RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 PRSS37A4D1T9 235 aa10.72□□□□□ -0.69
MSH6-204ENST00000445503 UPK3AO75631 287 aa10.72□□□□□ -0.69
MSH6-204ENST00000445503 SNAPC5O75971 98 aa10.72□□□□□ -0.69
MSH6-204ENST00000445503 UBBP0CG47 229 aa10.72□□□□□ -0.69
MSH6-204ENST00000445503 UBCP0CG48 685 aaKnown RBP10.72□□□□□ -0.69
MSH6-204ENST00000445503 EMP2P54851 167 aa10.72□□□□□ -0.69
MSH6-204ENST00000445503 HSD17B7P56937 341 aa10.72□□□□□ -0.69
MSH6-204ENST00000445503 RPS27AP62979 156 aaKnown RBP10.72□□□□□ -0.69
MSH6-204ENST00000445503 UBA52P62987 128 aaKnown RBP10.72□□□□□ -0.69
MSH6-204ENST00000445503 SLC22A6Q4U2R8 563 aa10.72□□□□□ -0.69
MSH6-204ENST00000445503 CLVS2Q5SYC1 327 aa10.72□□□□□ -0.69
MSH6-204ENST00000445503 LINC01590Q5TEZ4 76 aa10.72□□□□□ -0.69
MSH6-204ENST00000445503 C1orf140Q5VVS0 124 aa10.72□□□□□ -0.69
MSH6-204ENST00000445503 FJX1Q86VR8 437 aa10.72□□□□□ -0.69
MSH6-204ENST00000445503 GKN2Q86XP6 184 aa10.72□□□□□ -0.69
MSH6-204ENST00000445503 OR6N1Q8NGY5 312 aa10.72□□□□□ -0.69
MSH6-204ENST00000445503 PPP1R1CQ8WVI7 109 aa10.72□□□□□ -0.69
MSH6-204ENST00000445503 PNPLA2Q96AD5 504 aa10.72□□□□□ -0.69
MSH6-204ENST00000445503 CMTM3Q96MX0 182 aa10.72□□□□□ -0.69
MSH6-204ENST00000445503 FBRSQ9HAH7 460 aa10.72□□□□□ -0.69
MSH6-204ENST00000445503 ZNF701Q9NV72 531 aaPredicted RBP10.72□□□□□ -0.69
MSH6-204ENST00000445503 PIPOXQ9P0Z9 390 aa10.72□□□□□ -0.69
MSH6-204ENST00000445503 ASXL3Q9C0F0 2248 aa10.71□□□□□ -0.69
MSH6-204ENST00000445503 ZNF208O43345 1280 aa10.71□□□□□ -0.69
MSH6-204ENST00000445503 CTLA4P16410 223 aa10.71□□□□□ -0.69
MSH6-204ENST00000445503 PVALBP20472 110 aaPredicted RBP10.71□□□□□ -0.69
MSH6-204ENST00000445503 SLC25A1P53007 311 aa10.71□□□□□ -0.69
MSH6-204ENST00000445503 SGCAQ16586 387 aa10.71□□□□□ -0.69
MSH6-204ENST00000445503 FAM180AQ6UWF9 173 aa10.71□□□□□ -0.69
MSH6-204ENST00000445503 UNQ9370/PRO34162Q6UXP9 181 aa10.71□□□□□ -0.69
MSH6-204ENST00000445503 ABHD12BQ7Z5M8 362 aaPredicted RBP10.71□□□□□ -0.69
MSH6-204ENST00000445503 ADGRE4PQ86SQ3 457 aa10.71□□□□□ -0.69
MSH6-204ENST00000445503 GVQW1Q8N7I0 195 aa10.71□□□□□ -0.69
MSH6-204ENST00000445503 ELSPBP1Q96BH3 223 aa10.71□□□□□ -0.69
MSH6-204ENST00000445503 FOXRED1Q96CU9 486 aaPredicted RBP10.71□□□□□ -0.69
MSH6-204ENST00000445503 ZDHHC12Q96GR4 267 aa10.71□□□□□ -0.69
MSH6-204ENST00000445503 JSRP1Q96MG2 331 aaPredicted RBP10.71□□□□□ -0.69
MSH6-204ENST00000445503 HRH4Q9H3N8 390 aa10.71□□□□□ -0.69
MSH6-204ENST00000445503 BANF2Q9H503 90 aa10.71□□□□□ -0.69
MSH6-204ENST00000445503 VSX1Q9NZR4 365 aaPredicted RBP10.71□□□□□ -0.69
MSH6-204ENST00000445503 MBD2Q9UBB5 411 aa10.71□□□□□ -0.69
MSH6-204ENST00000445503 A0A0D9SG52 128 aa10.71□□□□□ -0.69
MSH6-204ENST00000445503 STK17BO94768 372 aa10.71□□□□□ -0.69
MSH6-204ENST00000445503 CPN1P15169 458 aa10.71□□□□□ -0.69
MSH6-204ENST00000445503 AMY2BP19961 511 aa10.71□□□□□ -0.69
MSH6-204ENST00000445503 SFTPDP35247 375 aa10.71□□□□□ -0.69
MSH6-204ENST00000445503 ZNF117Q03924 483 aa10.71□□□□□ -0.69
MSH6-204ENST00000445503 EGR3Q06889 387 aa10.71□□□□□ -0.69
MSH6-204ENST00000445503 SWI5Q1ZZU3 235 aa10.71□□□□□ -0.69
MSH6-204ENST00000445503 ATG4DQ86TL0 474 aaPredicted RBP10.71□□□□□ -0.69
MSH6-204ENST00000445503 HAVCR2Q8TDQ0 301 aa10.71□□□□□ -0.69
MSH6-204ENST00000445503 SLC46A1Q96NT5 459 aa10.71□□□□□ -0.69
MSH6-204ENST00000445503 PRRT1Q99946 306 aa10.71□□□□□ -0.69
MSH6-204ENST00000445503 SLC25A21Q9BQT8 299 aaPredicted RBP10.71□□□□□ -0.69
MSH6-204ENST00000445503 LDHAL6BQ9BYZ2 381 aaPredicted RBP10.71□□□□□ -0.69
MSH6-204ENST00000445503 ACKR4Q9NPB9 350 aa10.71□□□□□ -0.69
MSH6-204ENST00000445503 PLXNA2O75051 1894 aa10.71□□□□□ -0.7
MSH6-204ENST00000445503 A0A1B0GV50 99 aa10.71□□□□□ -0.7
MSH6-204ENST00000445503 TGFBR3LH3BV60 316 aa10.71□□□□□ -0.7
MSH6-204ENST00000445503 ZNF254O75437 659 aa10.71□□□□□ -0.7
MSH6-204ENST00000445503 CRTAPO75718 401 aaPredicted RBP10.71□□□□□ -0.7
MSH6-204ENST00000445503 NSA2O95478 260 aaKnown RBP10.71□□□□□ -0.7
MSH6-204ENST00000445503 WNT11O96014 354 aa10.71□□□□□ -0.7
MSH6-204ENST00000445503 NPY4RP50391 375 aa10.71□□□□□ -0.7
MSH6-204ENST00000445503 CLRN1P58418 232 aa10.71□□□□□ -0.7
MSH6-204ENST00000445503 NKAPLQ5M9Q1 402 aa10.71□□□□□ -0.7
MSH6-204ENST00000445503 ZNF585AQ6P3V2 769 aa10.71□□□□□ -0.7
MSH6-204ENST00000445503 ZNF704Q6ZNC4 412 aaPredicted RBP10.71□□□□□ -0.7
MSH6-204ENST00000445503 GLRX5Q86SX6 157 aa10.71□□□□□ -0.7
MSH6-204ENST00000445503 STPG2Q8N412 459 aa10.71□□□□□ -0.7
MSH6-204ENST00000445503 TMEM234Q8WY98 164 aa10.71□□□□□ -0.7
MSH6-204ENST00000445503 CTHRC1Q96CG8 243 aa10.71□□□□□ -0.7
MSH6-204ENST00000445503 CHMP1AQ9HD42 196 aaPredicted RBP10.71□□□□□ -0.7
MSH6-204ENST00000445503 NPDC1Q9NQX5 325 aaPredicted RBP10.71□□□□□ -0.7
MSH6-204ENST00000445503 LRP12Q9Y561 859 aa10.71□□□□□ -0.7
MSH6-204ENST00000445503 FOXS1O43638 330 aa10.7□□□□□ -0.7
MSH6-204ENST00000445503 HOXB5P09067 269 aa10.7□□□□□ -0.7
MSH6-204ENST00000445503 MYF5P13349 255 aa10.7□□□□□ -0.7
MSH6-204ENST00000445503 GNB3P16520 340 aa10.7□□□□□ -0.7
MSH6-204ENST00000445503 DRD1P21728 446 aa10.7□□□□□ -0.7
MSH6-204ENST00000445503 PPICP45877 212 aa10.7□□□□□ -0.7
MSH6-204ENST00000445503 GPR3P46089 330 aa10.7□□□□□ -0.7
MSH6-204ENST00000445503 UBE2IP63279 158 aaKnown RBP10.7□□□□□ -0.7
MSH6-204ENST00000445503 MFGE8Q08431 387 aaPredicted RBP10.7□□□□□ -0.7
MSH6-204ENST00000445503 GGTLC2Q14390 218 aa10.7□□□□□ -0.7
MSH6-204ENST00000445503 FBXO46Q6PJ61 603 aaPredicted RBP10.7□□□□□ -0.7
MSH6-204ENST00000445503 CDC20BQ86Y33 519 aa10.7□□□□□ -0.7
MSH6-204ENST00000445503 ADAMTS18Q8TE60 1221 aa10.7□□□□□ -0.7
MSH6-204ENST00000445503 AIFM2Q9BRQ8 373 aa10.7□□□□□ -0.7
MSH6-204ENST00000445503 IGKV1D-42A0A075B6H8 117 aa10.7□□□□□ -0.7
MSH6-204ENST00000445503 ZNF726A6NNF4 738 aa10.7□□□□□ -0.7
MSH6-204ENST00000445503 SHISA8B8ZZ34 492 aa10.7□□□□□ -0.7
MSH6-204ENST00000445503 KIR3DL2P43630 455 aa10.7□□□□□ -0.7
MSH6-204ENST00000445503 DHRS2Q13268 280 aa10.7□□□□□ -0.7
MSH6-204ENST00000445503 UBXN2BQ14CS0 331 aa10.7□□□□□ -0.7
MSH6-204ENST00000445503 TMEM244Q5VVB8 128 aa10.7□□□□□ -0.7
MSH6-204ENST00000445503 LCN10Q6JVE6 187 aa10.7□□□□□ -0.7
MSH6-204ENST00000445503 PRSS35Q8N3Z0 413 aa10.7□□□□□ -0.7
MSH6-204ENST00000445503 ZNF416Q9BWM5 594 aa10.7□□□□□ -0.7
MSH6-204ENST00000445503 METTL7AQ9H8H3 244 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms