RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 SLC25A19Q9HC21 320 aa11.86□□□□□ -0.51
COL6A3-206ENST00000409809 TMEM184BQ9Y519 407 aaPredicted RBP11.86□□□□□ -0.51
COL6A3-206ENST00000409809 POM121BA6NF01 834 aa11.86□□□□□ -0.51
COL6A3-206ENST00000409809 SSSCA1O60232 199 aa11.86□□□□□ -0.51
COL6A3-206ENST00000409809 RPUSD4Q96CM3 377 aaKnown RBP11.86□□□□□ -0.51
COL6A3-206ENST00000409809 PCDHGA9Q9Y5G4 932 aaKnown RBP11.86□□□□□ -0.51
COL6A3-206ENST00000409809 SCN5AQ14524 2016 aa11.86□□□□□ -0.51
COL6A3-206ENST00000409809 SOD1P00441 154 aa11.86□□□□□ -0.51
COL6A3-206ENST00000409809 IGFBP4P22692 258 aa11.86□□□□□ -0.51
COL6A3-206ENST00000409809 TMEM229BQ8NBD8 167 aa11.86□□□□□ -0.51
COL6A3-206ENST00000409809 OR52I2Q8NH67 350 aa11.86□□□□□ -0.51
COL6A3-206ENST00000409809 TP53RKQ96S44 253 aa11.86□□□□□ -0.51
COL6A3-206ENST00000409809 FLVCR1Q9Y5Y0 555 aa11.86□□□□□ -0.51
COL6A3-206ENST00000409809 RRP8O43159 456 aaKnown RBP11.86□□□□□ -0.51
COL6A3-206ENST00000409809 HMGN2P05204 90 aaKnown RBP11.86□□□□□ -0.51
COL6A3-206ENST00000409809 TMEM241Q24JQ0 296 aa11.86□□□□□ -0.51
COL6A3-206ENST00000409809 ZNF626Q68DY1 528 aa11.86□□□□□ -0.51
COL6A3-206ENST00000409809 OR2W3Q7Z3T1 314 aa11.86□□□□□ -0.51
COL6A3-206ENST00000409809 PLXDC1Q8IUK5 500 aa11.86□□□□□ -0.51
COL6A3-206ENST00000409809 FAM103A1Q9BTL3 118 aaKnown RBP11.86□□□□□ -0.51
COL6A3-206ENST00000409809 MARCH4Q9P2E8 410 aaPredicted RBP11.86□□□□□ -0.51
COL6A3-206ENST00000409809 DMRT1Q9Y5R6 373 aa11.86□□□□□ -0.51
COL6A3-206ENST00000409809 CTSAP10619 480 aa11.86□□□□□ -0.51
COL6A3-206ENST00000409809 EIF1P41567 113 aaKnown RBP11.86□□□□□ -0.51
COL6A3-206ENST00000409809 FAM209BQ5JX69 171 aa11.86□□□□□ -0.51
COL6A3-206ENST00000409809 IL22RA1Q8N6P7 574 aa11.86□□□□□ -0.51
COL6A3-206ENST00000409809 OR52R1Q8NGF1 315 aa11.86□□□□□ -0.51
COL6A3-206ENST00000409809 SLIRPQ9GZT3 109 aaKnown RBP11.86□□□□□ -0.51
COL6A3-206ENST00000409809 SPANXA1Q9NS26 97 aa11.86□□□□□ -0.51
COL6A3-206ENST00000409809 LHX3Q9UBR4 397 aa11.86□□□□□ -0.51
COL6A3-206ENST00000409809 SIGLEC1Q9BZZ2 1709 aa11.86□□□□□ -0.51
COL6A3-206ENST00000409809 MTX2O75431 263 aa11.86□□□□□ -0.51
COL6A3-206ENST00000409809 CPMP14384 443 aa11.86□□□□□ -0.51
COL6A3-206ENST00000409809 HIST1H1TP22492 207 aaPredicted RBP11.86□□□□□ -0.51
COL6A3-206ENST00000409809 SHC1P29353 583 aa11.86□□□□□ -0.51
COL6A3-206ENST00000409809 ADPRHP54922 357 aa11.86□□□□□ -0.51
COL6A3-206ENST00000409809 FOXK2Q01167 660 aa11.86□□□□□ -0.51
COL6A3-206ENST00000409809 NSDHLQ15738 373 aa11.86□□□□□ -0.51
COL6A3-206ENST00000409809 PRRT3Q5FWE3 981 aa11.86□□□□□ -0.51
COL6A3-206ENST00000409809 APCDD1Q8J025 514 aa11.86□□□□□ -0.51
COL6A3-206ENST00000409809 MTCH1Q9NZJ7 389 aa11.86□□□□□ -0.51
COL6A3-206ENST00000409809 CCL16O15467 120 aa11.85□□□□□ -0.51
COL6A3-206ENST00000409809 OR7C1O76099 320 aaPredicted RBP11.85□□□□□ -0.51
COL6A3-206ENST00000409809 TAL1P17542 331 aaPredicted RBP11.85□□□□□ -0.51
COL6A3-206ENST00000409809 CSNK1G2P78368 415 aa11.85□□□□□ -0.51
COL6A3-206ENST00000409809 TAZQ16635 292 aa11.85□□□□□ -0.51
COL6A3-206ENST00000409809 FCRLBQ6BAA4 426 aa11.85□□□□□ -0.51
COL6A3-206ENST00000409809 DOK3Q7L591 496 aa11.85□□□□□ -0.51
COL6A3-206ENST00000409809 PRR22Q8IZ63 422 aa11.85□□□□□ -0.51
COL6A3-206ENST00000409809 KLRG1Q96E93 195 aa11.85□□□□□ -0.51
COL6A3-206ENST00000409809 ARHGAP9Q9BRR9 750 aa11.85□□□□□ -0.51
COL6A3-206ENST00000409809 OCEL1Q9H607 264 aa11.85□□□□□ -0.51
COL6A3-206ENST00000409809 SOWAHCQ53LP3 525 aaPredicted RBP11.85□□□□□ -0.51
COL6A3-206ENST00000409809 OR10A7Q8NGE5 316 aa11.85□□□□□ -0.51
COL6A3-206ENST00000409809 OR14A16Q8NHC5 309 aa11.85□□□□□ -0.51
COL6A3-206ENST00000409809 SLCO4A1Q96BD0 722 aa11.85□□□□□ -0.51
COL6A3-206ENST00000409809 ADGRG7Q96K78 797 aa11.85□□□□□ -0.51
COL6A3-206ENST00000409809 TMED3Q9Y3Q3 217 aa11.85□□□□□ -0.51
COL6A3-206ENST00000409809 NSG1A0A0A6YYJ2 146 aa11.85□□□□□ -0.51
COL6A3-206ENST00000409809 PMP2P02689 132 aa11.85□□□□□ -0.51
COL6A3-206ENST00000409809 NAT2P11245 290 aa11.85□□□□□ -0.51
COL6A3-206ENST00000409809 ITGB7P26010 798 aa11.85□□□□□ -0.51
COL6A3-206ENST00000409809 GABRA4P48169 554 aa11.85□□□□□ -0.51
COL6A3-206ENST00000409809 WDR74Q6RFH5 385 aaPredicted RBP11.85□□□□□ -0.51
COL6A3-206ENST00000409809 MAML2Q8IZL2 1156 aaPredicted RBP11.85□□□□□ -0.51
COL6A3-206ENST00000409809 STRADBQ9C0K7 418 aa11.85□□□□□ -0.51
COL6A3-206ENST00000409809 ZAR1LA6NP61 321 aa11.85□□□□□ -0.51
COL6A3-206ENST00000409809 OR1D4P47884 311 aa11.85□□□□□ -0.51
COL6A3-206ENST00000409809 RAB6CQ53S08 254 aa11.85□□□□□ -0.51
COL6A3-206ENST00000409809 TMPRSS9Q7Z410 1059 aa11.85□□□□□ -0.51
COL6A3-206ENST00000409809 OR10P1Q8NGE3 313 aa11.85□□□□□ -0.51
COL6A3-206ENST00000409809 GMPPAQ96IJ6 420 aaPredicted RBP11.85□□□□□ -0.51
COL6A3-206ENST00000409809 RSG1Q9BU20 258 aa11.85□□□□□ -0.51
COL6A3-206ENST00000409809 VN1R3Q9BXE9 311 aa11.85□□□□□ -0.51
COL6A3-206ENST00000409809 PRICKLE3O43900 615 aaPredicted RBP11.85□□□□□ -0.51
COL6A3-206ENST00000409809 NRASP01111 189 aa11.85□□□□□ -0.51
COL6A3-206ENST00000409809 HRASP01112 189 aa11.85□□□□□ -0.51
COL6A3-206ENST00000409809 KRASP01116 189 aa11.85□□□□□ -0.51
COL6A3-206ENST00000409809 EIF4EP06730 217 aaKnown RBP11.85□□□□□ -0.51
COL6A3-206ENST00000409809 FBXO45P0C2W1 286 aa11.85□□□□□ -0.51
COL6A3-206ENST00000409809 TNFRSF1BP20333 461 aa11.85□□□□□ -0.51
COL6A3-206ENST00000409809 ZFP62Q8NB50 900 aaPredicted RBP11.85□□□□□ -0.51
COL6A3-206ENST00000409809 OR2M7Q8NG81 312 aa11.85□□□□□ -0.51
COL6A3-206ENST00000409809 ARRDC2Q8TBH0 407 aa11.85□□□□□ -0.51
COL6A3-206ENST00000409809 COPS9Q8WXC6 57 aa11.85□□□□□ -0.51
COL6A3-206ENST00000409809 FOXJ1Q92949 421 aa11.85□□□□□ -0.51
COL6A3-206ENST00000409809 FBXW5Q969U6 566 aa11.85□□□□□ -0.51
COL6A3-206ENST00000409809 IKZF4Q9H2S9 585 aa11.85□□□□□ -0.51
COL6A3-206ENST00000409809 LPAR3Q9UBY5 353 aa11.85□□□□□ -0.51
COL6A3-206ENST00000409809 SRPK3Q9UPE1 567 aa11.85□□□□□ -0.51
COL6A3-206ENST00000409809 ZNF541Q9H0D2 1346 aa11.85□□□□□ -0.51
COL6A3-206ENST00000409809 MBTPS2O43462 519 aa11.85□□□□□ -0.51
COL6A3-206ENST00000409809 WASP42768 502 aa11.85□□□□□ -0.51
COL6A3-206ENST00000409809 PPOXP50336 477 aa11.85□□□□□ -0.51
COL6A3-206ENST00000409809 SLC38A9Q8NBW4 561 aa11.85□□□□□ -0.51
COL6A3-206ENST00000409809 OR4B1Q8NGF8 309 aa11.85□□□□□ -0.51
COL6A3-206ENST00000409809 C11orf84Q9BUA3 381 aaPredicted RBP11.85□□□□□ -0.51
COL6A3-206ENST00000409809 MAP1LC3CQ9BXW4 147 aa11.85□□□□□ -0.51
COL6A3-206ENST00000409809 NDUFB6O95139 128 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 HAND1O96004 215 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms