RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 NECAB1Q8N987 351 aa3.4□□□□□ -1.87
HMGB3-203ENST00000430118 C12orf29Q8N999 325 aa3.4□□□□□ -1.87
HMGB3-203ENST00000430118 SYT14Q8NB59 555 aa3.4□□□□□ -1.87
HMGB3-203ENST00000430118 CHDHQ8NE62 594 aaPredicted RBP3.4□□□□□ -1.87
HMGB3-203ENST00000430118 BEST4Q8NFU0 473 aa3.4□□□□□ -1.87
HMGB3-203ENST00000430118 ZFAND1Q8TCF1 268 aa3.4□□□□□ -1.87
HMGB3-203ENST00000430118 EMG1Q92979 244 aaKnown RBP3.4□□□□□ -1.87
HMGB3-203ENST00000430118 CPNE4Q96A23 557 aaPredicted RBP3.4□□□□□ -1.87
HMGB3-203ENST00000430118 NTAN1Q96AB6 310 aa3.4□□□□□ -1.87
HMGB3-203ENST00000430118 FAM131CQ96AQ9 280 aa3.4□□□□□ -1.87
HMGB3-203ENST00000430118 SH3YL1Q96HL8 342 aaPredicted RBP3.4□□□□□ -1.87
HMGB3-203ENST00000430118 AKR1E2Q96JD6 320 aa3.4□□□□□ -1.87
HMGB3-203ENST00000430118 RNF170Q96K19 258 aa3.4□□□□□ -1.87
HMGB3-203ENST00000430118 BTN2A3PQ96KV6 586 aa3.4□□□□□ -1.87
HMGB3-203ENST00000430118 CHP1Q99653 195 aa3.4□□□□□ -1.87
HMGB3-203ENST00000430118 CLEC7AQ9BXN2 247 aa3.4□□□□□ -1.87
HMGB3-203ENST00000430118 ANKRD60Q9BZ19 345 aa3.4□□□□□ -1.87
HMGB3-203ENST00000430118 BCL2L14Q9BZR8 327 aa3.4□□□□□ -1.87
HMGB3-203ENST00000430118 SLC22A4Q9H015 551 aa3.4□□□□□ -1.87
HMGB3-203ENST00000430118 ALX4Q9H161 411 aaPredicted RBP3.4□□□□□ -1.87
HMGB3-203ENST00000430118 OR51V1Q9H2C8 321 aa3.4□□□□□ -1.87
HMGB3-203ENST00000430118 LRRN3Q9H3W5 708 aa3.4□□□□□ -1.87
HMGB3-203ENST00000430118 NIPAL2Q9H841 368 aa3.4□□□□□ -1.87
HMGB3-203ENST00000430118 NHEJ1Q9H9Q4 299 aaPredicted RBP3.4□□□□□ -1.87
HMGB3-203ENST00000430118 CALHM2Q9HA72 323 aa3.4□□□□□ -1.87
HMGB3-203ENST00000430118 EFCAB1Q9HAE3 211 aa3.4□□□□□ -1.87
HMGB3-203ENST00000430118 C19orf12Q9NSK7 152 aa3.4□□□□□ -1.87
HMGB3-203ENST00000430118 ZDHHC18Q9NUE0 388 aa3.4□□□□□ -1.87
HMGB3-203ENST00000430118 UFSP2Q9NUQ7 469 aa3.4□□□□□ -1.87
HMGB3-203ENST00000430118 NUDT15Q9NV35 164 aa3.4□□□□□ -1.87
HMGB3-203ENST00000430118 EXD2Q9NVH0 621 aa3.4□□□□□ -1.87
HMGB3-203ENST00000430118 MAT2BQ9NZL9 334 aa3.4□□□□□ -1.87
HMGB3-203ENST00000430118 RCOR3Q9P2K3 495 aaPredicted RBP3.4□□□□□ -1.87
HMGB3-203ENST00000430118 GHRLQ9UBU3 117 aa3.4□□□□□ -1.87
HMGB3-203ENST00000430118 SLC9A8Q9Y2E8 581 aa3.4□□□□□ -1.87
HMGB3-203ENST00000430118 NDUFAF1Q9Y375 327 aa3.4□□□□□ -1.87
HMGB3-203ENST00000430118 RNF115Q9Y4L5 304 aa3.4□□□□□ -1.87
HMGB3-203ENST00000430118 CSMD2Q7Z408 3487 aa3.4□□□□□ -1.87
HMGB3-203ENST00000430118 AKAP9Q99996 3911 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 ITPR3Q14573 2671 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 LRBAP50851 2863 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 IGKV2D-30A0A075B6S6 120 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 A0A0X1KG70 313 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 MEIOCA2RUB1 952 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 TMEM210A6NLX4 147 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 ZNF729A6NN14 1252 aaPredicted RBP3.39□□□□□ -1.87
HMGB3-203ENST00000430118 PP2D1A8MPX8 630 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 ZNF724A8MTY0 619 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 C10orf142B7Z368 130 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 H0Y8G0 127 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 H0YIV9 168 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 J3QRK9 145 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 ZNF195O14628 629 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 AIM2O14862 343 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 ARHGEF9O43307 516 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 CALUO43852 315 aaPredicted RBP3.39□□□□□ -1.87
HMGB3-203ENST00000430118 LMX1BO60663 402 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 EIF1BO60739 113 aaKnown RBP3.39□□□□□ -1.87
HMGB3-203ENST00000430118 DPM1O60762 260 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 RAMP1O60894 148 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 ZNF780AO75290 641 aaPredicted RBP3.39□□□□□ -1.87
HMGB3-203ENST00000430118 SERPINA5P05154 406 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 CDK1P06493 297 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 FABP1P07148 127 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 FBP1P09467 338 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 ZNF30P17039 623 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 ADORA2BP29275 332 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 CHRNB4P30926 498 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 CD70P32970 193 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 EIF1P41567 113 aaKnown RBP3.39□□□□□ -1.87
HMGB3-203ENST00000430118 RPS5P46782 204 aaKnown RBP3.39□□□□□ -1.87
HMGB3-203ENST00000430118 CEBPDP49716 269 aaPredicted RBP3.39□□□□□ -1.87
HMGB3-203ENST00000430118 RGS4P49798 205 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 EMDP50402 254 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 P2RY4P51582 365 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 SLC7A2P52569 658 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 RIDAP52758 137 aaKnown RBP3.39□□□□□ -1.87
HMGB3-203ENST00000430118 SNRPD1P62314 119 aaKnown RBP3.39□□□□□ -1.87
HMGB3-203ENST00000430118 CCL7P80098 99 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 CALCOCO2Q13137 446 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 FADDQ13158 208 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 PNOCQ13519 176 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 KIAA0141Q14154 515 aaPredicted RBP3.39□□□□□ -1.87
HMGB3-203ENST00000430118 TRIP13Q15645 432 aaPredicted RBP3.39□□□□□ -1.87
HMGB3-203ENST00000430118 SNRNP35Q16560 246 aaKnown RBP3.39□□□□□ -1.87
HMGB3-203ENST00000430118 EXOC3L2Q2M3D2 409 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 FFAR4Q5NUL3 377 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 RABGAP1LQ5R372 815 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 ATAD3CQ5T2N8 411 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 TTC23Q5W5X9 447 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 PYHIN1Q6K0P9 492 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 LCLAT1Q6UWP7 414 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 TFAP2EQ6VUC0 442 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 SPNS3Q6ZMD2 512 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 GCNT7Q6ZNI0 430 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 ZNF720Q7Z2F6 126 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 ANKRD37Q7Z713 158 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 LUZP2Q86TE4 346 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 ACOT1Q86TX2 421 aa3.39□□□□□ -1.87
HMGB3-203ENST00000430118 CYP4Z2PQ8N1L4 340 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms