RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, human

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPRF-205	ENST00000414879	SCAND1	P57086	179 aa		10.84	□□□□□ -0.67
PTPRF-205	ENST00000414879	FUT7	Q11130	342 aa		10.84	□□□□□ -0.67
PTPRF-205	ENST00000414879	TNK1	Q13470	666 aa		10.84	□□□□□ -0.67
PTPRF-205	ENST00000414879	ISX	Q2M1V0	245 aa		10.84	□□□□□ -0.67
PTPRF-205	ENST00000414879	CHCHD2P9	Q5T1J5	151 aa	Predicted RBP	10.84	□□□□□ -0.67
PTPRF-205	ENST00000414879	PLXDC2	Q6UX71	529 aa		10.84	□□□□□ -0.67
PTPRF-205	ENST00000414879	LSR	Q86X29	649 aa	Predicted RBP	10.84	□□□□□ -0.67
PTPRF-205	ENST00000414879	FAM83F	Q8NEG4	500 aa	Predicted RBP	10.84	□□□□□ -0.67
PTPRF-205	ENST00000414879	OR56B2P	Q8NGI1	322 aa		10.84	□□□□□ -0.67
PTPRF-205	ENST00000414879	OR6S1	Q8NH40	331 aa		10.84	□□□□□ -0.67
PTPRF-205	ENST00000414879	NUDT8	Q8WV74	236 aa		10.84	□□□□□ -0.67
PTPRF-205	ENST00000414879	UBL7	Q96S82	380 aa	Predicted RBP	10.84	□□□□□ -0.67
PTPRF-205	ENST00000414879	SIGLEC7	Q9Y286	467 aa		10.84	□□□□□ -0.67
PTPRF-205	ENST00000414879	ZSWIM8	A7E2V4	1837 aa		10.84	□□□□□ -0.67
PTPRF-205	ENST00000414879		A0A1W2PPV9	198 aa		10.84	□□□□□ -0.67
PTPRF-205	ENST00000414879	C2orf72	A6NCS6	295 aa		10.84	□□□□□ -0.67
PTPRF-205	ENST00000414879	TMEM200C	A6NKL6	621 aa		10.84	□□□□□ -0.67
PTPRF-205	ENST00000414879	GIF	P27352	417 aa		10.84	□□□□□ -0.67
PTPRF-205	ENST00000414879	CDK5	Q00535	292 aa		10.84	□□□□□ -0.67
PTPRF-205	ENST00000414879	ZNF92	Q03936	586 aa		10.84	□□□□□ -0.67
PTPRF-205	ENST00000414879	COL9A2	Q14055	689 aa	Predicted RBP	10.84	□□□□□ -0.67
PTPRF-205	ENST00000414879	EBP	Q15125	230 aa	Known RBP	10.84	□□□□□ -0.67
PTPRF-205	ENST00000414879	OGFOD3	Q6PK18	319 aa		10.84	□□□□□ -0.67
PTPRF-205	ENST00000414879	APOOL	Q6UXV4	268 aa		10.84	□□□□□ -0.67
PTPRF-205	ENST00000414879	ZNF687	Q8N1G0	1237 aa		10.84	□□□□□ -0.67
PTPRF-205	ENST00000414879	DTX3	Q8N9I9	347 aa		10.84	□□□□□ -0.67
PTPRF-205	ENST00000414879	KIRREL1	Q96J84	757 aa		10.84	□□□□□ -0.67
PTPRF-205	ENST00000414879	OPALIN	Q96PE5	141 aa		10.84	□□□□□ -0.67
PTPRF-205	ENST00000414879	TMEM246	Q9BRR3	403 aa		10.84	□□□□□ -0.67
PTPRF-205	ENST00000414879	ABHD6	Q9BV23	337 aa		10.84	□□□□□ -0.67
PTPRF-205	ENST00000414879	OR11A1	Q9GZK7	315 aa		10.84	□□□□□ -0.67
PTPRF-205	ENST00000414879	AIP	O00170	330 aa		10.84	□□□□□ -0.67
PTPRF-205	ENST00000414879	LILRB5	O75023	590 aa		10.84	□□□□□ -0.67
PTPRF-205	ENST00000414879	TRAPPC2	P0DI81	140 aa		10.84	□□□□□ -0.67
PTPRF-205	ENST00000414879	TRAPPC2B	P0DI82	140 aa		10.84	□□□□□ -0.67
PTPRF-205	ENST00000414879	CAMK2B	Q13554	666 aa		10.84	□□□□□ -0.67
PTPRF-205	ENST00000414879	ELFN2	Q5R3F8	820 aa		10.84	□□□□□ -0.67
PTPRF-205	ENST00000414879	AKR1C8P	Q5T2L2	129 aa		10.84	□□□□□ -0.67
PTPRF-205	ENST00000414879	USP51	Q70EK9	711 aa		10.84	□□□□□ -0.67
PTPRF-205	ENST00000414879	FBXO8	Q9NRD0	319 aa		10.84	□□□□□ -0.67
PTPRF-205	ENST00000414879	SIRT3	Q9NTG7	399 aa	Predicted RBP	10.84	□□□□□ -0.67
PTPRF-205	ENST00000414879	NECAP2	Q9NVZ3	263 aa		10.84	□□□□□ -0.67
PTPRF-205	ENST00000414879	NUP50	Q9UKX7	468 aa		10.84	□□□□□ -0.67
PTPRF-205	ENST00000414879	TRAPPC4	Q9Y296	219 aa		10.84	□□□□□ -0.67
PTPRF-205	ENST00000414879	SCAF4	O95104	1147 aa	Known RBP	10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	GLA	P06280	429 aa		10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	CNR1	P21554	472 aa		10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	BCKDHB	P21953	392 aa		10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	TMEM211	Q6ICI0	200 aa		10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	GLIPR1L1	Q6UWM5	242 aa		10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	ZNF775	Q96BV0	537 aa	Predicted RBP	10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	TSSK2	Q96PF2	358 aa		10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	DEFB127	Q9H1M4	99 aa		10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	CLEC2D	Q9UHP7	191 aa		10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	FOXJ3	Q9UPW0	622 aa		10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879		A0A1W2PNR3	127 aa		10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	CD1E	P15812	388 aa		10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	ZNF718	Q3SXZ3	478 aa		10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	ZNF766	Q5HY98	468 aa		10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	TIGD3	Q6B0B8	471 aa		10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	STEAP1B	Q6NZ63	245 aa		10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	DHRS13	Q6UX07	377 aa		10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	ANGPTL5	Q86XS5	388 aa		10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	TMEM99	Q8N816	258 aa		10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	SF3B5	Q9BWJ5	86 aa	Known RBP	10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	NTN4	Q9HB63	628 aa		10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	TAS2R3	Q9NYW6	316 aa		10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	NTNG1	Q9Y2I2	539 aa		10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	ZNF638	Q14966	1978 aa	Known RBP	10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	CASP8AP2	Q9UKL3	1982 aa		10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879		A0A0D9SG52	128 aa		10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	PMS2P2	O95744	297 aa		10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	CBX7	O95931	251 aa		10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	ANKRD34C	P0C6C1	535 aa		10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	ZNF806	P0C7X5	589 aa		10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	SMIM18	P0DKX4	95 aa		10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	HLA-DMA	P28067	261 aa		10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	ZNF117	Q03924	483 aa		10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	RFPL4B	Q6ZWI9	263 aa		10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	ARHGEF39	Q8N4T4	335 aa		10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	CHRNA10	Q9GZZ6	450 aa		10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	ACOXL	Q9NUZ1	547 aa		10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	SLC5A6	Q9Y289	635 aa		10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	OTOL1	A6NHN0	477 aa	Predicted RBP	10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879		I3L521	148 aa		10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	OR8U9	P0C7N5	309 aa		10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	TPT1	P13693	172 aa	Known RBP	10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	GABRA2	P47869	451 aa		10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	HEPHL1	Q6MZM0	1159 aa		10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	TMEM81	Q6P7N7	255 aa		10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	GTPBP8	Q8N3Z3	284 aa	Predicted RBP	10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	LSMEM1	Q8N8F7	131 aa		10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	DNASE2B	Q8WZ79	361 aa		10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	APOBEC3D	Q96AK3	386 aa	Predicted RBP	10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	SNX18	Q96RF0	628 aa		10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	PCDHGA3	Q9Y5H0	932 aa		10.83	□□□□□ -0.68
PTPRF-205	ENST00000414879	TRBV5-3	A0A0A0MS03	114 aa		10.82	□□□□□ -0.68
PTPRF-205	ENST00000414879	KRBA1	A5PL33	1030 aa		10.82	□□□□□ -0.68
PTPRF-205	ENST00000414879	MPPED1	O15442	326 aa		10.82	□□□□□ -0.68
PTPRF-205	ENST00000414879	THBS4	P35443	961 aa		10.82	□□□□□ -0.68

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