458 aa13.45□□□□□ -0.26
LDLR-202ENST00000455727 ADH6P28332 368 aa13.45□□□□□ -0.26
LDLR-202ENST00000455727 HTR2CP28335 458 aa13.45□□□□□ -0.26
LDLR-202ENST00000455727 SNRPD2P62316 118 aaKnown RBP13.45□□□□□ -0.26
LDLR-202ENST00000455727 GALK2Q01415 458 aa13.45□□□□□ -0.26
LDLR-202ENST00000455727 ZNF239Q16600 458 aaKnown RBP13.45□□□□□ -0.26
LDLR-202ENST00000455727 LINC00303Q3SY05 128 aa13.45□□□□□ -0.26
LDLR-202ENST00000455727 PHF19Q5T6S3 580 aa13.45□□□□□ -0.26
LDLR-202ENST00000455727 LRFN4Q6PJG9 635 aa13.45□□□□□ -0.26
LDLR-202ENST00000455727 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.45□□□□□ -0.26
LDLR-202ENST00000455727 PLPP7Q8NBV4 271 aa13.45□□□□□ -0.26
LDLR-202ENST00000455727 OR6M1Q8NGM8 313 aa13.45□□□□□ -0.26
LDLR-202ENST00000455727 OR13C3Q8NGS6 347 aa13.45□□□□□ -0.26
LDLR-202ENST00000455727 IFI44Q8TCB0 444 aa13.45□□□□□ -0.26
LDLR-202ENST00000455727 ZNF436Q9C0F3 470 aaPredicted RBP13.45□□□□□ -0.26
LDLR-202ENST00000455727 FSCN3Q9NQT6 498 aa13.45□□□□□ -0.26
LDLR-202ENST00000455727 DLL4Q9NR61 685 aa13.45□□□□□ -0.26
LDLR-202ENST00000455727 TAS2R4Q9NYW5 299 aa13.45□□□□□ -0.26
LDLR-202ENST00000455727 TMEM272A0A1B0GTI8 110 aa13.45□□□□□ -0.26
LDLR-202ENST00000455727 LOC107986453A0A1B0GWG9 222 aa13.45□□□□□ -0.26
LDLR-202ENST00000455727 ARPC1BO15143 372 aaKnown RBP13.45□□□□□ -0.26
LDLR-202ENST00000455727 ALX3O95076 343 aa13.45□□□□□ -0.26
LDLR-202ENST00000455727 H2BFMP0C1H6 154 aa13.45□□□□□ -0.26
LDLR-202ENST00000455727 TDGF1P13385 188 aa13.45□□□□□ -0.26
LDLR-202ENST00000455727 EIF1P41567 113 aaKnown RBP13.45□□□□□ -0.26
LDLR-202ENST00000455727 SNTA1Q13424 505 aa13.45□□□□□ -0.26
LDLR-202ENST00000455727 PEAR1Q5VY43 1037 aaPredicted RBP13.45□□□□□ -0.26
LDLR-202ENST00000455727 BIVMQ86UB2 503 aa13.45□□□□□ -0.26
LDLR-202ENST00000455727 LINC00346Q8IVM7 164 aa13.45□□□□□ -0.26
LDLR-202ENST00000455727 FADS6Q8N9I5 356 aa13.45□□□□□ -0.26
LDLR-202ENST00000455727 PIGKQ92643 395 aa13.45□□□□□ -0.26
LDLR-202ENST00000455727 CYB5R1Q9UHQ9 305 aa13.45□□□□□ -0.26
LDLR-202ENST00000455727 TRAV18A0A075B6X5 111 aa13.44□□□□□ -0.26
LDLR-202ENST00000455727 LOC390937A0A1W2PQ73 354 aa13.44□□□□□ -0.26
LDLR-202ENST00000455727 C19orf67A6NJJ6 358 aa13.44□□□□□ -0.26
LDLR-202ENST00000455727 SNRPGP15A8MWD9 76 aa13.44□□□□□ -0.26
LDLR-202ENST00000455727 SULT1C2O00338 296 aa13.44□□□□□ -0.26
LDLR-202ENST00000455727 PRSS3P35030 304 aa13.44□□□□□ -0.26
LDLR-202ENST00000455727 DNASE1L1P49184 302 aa13.44□□□□□ -0.26
LDLR-202ENST00000455727 P2RY4P51582 365 aa13.44□□□□□ -0.26
LDLR-202ENST00000455727 CAPZA1P52907 286 aa13.44□□□□□ -0.26
LDLR-202ENST00000455727 ZP1P60852 638 aa13.44□□□□□ -0.26
LDLR-202ENST00000455727 PCOLCEQ15113 449 aa13.44□□□□□ -0.26
LDLR-202ENST00000455727 PCGF3Q3KNV8 242 aa13.44□□□□□ -0.26
LDLR-202ENST00000455727 C1orf100Q5SVJ3 147 aa13.44□□□□□ -0.26
LDLR-202ENST00000455727 HDDC2Q7Z4H3 204 aa13.44□□□□□ -0.26
LDLR-202ENST00000455727 UEVLDQ8IX04 471 aa13.44□□□□□ -0.26
LDLR-202ENST00000455727 SPICQ8N5J4 248 aa13.44□□□□□ -0.26
LDLR-202ENST00000455727 NKAIN3Q8N8D7 197 aa13.44□□□□□ -0.26
LDLR-202ENST00000455727 OR10H5Q8NGA6 315 aa13.44□□□□□ -0.26
LDLR-202ENST00000455727 OR11H4Q8NGC9 324 aa13.44□□□□□ -0.26
LDLR-202ENST00000455727 SLC25A43Q8WUT9 341 aaPredicted RBP13.44□□□□□ -0.26
LDLR-202ENST00000455727 C11orf40Q8WZ69 217 aa13.44□□□□□ -0.26
LDLR-202ENST00000455727 PTX4Q96A99 478 aa13.44□□□□□ -0.26
LDLR-202ENST00000455727 AKIRIN1Q9H9L7 192 aaPredicted RBP13.44□□□□□ -0.26
LDLR-202ENST00000455727 BEX1Q9HBH7 125 aa13.44□□□□□ -0.26
LDLR-202ENST00000455727 A0A0A6YYH2 397 aa13.44□□□□□ -0.26
LDLR-202ENST00000455727 A6NJ64 397 aa13.44□□□□□ -0.26
LDLR-202ENST00000455727 TP53I11O14683 189 aa13.44□□□□□ -0.26
LDLR-202ENST00000455727 GABRA1P14867 456 aa13.44□□□□□ -0.26
LDLR-202ENST00000455727 LAP3P28838 519 aa13.44□□□□□ -0.26
LDLR-202ENST00000455727 TRA2AQ13595 282 aaKnown RBP eCLIP13.44□□□□□ -0.26
LDLR-202ENST00000455727 GLYATL3Q5SZD4 288 aa13.44□□□□□ -0.26
LDLR-202ENST00000455727 TMEM81Q6P7N7 255 aa13.44□□□□□ -0.26
LDLR-202ENST00000455727 RHOUQ7L0Q8 258 aa13.44□□□□□ -0.26
LDLR-202ENST00000455727 LYPD6Q86Y78 171 aa13.44□□□□□ -0.26
LDLR-202ENST00000455727 FOXRED1Q96CU9 486 aaPredicted RBP13.44□□□□□ -0.26
LDLR-202ENST00000455727 RADILQ96JH8 1075 aa13.44□□□□□ -0.26
LDLR-202ENST00000455727 EMC6Q9BV81 110 aa13.44□□□□□ -0.26
LDLR-202ENST00000455727 ATG5Q9H1Y0 275 aa13.44□□□□□ -0.26
LDLR-202ENST00000455727 PTGES2Q9H7Z7 377 aa13.44□□□□□ -0.26
LDLR-202ENST00000455727 GPN1Q9HCN4 374 aaPredicted RBP13.44□□□□□ -0.26
LDLR-202ENST00000455727 PCDHGA5Q9Y5G8 931 aa13.44□□□□□ -0.26
LDLR-202ENST00000455727 LOC102725191A0A1B0GVB3 256 aa13.43□□□□□ -0.26
LDLR-202ENST00000455727 LDLRAD4O15165 306 aa13.43□□□□□ -0.26
LDLR-202ENST00000455727 RBMS2Q15434 407 aaKnown RBP13.43□□□□□ -0.26
LDLR-202ENST00000455727 SLC25A25Q6KCM7 469 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms