RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 LSM3P62310 102 aaKnown RBP5.85□□□□□ -1.47
VPS41-204ENST00000413141 SIRPAP78324 504 aa5.85□□□□□ -1.47
VPS41-204ENST00000413141 MFGE8Q08431 387 aaPredicted RBP5.85□□□□□ -1.47
VPS41-204ENST00000413141 KLRB1Q12918 225 aa5.85□□□□□ -1.47
VPS41-204ENST00000413141 NFATC3Q12968 1075 aa5.85□□□□□ -1.47
VPS41-204ENST00000413141 GPR50Q13585 617 aa5.85□□□□□ -1.47
VPS41-204ENST00000413141 SPCS2Q15005 226 aa5.85□□□□□ -1.47
VPS41-204ENST00000413141 SF3B4Q15427 424 aaKnown RBP eCLIP5.85□□□□□ -1.477e-7■■■■■ 29.7
VPS41-204ENST00000413141 SGCAQ16586 387 aa5.85□□□□□ -1.47
VPS41-204ENST00000413141 NRN1LQ496H8 165 aa5.85□□□□□ -1.47
VPS41-204ENST00000413141 SOWAHCQ53LP3 525 aaPredicted RBP5.85□□□□□ -1.47
VPS41-204ENST00000413141 C1orf185Q5T7R7 199 aa5.85□□□□□ -1.47
VPS41-204ENST00000413141 FAM27BQ5VT28 67 aa5.85□□□□□ -1.47
VPS41-204ENST00000413141 LIPNQ5VXI9 398 aa5.85□□□□□ -1.47
VPS41-204ENST00000413141 DMRTA1Q5VZB9 504 aa5.85□□□□□ -1.47
VPS41-204ENST00000413141 DMKNQ6E0U4 476 aaPredicted RBP5.85□□□□□ -1.47
VPS41-204ENST00000413141 RTL6Q6ICC9 239 aa5.85□□□□□ -1.47
VPS41-204ENST00000413141 OR2A2Q6IF42 318 aa5.85□□□□□ -1.47
VPS41-204ENST00000413141 RPL22L1Q6P5R6 122 aaKnown RBP5.85□□□□□ -1.47
VPS41-204ENST00000413141 KCTD18Q6PI47 426 aaPredicted RBP5.85□□□□□ -1.47
VPS41-204ENST00000413141 CD200R1LQ6Q8B3 271 aa5.85□□□□□ -1.47
VPS41-204ENST00000413141 DEGS2Q6QHC5 323 aa5.85□□□□□ -1.47
VPS41-204ENST00000413141 ARL9Q6T311 187 aa5.85□□□□□ -1.47
VPS41-204ENST00000413141 SEM1Q6ZVN7 128 aa5.85□□□□□ -1.47
VPS41-204ENST00000413141 SPATC1Q76KD6 591 aa5.85□□□□□ -1.47
VPS41-204ENST00000413141 FAM214BQ7L5A3 538 aa5.85□□□□□ -1.47
VPS41-204ENST00000413141 KRT77Q7Z794 578 aa5.85□□□□□ -1.47
VPS41-204ENST00000413141 ZNF100Q8IYN0 542 aa5.85□□□□□ -1.47
VPS41-204ENST00000413141 GCNT2Q8N0V5 402 aa5.85□□□□□ -1.47
VPS41-204ENST00000413141 TEX19Q8NA77 164 aa5.85□□□□□ -1.47
VPS41-204ENST00000413141 OR2AJ1Q8NGZ0 328 aa5.85□□□□□ -1.47
VPS41-204ENST00000413141 MBD3L2Q8NHZ7 208 aaPredicted RBP5.85□□□□□ -1.47
VPS41-204ENST00000413141 NDNFQ8TB73 568 aa5.85□□□□□ -1.47
VPS41-204ENST00000413141 FAM57AQ8TBR7 257 aa5.85□□□□□ -1.47
VPS41-204ENST00000413141 TMEM203Q969S6 136 aa5.85□□□□□ -1.47
VPS41-204ENST00000413141 SNRNP40Q96DI7 357 aaKnown RBP5.85□□□□□ -1.47
VPS41-204ENST00000413141 SLAMF6Q96DU3 332 aa5.85□□□□□ -1.47
VPS41-204ENST00000413141 DCLRE1CQ96SD1 692 aaKnown RBP5.85□□□□□ -1.47
VPS41-204ENST00000413141 TM9SF2Q99805 663 aa5.85□□□□□ -1.47
VPS41-204ENST00000413141 FOXB1Q99853 325 aa5.85□□□□□ -1.47
VPS41-204ENST00000413141 CENPOQ9BU64 300 aa5.85□□□□□ -1.47
VPS41-204ENST00000413141 TMED9Q9BVK6 235 aa5.85□□□□□ -1.47
VPS41-204ENST00000413141 CDADC1Q9BWV3 514 aa5.85□□□□□ -1.47
VPS41-204ENST00000413141 MROQ9BYG7 248 aa5.85□□□□□ -1.47
VPS41-204ENST00000413141 SLC25A18Q9H1K4 315 aa5.85□□□□□ -1.47
VPS41-204ENST00000413141 C1orf198Q9H425 327 aa5.85□□□□□ -1.47
VPS41-204ENST00000413141 C12orf49Q9H741 205 aa5.85□□□□□ -1.47
VPS41-204ENST00000413141 SIAEQ9HAT2 523 aa5.85□□□□□ -1.47
VPS41-204ENST00000413141 ELOVL3Q9HB03 270 aa5.85□□□□□ -1.47
VPS41-204ENST00000413141 SLC24A3Q9HC58 644 aa5.85□□□□□ -1.47
VPS41-204ENST00000413141 PNRC2Q9NPJ4 139 aaKnown RBP5.85□□□□□ -1.47
VPS41-204ENST00000413141 PTTG2Q9NZH5 202 aa5.85□□□□□ -1.47
VPS41-204ENST00000413141 MALT1Q9UDY8 824 aa5.85□□□□□ -1.47
VPS41-204ENST00000413141 PRSS50Q9UI38 385 aa5.85□□□□□ -1.47
VPS41-204ENST00000413141 EMC9Q9Y3B6 208 aa5.85□□□□□ -1.47
VPS41-204ENST00000413141 FAM215AQ9Y5M1 114 aa5.85□□□□□ -1.47
VPS41-204ENST00000413141 ATMQ13315 3056 aa5.85□□□□□ -1.47
VPS41-204ENST00000413141 BOD1L1Q8NFC6 3051 aa5.85□□□□□ -1.47
VPS41-204ENST00000413141 DNAJC13O75165 2243 aa5.84□□□□□ -1.47
VPS41-204ENST00000413141 TRBV2A0A0J9YWF9 115 aa5.84□□□□□ -1.47
VPS41-204ENST00000413141 TRDV1A0A1B0GX56 115 aa5.84□□□□□ -1.47
VPS41-204ENST00000413141 GABRPO00591 440 aa5.84□□□□□ -1.47
VPS41-204ENST00000413141 RER1O15258 196 aa5.84□□□□□ -1.47
VPS41-204ENST00000413141 ZNF254O75437 659 aa5.84□□□□□ -1.47
VPS41-204ENST00000413141 SRSF10O75494 262 aaKnown RBP5.84□□□□□ -1.47
VPS41-204ENST00000413141 RGS9O75916 674 aaPredicted RBP5.84□□□□□ -1.47
VPS41-204ENST00000413141 CST2P09228 141 aa5.84□□□□□ -1.47
VPS41-204ENST00000413141 H2BFMP0C1H6 154 aa5.84□□□□□ -1.47
VPS41-204ENST00000413141 ABOP16442 354 aa5.84□□□□□ -1.47
VPS41-204ENST00000413141 GALP22466 123 aa5.84□□□□□ -1.47
VPS41-204ENST00000413141 RIDAP52758 137 aaKnown RBP5.84□□□□□ -1.47
VPS41-204ENST00000413141 HIST1H3AP68431 136 aa5.84□□□□□ -1.47
VPS41-204ENST00000413141 FABP5Q01469 135 aa5.84□□□□□ -1.47
VPS41-204ENST00000413141 SLC3A1Q07837 685 aa5.84□□□□□ -1.47
VPS41-204ENST00000413141 TRAM1Q15629 374 aa5.84□□□□□ -1.47
VPS41-204ENST00000413141 WDR38Q5JTN6 314 aa5.84□□□□□ -1.47
VPS41-204ENST00000413141 HIST2H3PS2Q5TEC6 136 aa5.84□□□□□ -1.47
VPS41-204ENST00000413141 FBXW9Q5XUX1 488 aa5.84□□□□□ -1.47
VPS41-204ENST00000413141 FDX2Q6P4F2 183 aa5.84□□□□□ -1.47
VPS41-204ENST00000413141 KLHL24Q6TFL4 600 aa5.84□□□□□ -1.47
VPS41-204ENST00000413141 TFAP2EQ6VUC0 442 aa5.84□□□□□ -1.47
VPS41-204ENST00000413141 GDPGP1Q6ZNW5 385 aa5.84□□□□□ -1.47
VPS41-204ENST00000413141 USP43Q70EL4 1123 aa5.84□□□□□ -1.47
VPS41-204ENST00000413141 HIST2H3AQ71DI3 136 aa5.84□□□□□ -1.47
VPS41-204ENST00000413141 RHOUQ7L0Q8 258 aa5.84□□□□□ -1.47
VPS41-204ENST00000413141 ZNF627Q7L945 461 aa5.84□□□□□ -1.47
VPS41-204ENST00000413141 ABHD12BQ7Z5M8 362 aaPredicted RBP5.84□□□□□ -1.47
VPS41-204ENST00000413141 ALDH16A1Q8IZ83 802 aa5.84□□□□□ -1.47
VPS41-204ENST00000413141 UBE2J2Q8N2K1 259 aa5.84□□□□□ -1.47
VPS41-204ENST00000413141 LRRC18Q8N456 261 aa5.84□□□□□ -1.47
VPS41-204ENST00000413141 SLC22A24Q8N4F4 322 aa5.84□□□□□ -1.47
VPS41-204ENST00000413141 CNEP1R1Q8N9A8 125 aa5.84□□□□□ -1.47
VPS41-204ENST00000413141 KBTBD8Q8NFY9 601 aa5.84□□□□□ -1.47
VPS41-204ENST00000413141 OR6K3Q8NGY3 331 aa5.84□□□□□ -1.47
VPS41-204ENST00000413141 RGP1Q92546 391 aaPredicted RBP5.84□□□□□ -1.47
VPS41-204ENST00000413141 FBXO17Q96EF6 278 aa5.84□□□□□ -1.47
VPS41-204ENST00000413141 C4orf45Q96LM5 186 aa5.84□□□□□ -1.47
VPS41-204ENST00000413141 COQ7Q99807 217 aa5.84□□□□□ -1.47
VPS41-204ENST00000413141 SH3GL3Q99963 347 aa5.84□□□□□ -1.47
VPS41-204ENST00000413141 DCUN1D5Q9BTE7 237 aa5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms