RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 TAAR3PQ9P1P4 343 aa13.04□□□□□ -0.32
LIMS3-201ENST00000437679 MYEF2Q9P2K5 600 aaKnown RBP13.04□□□□□ -0.32
LIMS3-201ENST00000437679 POLR1DQ9Y2S0 133 aa13.04□□□□□ -0.32
LIMS3-201ENST00000437679 FN1P02751 2386 aaKnown RBP13.04□□□□□ -0.32
LIMS3-201ENST00000437679 A0A096LNT2 108 aa13.03□□□□□ -0.32
LIMS3-201ENST00000437679 DOK2O60496 412 aa13.03□□□□□ -0.32
LIMS3-201ENST00000437679 MPZL1O95297 269 aa13.03□□□□□ -0.32
LIMS3-201ENST00000437679 CLPTM1O96005 669 aa13.03□□□□□ -0.32
LIMS3-201ENST00000437679 CST1P01037 141 aa13.03□□□□□ -0.32
LIMS3-201ENST00000437679 IGFBP1P08833 259 aaPredicted RBP13.03□□□□□ -0.32
LIMS3-201ENST00000437679 GSTM3P21266 225 aa13.03□□□□□ -0.32
LIMS3-201ENST00000437679 USF1P22415 310 aaPredicted RBP13.03□□□□□ -0.32
LIMS3-201ENST00000437679 GCH1P30793 250 aa13.03□□□□□ -0.32
LIMS3-201ENST00000437679 WNT5AP41221 380 aa13.03□□□□□ -0.32
LIMS3-201ENST00000437679 HTR5AP47898 357 aa13.03□□□□□ -0.32
LIMS3-201ENST00000437679 ARHGDIAP52565 204 aa13.03□□□□□ -0.32
LIMS3-201ENST00000437679 FLOT2Q14254 428 aa13.03□□□□□ -0.32
LIMS3-201ENST00000437679 GK3PQ14409 553 aa13.03□□□□□ -0.32
LIMS3-201ENST00000437679 KCNMB1Q16558 191 aa13.03□□□□□ -0.32
LIMS3-201ENST00000437679 ZNF718Q3SXZ3 478 aa13.03□□□□□ -0.32
LIMS3-201ENST00000437679 SLC35F1Q5T1Q4 408 aa13.03□□□□□ -0.32
LIMS3-201ENST00000437679 RASSF6Q6ZTQ3 369 aa13.03□□□□□ -0.32
LIMS3-201ENST00000437679 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.03□□□□□ -0.32
LIMS3-201ENST00000437679 SPATA24Q86W54 205 aa13.03□□□□□ -0.32
LIMS3-201ENST00000437679 SDR9C7Q8NEX9 313 aa13.03□□□□□ -0.32
LIMS3-201ENST00000437679 OR52E2Q8NGJ4 325 aa13.03□□□□□ -0.32
LIMS3-201ENST00000437679 ABHD4Q8TB40 342 aa13.03□□□□□ -0.32
LIMS3-201ENST00000437679 UBASH3BQ8TF42 649 aa13.03□□□□□ -0.32
LIMS3-201ENST00000437679 CANT1Q8WVQ1 401 aa13.03□□□□□ -0.32
LIMS3-201ENST00000437679 TSSK2Q96PF2 358 aa13.03□□□□□ -0.32
LIMS3-201ENST00000437679 DGCR6LQ9BY27 220 aa13.03□□□□□ -0.32
LIMS3-201ENST00000437679 ELOVL3Q9HB03 270 aa13.03□□□□□ -0.32
LIMS3-201ENST00000437679 RPRD1BQ9NQG5 326 aaKnown RBP13.03□□□□□ -0.32
LIMS3-201ENST00000437679 PLEK2Q9NYT0 353 aa13.03□□□□□ -0.32
LIMS3-201ENST00000437679 IL20Q9NYY1 176 aa13.03□□□□□ -0.32
LIMS3-201ENST00000437679 ASH2LQ9UBL3 628 aa13.03□□□□□ -0.32
LIMS3-201ENST00000437679 B9D1Q9UPM9 204 aa13.03□□□□□ -0.32
LIMS3-201ENST00000437679 SONP18583 2426 aaKnown RBP13.03□□□□□ -0.32
LIMS3-201ENST00000437679 IGLV3-9A0A075B6K5 115 aa13.02□□□□□ -0.33
LIMS3-201ENST00000437679 IGLV1-36A0A0B4J1U3 117 aa13.02□□□□□ -0.33
LIMS3-201ENST00000437679 GNGT2O14610 69 aa13.02□□□□□ -0.33
LIMS3-201ENST00000437679 MT-ND5P03915 603 aa13.02□□□□□ -0.33
LIMS3-201ENST00000437679 NAT2P11245 290 aa13.02□□□□□ -0.33
LIMS3-201ENST00000437679 HOXB4P17483 251 aaPredicted RBP13.02□□□□□ -0.33
LIMS3-201ENST00000437679 NR4A2P43354 598 aa13.02□□□□□ -0.33
LIMS3-201ENST00000437679 GLO1Q04760 184 aa13.02□□□□□ -0.33
LIMS3-201ENST00000437679 KRTAP1-1Q07627 177 aa13.02□□□□□ -0.33
LIMS3-201ENST00000437679 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.02□□□□□ -0.33
LIMS3-201ENST00000437679 GGTLC2Q14390 218 aa13.02□□□□□ -0.33
LIMS3-201ENST00000437679 ALKBH6Q3KRA9 238 aa13.02□□□□□ -0.33
LIMS3-201ENST00000437679 OTPQ5XKR4 325 aa13.02□□□□□ -0.33
LIMS3-201ENST00000437679 VASH1Q7L8A9 365 aaPredicted RBP13.02□□□□□ -0.33
LIMS3-201ENST00000437679 ZNF101Q8IZC7 436 aa13.02□□□□□ -0.33
LIMS3-201ENST00000437679 OR6V1Q8N148 313 aa13.02□□□□□ -0.33
LIMS3-201ENST00000437679 ZNF786Q8N393 782 aa13.02□□□□□ -0.33
LIMS3-201ENST00000437679 OR10G2Q8NGC3 310 aa13.02□□□□□ -0.33
LIMS3-201ENST00000437679 C4orf45Q96LM5 186 aa13.02□□□□□ -0.33
LIMS3-201ENST00000437679 RACGAP1Q9H0H5 632 aa13.02□□□□□ -0.33
LIMS3-201ENST00000437679 YY1AP1Q9H869 796 aa13.02□□□□□ -0.33
LIMS3-201ENST00000437679 TBC1D23Q9NUY8 699 aa13.02□□□□□ -0.33
LIMS3-201ENST00000437679 OR6C68A6NDL8 312 aa13.01□□□□□ -0.33
LIMS3-201ENST00000437679 VWC2LB2RUY7 222 aa13.01□□□□□ -0.33
LIMS3-201ENST00000437679 DCTN6O00399 190 aa13.01□□□□□ -0.33
LIMS3-201ENST00000437679 BHLHE40O14503 412 aa13.01□□□□□ -0.33
LIMS3-201ENST00000437679 TLX2O43763 284 aaPredicted RBP13.01□□□□□ -0.33
LIMS3-201ENST00000437679 CD5LO43866 347 aa13.01□□□□□ -0.33
LIMS3-201ENST00000437679 ABHD16AO95870 558 aa13.01□□□□□ -0.33
LIMS3-201ENST00000437679 GPANK1O95872 356 aa13.01□□□□□ -0.33
LIMS3-201ENST00000437679 GAAP10253 952 aa13.01□□□□□ -0.33
LIMS3-201ENST00000437679 RASSF2P50749 326 aa13.01□□□□□ -0.33
LIMS3-201ENST00000437679 PPP1CBP62140 327 aa13.01□□□□□ -0.33
LIMS3-201ENST00000437679 BNIP1Q12981 228 aa13.01□□□□□ -0.33
LIMS3-201ENST00000437679 TMEM249Q2WGJ8 235 aa13.01□□□□□ -0.33
LIMS3-201ENST00000437679 SLC36A3Q495N2 470 aa13.01□□□□□ -0.33
LIMS3-201ENST00000437679 SPATA46Q5T0L3 261 aa13.01□□□□□ -0.33
LIMS3-201ENST00000437679 TMEM154Q6P9G4 183 aa13.01□□□□□ -0.33
LIMS3-201ENST00000437679 RFPL4BQ6ZWI9 263 aa13.01□□□□□ -0.33
LIMS3-201ENST00000437679 ZBTB46Q86UZ6 589 aa13.01□□□□□ -0.33
LIMS3-201ENST00000437679 GJC3Q8NFK1 279 aa13.01□□□□□ -0.33
LIMS3-201ENST00000437679 SLC25A40Q8TBP6 338 aa13.01□□□□□ -0.33
LIMS3-201ENST00000437679 GIPC3Q8TF64 312 aa13.01□□□□□ -0.33
LIMS3-201ENST00000437679 POM121Q96HA1 1249 aa13.01□□□□□ -0.33
LIMS3-201ENST00000437679 TSSK6Q9BXA6 273 aa13.01□□□□□ -0.33
LIMS3-201ENST00000437679 PLA2G12AQ9BZM1 189 aa13.01□□□□□ -0.33
LIMS3-201ENST00000437679 HINT3Q9NQE9 182 aaKnown RBP13.01□□□□□ -0.33
LIMS3-201ENST00000437679 BAIAP2Q9UQB8 552 aa13.01□□□□□ -0.33
LIMS3-201ENST00000437679 POMPQ9Y244 141 aa13.01□□□□□ -0.33
LIMS3-201ENST00000437679 YLPM1P49750 1951 aaKnown RBP13.01□□□□□ -0.33
LIMS3-201ENST00000437679 C17orf100A8MU93 164 aa13□□□□□ -0.33
LIMS3-201ENST00000437679 INAFM1C9JVW0 142 aa13□□□□□ -0.33
LIMS3-201ENST00000437679 H3BSA7 217 aa13□□□□□ -0.33
LIMS3-201ENST00000437679 GSC2O15499 205 aa13□□□□□ -0.33
LIMS3-201ENST00000437679 ICMTO60725 284 aa13□□□□□ -0.33
LIMS3-201ENST00000437679 E2F6O75461 281 aa13□□□□□ -0.33
LIMS3-201ENST00000437679 ATP5HO75947 161 aa13□□□□□ -0.33
LIMS3-201ENST00000437679 IGHV3-13P01766 116 aa13□□□□□ -0.33
LIMS3-201ENST00000437679 HLA-DQA2P01906 255 aa13□□□□□ -0.33
LIMS3-201ENST00000437679 GIFP27352 417 aa13□□□□□ -0.33
LIMS3-201ENST00000437679 TEKQ02763 1124 aa13□□□□□ -0.33
LIMS3-201ENST00000437679 MEP1BQ16820 701 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms