RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 CENPBD1B2RD01 187 aa6.79□□□□□ -1.32
VIM-202ENST00000421459 PPIAL4DF5H284 164 aa6.79□□□□□ -1.32
VIM-202ENST00000421459 TMEM178BH3BS89 294 aa6.79□□□□□ -1.32
VIM-202ENST00000421459 J3KTA2 159 aa6.79□□□□□ -1.32
VIM-202ENST00000421459 ANGPT2O15123 496 aa6.79□□□□□ -1.32
VIM-202ENST00000421459 HOXA3O43365 443 aaPredicted RBP6.79□□□□□ -1.32
VIM-202ENST00000421459 OR5F1O95221 314 aa6.79□□□□□ -1.32
VIM-202ENST00000421459 ABHD16AO95870 558 aa6.79□□□□□ -1.32
VIM-202ENST00000421459 DBHP09172 617 aa6.79□□□□□ -1.32
VIM-202ENST00000421459 WNT2P09544 360 aa6.79□□□□□ -1.32
VIM-202ENST00000421459 PPIAL4FP0DN26 164 aa6.79□□□□□ -1.32
VIM-202ENST00000421459 IFI30P13284 250 aa6.79□□□□□ -1.32
VIM-202ENST00000421459 SELEP16581 610 aa6.79□□□□□ -1.32
VIM-202ENST00000421459 ARHGDIAP52565 204 aa6.79□□□□□ -1.32
VIM-202ENST00000421459 PRSS12P56730 875 aa6.79□□□□□ -1.32
VIM-202ENST00000421459 KRTAP10-3P60369 221 aa6.79□□□□□ -1.32
VIM-202ENST00000421459 RPL27P61353 136 aaKnown RBP6.79□□□□□ -1.32
VIM-202ENST00000421459 PAX2Q02962 417 aa6.79□□□□□ -1.32
VIM-202ENST00000421459 PAX8Q06710 450 aa6.79□□□□□ -1.32
VIM-202ENST00000421459 SF3A3Q12874 501 aaKnown RBP eCLIP6.79□□□□□ -1.32
VIM-202ENST00000421459 FHL1Q13642 323 aa6.79□□□□□ -1.32
VIM-202ENST00000421459 NANOGP8Q6NSW7 305 aa6.79□□□□□ -1.32
VIM-202ENST00000421459 BRD3OSQ6XYD6 125 aa6.79□□□□□ -1.32
VIM-202ENST00000421459 CCDC80Q76M96 950 aa6.79□□□□□ -1.32
VIM-202ENST00000421459 PARP8Q8N3A8 854 aa6.79□□□□□ -1.32
VIM-202ENST00000421459 KLHL36Q8N4N3 616 aa6.79□□□□□ -1.32
VIM-202ENST00000421459 KIR3DL3Q8N743 410 aa6.79□□□□□ -1.32
VIM-202ENST00000421459 ATG16L2Q8NAA4 619 aa6.79□□□□□ -1.32
VIM-202ENST00000421459 C19orf18Q8NEA5 215 aa6.79□□□□□ -1.32
VIM-202ENST00000421459 OR10AD1Q8NGE0 317 aa6.79□□□□□ -1.32
VIM-202ENST00000421459 LIPHQ8WWY8 451 aa6.79□□□□□ -1.32
VIM-202ENST00000421459 SLC25A28Q96A46 364 aa6.79□□□□□ -1.32
VIM-202ENST00000421459 TMIGD2Q96BF3 282 aa6.79□□□□□ -1.32
VIM-202ENST00000421459 BPIFA2Q96DR5 249 aa6.79□□□□□ -1.32
VIM-202ENST00000421459 SAMD8Q96LT4 415 aa6.79□□□□□ -1.32
VIM-202ENST00000421459 RBP7Q96R05 134 aa6.79□□□□□ -1.32
VIM-202ENST00000421459 OR2V2Q96R30 315 aa6.79□□□□□ -1.32
VIM-202ENST00000421459 DIRC2Q96SL1 478 aa6.79□□□□□ -1.32
VIM-202ENST00000421459 GPA33Q99795 319 aa6.79□□□□□ -1.32
VIM-202ENST00000421459 MRI1Q9BV20 369 aa6.79□□□□□ -1.32
VIM-202ENST00000421459 SMURF2Q9HAU4 748 aa6.79□□□□□ -1.32
VIM-202ENST00000421459 TMEM165Q9HC07 324 aa6.79□□□□□ -1.32
VIM-202ENST00000421459 GCM1Q9NP62 436 aa6.79□□□□□ -1.32
VIM-202ENST00000421459 MED4Q9NPJ6 270 aa6.79□□□□□ -1.32
VIM-202ENST00000421459 POLE4Q9NR33 117 aa6.79□□□□□ -1.32
VIM-202ENST00000421459 CYSLTR2Q9NS75 346 aa6.79□□□□□ -1.32
VIM-202ENST00000421459 PDP1Q9P0J1 537 aaPredicted RBP6.79□□□□□ -1.32
VIM-202ENST00000421459 PPP1R3CQ9UQK1 317 aa6.79□□□□□ -1.32
VIM-202ENST00000421459 POLR3KQ9Y2Y1 108 aaPredicted RBP6.79□□□□□ -1.32
VIM-202ENST00000421459 MED31Q9Y3C7 131 aa6.79□□□□□ -1.32
VIM-202ENST00000421459 SNX13Q9Y5W8 968 aa6.79□□□□□ -1.32
VIM-202ENST00000421459 TRAV40A0A0B4J280 105 aa6.78□□□□□ -1.32
VIM-202ENST00000421459 ICMTO60725 284 aa6.78□□□□□ -1.32
VIM-202ENST00000421459 ZNF26P17031 533 aaPredicted RBP6.78□□□□□ -1.32
VIM-202ENST00000421459 LIPAP38571 399 aa6.78□□□□□ -1.32
VIM-202ENST00000421459 PMELP40967 661 aa6.78□□□□□ -1.32
VIM-202ENST00000421459 RBM34P42696 430 aaKnown RBP6.78□□□□□ -1.32
VIM-202ENST00000421459 HTR5AP47898 357 aa6.78□□□□□ -1.32
VIM-202ENST00000421459 IL13RA1P78552 427 aa6.78□□□□□ -1.32
VIM-202ENST00000421459 DEFB112Q30KQ8 113 aa6.78□□□□□ -1.32
VIM-202ENST00000421459 TMEM155Q4W5P6 130 aa6.78□□□□□ -1.32
VIM-202ENST00000421459 ESCO2Q56NI9 601 aa6.78□□□□□ -1.32
VIM-202ENST00000421459 TTMPQ5BVD1 217 aa6.78□□□□□ -1.32
VIM-202ENST00000421459 RUSC1-AS1Q66K80 236 aa6.78□□□□□ -1.32
VIM-202ENST00000421459 OR2T2Q6IF00 324 aa6.78□□□□□ -1.32
VIM-202ENST00000421459 TBPL2Q6SJ96 375 aa6.78□□□□□ -1.32
VIM-202ENST00000421459 LYPD2Q6UXB3 125 aa6.78□□□□□ -1.32
VIM-202ENST00000421459 FOXL2NBQ6ZUU3 175 aa6.78□□□□□ -1.32
VIM-202ENST00000421459 SPATC1Q76KD6 591 aa6.78□□□□□ -1.32
VIM-202ENST00000421459 CALHM3Q86XJ0 350 aa6.78□□□□□ -1.32
VIM-202ENST00000421459 SLC30A8Q8IWU4 369 aa6.78□□□□□ -1.32
VIM-202ENST00000421459 ALDH16A1Q8IZ83 802 aa6.78□□□□□ -1.32
VIM-202ENST00000421459 SPICQ8N5J4 248 aa6.78□□□□□ -1.32
VIM-202ENST00000421459 POU5F2Q8N7G0 328 aa6.78□□□□□ -1.32
VIM-202ENST00000421459 OR13C2Q8NGS9 318 aa6.78□□□□□ -1.32
VIM-202ENST00000421459 HAVCR1Q96D42 359 aa6.78□□□□□ -1.32
VIM-202ENST00000421459 ALG12Q9BV10 488 aa6.78□□□□□ -1.32
VIM-202ENST00000421459 WDR76Q9H967 626 aa6.78□□□□□ -1.32
VIM-202ENST00000421459 ELOVL3Q9HB03 270 aa6.78□□□□□ -1.32
VIM-202ENST00000421459 PTTG3PQ9NZH4 202 aa6.78□□□□□ -1.32
VIM-202ENST00000421459 A4GNTQ9UNA3 340 aa6.78□□□□□ -1.32
VIM-202ENST00000421459 HIF3AQ9Y2N7 669 aa6.78□□□□□ -1.32
VIM-202ENST00000421459 ADAM18Q9Y3Q7 739 aa6.78□□□□□ -1.32
VIM-202ENST00000421459 FAM181BA6NEQ2 426 aa6.77□□□□□ -1.33
VIM-202ENST00000421459 POM121CA8CG34 1229 aa6.77□□□□□ -1.33
VIM-202ENST00000421459 C12orf71A8MTZ7 269 aa6.77□□□□□ -1.33
VIM-202ENST00000421459 A8MXK9 166 aa6.77□□□□□ -1.33
VIM-202ENST00000421459 FXYD1O00168 92 aa6.77□□□□□ -1.33
VIM-202ENST00000421459 DOK2O60496 412 aa6.77□□□□□ -1.33
VIM-202ENST00000421459 PLATP00750 562 aa6.77□□□□□ -1.33
VIM-202ENST00000421459 RPS2P15880 293 aaKnown RBP6.77□□□□□ -1.33
VIM-202ENST00000421459 TNFRSF1AP19438 455 aa6.77□□□□□ -1.33
VIM-202ENST00000421459 KITLGP21583 273 aa6.77□□□□□ -1.33
VIM-202ENST00000421459 MSR1P21757 451 aa6.77□□□□□ -1.33
VIM-202ENST00000421459 TNFSF4P23510 183 aa6.77□□□□□ -1.33
VIM-202ENST00000421459 MDH2P40926 338 aaKnown RBP6.77□□□□□ -1.33
VIM-202ENST00000421459 MMP16P51512 607 aa6.77□□□□□ -1.33
VIM-202ENST00000421459 PCBD1P61457 104 aa6.77□□□□□ -1.33
VIM-202ENST00000421459 RELBQ01201 579 aa6.77□□□□□ -1.33
VIM-202ENST00000421459 LRRC23Q53EV4 343 aaPredicted RBP6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms