RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 AMBNQ9NP70 447 aa10.63□□□□□ -0.71
PTPRF-208ENST00000437607 PLCXD1Q9NUJ7 323 aa10.63□□□□□ -0.71
PTPRF-208ENST00000437607 GLTPQ9NZD2 209 aa10.63□□□□□ -0.71
PTPRF-208ENST00000437607 ING1Q9UK53 422 aaPredicted RBP10.63□□□□□ -0.71
PTPRF-208ENST00000437607 IGLV1-36A0A0B4J1U3 117 aa10.62□□□□□ -0.71
PTPRF-208ENST00000437607 A0A1W2PPL8 197 aa10.62□□□□□ -0.71
PTPRF-208ENST00000437607 OVOL3O00110 214 aa10.62□□□□□ -0.71
PTPRF-208ENST00000437607 RGS10O43665 173 aa10.62□□□□□ -0.71
PTPRF-208ENST00000437607 ZNF432O94892 652 aa10.62□□□□□ -0.71
PTPRF-208ENST00000437607 RAB36O95755 333 aa10.62□□□□□ -0.71
PTPRF-208ENST00000437607 MRPL3P09001 348 aaKnown RBP10.62□□□□□ -0.71
PTPRF-208ENST00000437607 ZNF84P51523 738 aa10.62□□□□□ -0.71
PTPRF-208ENST00000437607 ATP5J2P56134 94 aa10.62□□□□□ -0.71
PTPRF-208ENST00000437607 RAB40BQ12829 278 aa10.62□□□□□ -0.71
PTPRF-208ENST00000437607 KLHL22Q53GT1 634 aa10.62□□□□□ -0.71
PTPRF-208ENST00000437607 NHLRC1Q6VVB1 395 aa10.62□□□□□ -0.71
PTPRF-208ENST00000437607 ZC3HAV1Q7Z2W4 902 aaKnown RBP10.62□□□□□ -0.71
PTPRF-208ENST00000437607 ABHD12BQ7Z5M8 362 aaPredicted RBP10.62□□□□□ -0.71
PTPRF-208ENST00000437607 ZBTB46Q86UZ6 589 aa10.62□□□□□ -0.71
PTPRF-208ENST00000437607 WDFY1Q8IWB7 410 aa10.62□□□□□ -0.71
PTPRF-208ENST00000437607 OR51L1Q8NGJ5 315 aa10.62□□□□□ -0.71
PTPRF-208ENST00000437607 OR51G2Q8NGK0 314 aa10.62□□□□□ -0.71
PTPRF-208ENST00000437607 NSMAFQ92636 917 aa10.62□□□□□ -0.71
PTPRF-208ENST00000437607 AKAP1Q92667 903 aaKnown RBP eCLIP10.62□□□□□ -0.71
PTPRF-208ENST00000437607 TMEM54Q969K7 222 aa10.62□□□□□ -0.71
PTPRF-208ENST00000437607 DDOQ99489 341 aa10.62□□□□□ -0.71
PTPRF-208ENST00000437607 REPIN1Q9BWE0 567 aaKnown RBP10.62□□□□□ -0.71
PTPRF-208ENST00000437607 ACTR6Q9GZN1 396 aa10.62□□□□□ -0.71
PTPRF-208ENST00000437607 CCDC90BQ9GZT6 254 aa10.62□□□□□ -0.71
PTPRF-208ENST00000437607 OR10A4Q9H209 315 aa10.62□□□□□ -0.71
PTPRF-208ENST00000437607 C12orf49Q9H741 205 aa10.62□□□□□ -0.71
PTPRF-208ENST00000437607 SRA1Q9HD15 236 aaKnown RBP10.62□□□□□ -0.71
PTPRF-208ENST00000437607 VCX3AQ9NNX9 186 aa10.62□□□□□ -0.71
PTPRF-208ENST00000437607 PSORS1C1Q9UIG5 152 aa10.62□□□□□ -0.71
PTPRF-208ENST00000437607 LAMP3Q9UQV4 416 aa10.62□□□□□ -0.71
PTPRF-208ENST00000437607 POLR1DQ9Y2S0 133 aa10.62□□□□□ -0.71
PTPRF-208ENST00000437607 SNX5Q9Y5X3 404 aa10.62□□□□□ -0.71
PTPRF-208ENST00000437607 MALRD1Q5VYJ5 2156 aa10.62□□□□□ -0.71
PTPRF-208ENST00000437607 RNF223E7ERA6 249 aa10.61□□□□□ -0.71
PTPRF-208ENST00000437607 ZNF587BE7ETH6 402 aa10.61□□□□□ -0.71
PTPRF-208ENST00000437607 PTGES3LE9PB15 166 aa10.61□□□□□ -0.71
PTPRF-208ENST00000437607 DCTN6O00399 190 aa10.61□□□□□ -0.71
PTPRF-208ENST00000437607 TMCC2O75069 709 aa10.61□□□□□ -0.71
PTPRF-208ENST00000437607 APOL3O95236 402 aa10.61□□□□□ -0.71
PTPRF-208ENST00000437607 FADS2O95864 444 aaKnown RBP10.61□□□□□ -0.71
PTPRF-208ENST00000437607 QDPRP09417 244 aa10.61□□□□□ -0.71
PTPRF-208ENST00000437607 DANCRP0C864 163 aa10.61□□□□□ -0.71
PTPRF-208ENST00000437607 MYL12AP19105 171 aa10.61□□□□□ -0.71
PTPRF-208ENST00000437607 PSMB1P20618 241 aaKnown RBP10.61□□□□□ -0.71
PTPRF-208ENST00000437607 NAA10P41227 235 aaPredicted RBP10.61□□□□□ -0.71
PTPRF-208ENST00000437607 GUCA1AP43080 201 aaPredicted RBP10.61□□□□□ -0.71
PTPRF-208ENST00000437607 ACTC1P68032 377 aa10.61□□□□□ -0.71
PTPRF-208ENST00000437607 ACTA1P68133 377 aa10.61□□□□□ -0.71
PTPRF-208ENST00000437607 SLC35A2P78381 396 aa10.61□□□□□ -0.71
PTPRF-208ENST00000437607 GGTLC2Q14390 218 aa10.61□□□□□ -0.71
PTPRF-208ENST00000437607 TSC22D1Q15714 1073 aa10.61□□□□□ -0.71
PTPRF-208ENST00000437607 CLEC12BQ2HXU8 276 aa10.61□□□□□ -0.71
PTPRF-208ENST00000437607 C10orf128Q5T292 105 aa10.61□□□□□ -0.71
PTPRF-208ENST00000437607 ADAM5Q6NVV9 412 aa10.61□□□□□ -0.71
PTPRF-208ENST00000437607 BEND4Q6ZU67 534 aa10.61□□□□□ -0.71
PTPRF-208ENST00000437607 SHFQ7M4L6 423 aa10.61□□□□□ -0.71
PTPRF-208ENST00000437607 ERI1Q8IV48 349 aaKnown RBP10.61□□□□□ -0.71
PTPRF-208ENST00000437607 OR6V1Q8N148 313 aa10.61□□□□□ -0.71
PTPRF-208ENST00000437607 UBE2J2Q8N2K1 259 aa10.61□□□□□ -0.71
PTPRF-208ENST00000437607 SVOPQ8N4V2 548 aa10.61□□□□□ -0.71
PTPRF-208ENST00000437607 OR10H5Q8NGA6 315 aa10.61□□□□□ -0.71
PTPRF-208ENST00000437607 OR6N2Q8NGY6 317 aa10.61□□□□□ -0.71
PTPRF-208ENST00000437607 NEUROG1Q92886 237 aa10.61□□□□□ -0.71
PTPRF-208ENST00000437607 PTP4A1Q93096 173 aa10.61□□□□□ -0.71
PTPRF-208ENST00000437607 MCHR2Q969V1 340 aa10.61□□□□□ -0.71
PTPRF-208ENST00000437607 NMD3Q96D46 503 aaKnown RBP10.61□□□□□ -0.71
PTPRF-208ENST00000437607 LGALS12Q96DT0 336 aa10.61□□□□□ -0.71
PTPRF-208ENST00000437607 INTS14Q96SY0 518 aa10.61□□□□□ -0.71
PTPRF-208ENST00000437607 RHNO1Q9BSD3 238 aa10.61□□□□□ -0.71
PTPRF-208ENST00000437607 LINC00470Q9BZP3 86 aa10.61□□□□□ -0.71
PTPRF-208ENST00000437607 UPB1Q9UBR1 384 aa10.61□□□□□ -0.71
PTPRF-208ENST00000437607 B9D1Q9UPM9 204 aa10.61□□□□□ -0.71
PTPRF-208ENST00000437607 COMMD3-BMI1R4GMX3 469 aa10.61□□□□□ -0.71
PTPRF-208ENST00000437607 ARFGEF3Q5TH69 2177 aa10.6□□□□□ -0.71
PTPRF-208ENST00000437607 A0A087WXM4 84 aa10.6□□□□□ -0.71
PTPRF-208ENST00000437607 MYL12BO14950 172 aa10.6□□□□□ -0.71
PTPRF-208ENST00000437607 DHHO43323 396 aa10.6□□□□□ -0.71
PTPRF-208ENST00000437607 MRPS14O60783 128 aaKnown RBP10.6□□□□□ -0.71
PTPRF-208ENST00000437607 CDK1P06493 297 aa10.6□□□□□ -0.71
PTPRF-208ENST00000437607 SOD3P08294 240 aa10.6□□□□□ -0.71
PTPRF-208ENST00000437607 SLC15A1P46059 708 aa10.6□□□□□ -0.71
PTPRF-208ENST00000437607 OR3A2P47893 321 aa10.6□□□□□ -0.71
PTPRF-208ENST00000437607 ROR2Q01974 943 aaKnown RBP10.6□□□□□ -0.71
PTPRF-208ENST00000437607 DBPQ10586 325 aaPredicted RBP10.6□□□□□ -0.71
PTPRF-208ENST00000437607 ST3GAL4Q11206 333 aa10.6□□□□□ -0.71
PTPRF-208ENST00000437607 HIST3H3Q16695 136 aa10.6□□□□□ -0.71
PTPRF-208ENST00000437607 LINC01590Q5TEZ4 76 aa10.6□□□□□ -0.71
PTPRF-208ENST00000437607 ZNF773Q6PK81 442 aa10.6□□□□□ -0.71
PTPRF-208ENST00000437607 SLC25A47Q6Q0C1 308 aa10.6□□□□□ -0.71
PTPRF-208ENST00000437607 SEZ6L2Q6UXD5 910 aa10.6□□□□□ -0.71
PTPRF-208ENST00000437607 B3GLCTQ6Y288 498 aa10.6□□□□□ -0.71
PTPRF-208ENST00000437607 NUFIP2Q7Z417 695 aaKnown RBP10.6□□□□□ -0.71
PTPRF-208ENST00000437607 ZSCAN2Q7Z7L9 614 aaPredicted RBP10.6□□□□□ -0.71
PTPRF-208ENST00000437607 GLB1L2Q8IW92 636 aa10.6□□□□□ -0.71
PTPRF-208ENST00000437607 GABRG1Q8N1C3 465 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms