RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, human

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS13A-208	ENST00000423463	FMO6P	O60774	539 aa		2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	SHOX2	O60902	331 aa	Predicted RBP	2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	BCAS1	O75363	584 aa	Predicted RBP	2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	GCM2	O75603	506 aa	Predicted RBP	2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	ZNF432	O94892	652 aa		2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	TGM6	O95932	706 aa		2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	LGI1	O95970	557 aa		2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	FAM107A	O95990	144 aa		2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	OPN1LW	P04000	364 aa		2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	GKN3P	P0CG01	181 aa		2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	CXCR1	P25024	350 aa		2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	SFTPD	P35247	375 aa		2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	ASCL1	P50553	236 aa		2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	MNAT1	P51948	309 aa		2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	POLR2H	P52434	150 aa	Known RBP	2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	ZNF136	P52737	540 aa		2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	CSNK2A1	P68400	391 aa	Predicted RBP	2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	SELPLG	Q14242	412 aa		2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	PDK3	Q15120	406 aa		2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	PON3	Q15166	354 aa		2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	SYT14P1	Q58G82	188 aa		2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	C3orf33	Q6P1S2	294 aa		2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	SPSB3	Q6PJ21	355 aa		2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	C5orf46	Q6UWT4	87 aa		2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	MICU2	Q8IYU8	434 aa		2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	C10orf111	Q8N326	155 aa		2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	ACBD4	Q8NC06	268 aa		2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	CCDC197	Q8NCU1	140 aa		2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	ATP6V1C2	Q8NEY4	427 aa		2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	SLC26A7	Q8TE54	656 aa		2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	DNAJA4	Q8WW22	397 aa	Predicted RBP	2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	ZNF524	Q96C55	264 aa		2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	DDIT4L	Q96D03	193 aa		2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	ZHX1-C8orf76	Q96EF9	292 aa		2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	GMPPA	Q96IJ6	420 aa	Predicted RBP	2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	ZNF559	Q9BR84	538 aa		2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	SRSF8	Q9BRL6	282 aa	Known RBP	2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	UCK2	Q9BZX2	261 aa		2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	COQ10B	Q9H8M1	238 aa		2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	RNF122	Q9H9V4	155 aa		2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	C12orf10	Q9HB07	376 aa		2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	SEBOX	Q9HB31	216 aa	Predicted RBP	2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	TMEM27	Q9HBJ8	222 aa		2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	FANCF	Q9NPI8	374 aa		2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	CTPS2	Q9NRF8	586 aa		2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	NDE1	Q9NXR1	346 aa		2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	MRPL15	Q9P015	296 aa	Known RBP	2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	RPS6KB2	Q9UBS0	482 aa		2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	CHRNA9	Q9UGM1	479 aa		2.18	□□□□□ -2.06
VPS13A-208	ENST00000423463	EML6	Q6ZMW3	1958 aa		2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463	ZNF407	Q9C0G0	2248 aa		2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463	DNAJC13	O75165	2243 aa		2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463		A0A1B0GUV1	79 aa		2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463		A0A1W2PNV4	684 aa		2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463	TMEM72	A0PK05	275 aa		2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463	ELOVL7	A1L3X0	281 aa		2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463		A8MVM7	634 aa		2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463	PRAC2	D3DTV9	90 aa		2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463		H0YC42	278 aa		2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463	SULT2B1	O00204	365 aa		2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463	TNFSF11	O14788	317 aa		2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463	OGG1	O15527	345 aa		2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463	EIF1B	O60739	113 aa	Known RBP	2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463	SS18L1	O75177	396 aa	Predicted RBP	2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463	TNFSF13	O75888	250 aa		2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463	AQP8	O94778	261 aa		2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463	PLG	P00747	810 aa	Predicted RBP	2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463	PNMT	P11086	282 aa		2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463	PRG2	P13727	222 aa		2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463	COX6B1	P14854	86 aa		2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463	DAO	P14920	347 aa		2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463	ITGA2	P17301	1181 aa		2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463	SHC1	P29353	583 aa		2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463	BDKRB2	P30411	391 aa		2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463	KDELR2	P33947	212 aa		2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463	TPD52	P55327	224 aa	Predicted RBP	2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463	CTBP2	P56545	445 aa		2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463	RGS8	P57771	180 aa	Predicted RBP	2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463	PSME3	P61289	254 aa		2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463	SLC35A1	P78382	337 aa		2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463	LIPE	Q05469	1076 aa		2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463	DMTN	Q08495	405 aa		2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463	GUSBP1	Q15486	140 aa		2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463	DUSP7	Q16829	419 aa		2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463	PNLIPRP3	Q17RR3	467 aa		2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463	GPR139	Q6DWJ6	353 aa		2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463	ULK3	Q6PHR2	472 aa		2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463	C6orf89	Q6UWU4	347 aa		2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463	FCRLA	Q7L513	359 aa		2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463	RANBP3L	Q86VV4	465 aa	Predicted RBP	2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463	CADM2	Q8N3J6	435 aa		2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463	RELL2	Q8NC24	303 aa	Predicted RBP	2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463	OR2T12	Q8NG77	320 aa		2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463	OR52E4	Q8NGH9	312 aa		2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463	OR6S1	Q8NH40	331 aa		2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463	FNDC9	Q8TBE3	224 aa		2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463	SECTM1	Q8WVN6	248 aa		2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463	PROX1	Q92786	737 aa		2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463	RNASE6	Q93091	150 aa	Known RBP	2.17	□□□□□ -2.06
VPS13A-208	ENST00000423463	STARD4	Q96DR4	205 aa		2.17	□□□□□ -2.06

Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms