RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 ENTPD1P49961 510 aa13.86□□□□□ -0.19
HMGA1-204ENST00000401473 NUDT6P53370 316 aa13.86□□□□□ -0.19
HMGA1-204ENST00000401473 HIST1H3AP68431 136 aa13.86□□□□□ -0.19
HMGA1-204ENST00000401473 CDK5R2Q13319 367 aa13.86□□□□□ -0.19
HMGA1-204ENST00000401473 AQP6Q13520 282 aa13.86□□□□□ -0.19
HMGA1-204ENST00000401473 GGTLC2Q14390 218 aa13.86□□□□□ -0.19
HMGA1-204ENST00000401473 RAB39AQ14964 217 aa13.86□□□□□ -0.19
HMGA1-204ENST00000401473 PABPC1L2AQ5JQF8 200 aa13.86□□□□□ -0.19
HMGA1-204ENST00000401473 TEX30Q5JUR7 227 aa13.86□□□□□ -0.19
HMGA1-204ENST00000401473 HIST2H3PS2Q5TEC6 136 aa13.86□□□□□ -0.19
HMGA1-204ENST00000401473 MEDAGQ5VYS4 303 aa13.86□□□□□ -0.19
HMGA1-204ENST00000401473 ZNF787Q6DD87 383 aa13.86□□□□□ -0.19
HMGA1-204ENST00000401473 SLC18B1Q6NT16 456 aa13.86□□□□□ -0.19
HMGA1-204ENST00000401473 CFAP77Q6ZQR2 320 aa13.86□□□□□ -0.19
HMGA1-204ENST00000401473 HIST2H3AQ71DI3 136 aa13.86□□□□□ -0.19
HMGA1-204ENST00000401473 C8orf59Q8N0T1 100 aaPredicted RBP13.86□□□□□ -0.19
HMGA1-204ENST00000401473 OR10H5Q8NGA6 315 aa13.86□□□□□ -0.19
HMGA1-204ENST00000401473 MAP6Q96JE9 813 aa13.86□□□□□ -0.19
HMGA1-204ENST00000401473 INTS14Q96SY0 518 aa13.86□□□□□ -0.19
HMGA1-204ENST00000401473 OR2H1Q9GZK4 316 aa13.86□□□□□ -0.19
HMGA1-204ENST00000401473 WNT5BQ9H1J7 359 aa13.86□□□□□ -0.19
HMGA1-204ENST00000401473 KCNN2Q9H2S1 579 aa13.86□□□□□ -0.19
HMGA1-204ENST00000401473 CACNA1DQ01668 2161 aa13.85□□□□□ -0.19
HMGA1-204ENST00000401473 IGHV1-18A0A0C4DH31 117 aa13.85□□□□□ -0.19
HMGA1-204ENST00000401473 DEFB108AA8MXU0 73 aa13.85□□□□□ -0.19
HMGA1-204ENST00000401473 SERPINA5P05154 406 aa13.85□□□□□ -0.19
HMGA1-204ENST00000401473 ARR3P36575 388 aa13.85□□□□□ -0.19
HMGA1-204ENST00000401473 IDH3GP51553 393 aaPredicted RBP13.85□□□□□ -0.19
HMGA1-204ENST00000401473 CCDC92Q53HC0 331 aaPredicted RBP13.85□□□□□ -0.19
HMGA1-204ENST00000401473 ZNF774Q6NX45 483 aa13.85□□□□□ -0.19
HMGA1-204ENST00000401473 THAP5Q7Z6K1 395 aa13.85□□□□□ -0.19
HMGA1-204ENST00000401473 FAM169BQ8N8A8 192 aa13.85□□□□□ -0.19
HMGA1-204ENST00000401473 SETD9Q8NE22 299 aa13.85□□□□□ -0.19
HMGA1-204ENST00000401473 OR6N2Q8NGY6 317 aa13.85□□□□□ -0.19
HMGA1-204ENST00000401473 FAM222BQ8WU58 562 aa13.85□□□□□ -0.19
HMGA1-204ENST00000401473 NANOS1Q8WY41 292 aaKnown RBP13.85□□□□□ -0.19
HMGA1-204ENST00000401473 RFKQ969G6 155 aa13.85□□□□□ -0.19
HMGA1-204ENST00000401473 ANKRD60Q9BZ19 345 aa13.85□□□□□ -0.19
HMGA1-204ENST00000401473 ADGRL4Q9HBW9 690 aa13.85□□□□□ -0.19
HMGA1-204ENST00000401473 CCNB1IP1Q9NPC3 277 aa13.85□□□□□ -0.19
HMGA1-204ENST00000401473 CLN6Q9NWW5 311 aa13.85□□□□□ -0.19
HMGA1-204ENST00000401473 WARS2Q9UGM6 360 aaKnown RBP13.85□□□□□ -0.19
HMGA1-204ENST00000401473 KCNG2Q9UJ96 466 aa13.85□□□□□ -0.19
HMGA1-204ENST00000401473 GDF2Q9UK05 429 aaPredicted RBP13.85□□□□□ -0.19
HMGA1-204ENST00000401473 HSPE1-MOB4S4R3N1 261 aa13.85□□□□□ -0.19
HMGA1-204ENST00000401473 NOTCH2Q04721 2471 aa13.85□□□□□ -0.19
HMGA1-204ENST00000401473 POLQO75417 2590 aa13.85□□□□□ -0.19
HMGA1-204ENST00000401473 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.84□□□□□ -0.19
HMGA1-204ENST00000401473 M0R1B8 84 aa13.84□□□□□ -0.19
HMGA1-204ENST00000401473 CASKO14936 926 aa13.84□□□□□ -0.19
HMGA1-204ENST00000401473 SPARCP09486 303 aa13.84□□□□□ -0.19
HMGA1-204ENST00000401473 CECR9P0C854 216 aa13.84□□□□□ -0.19
HMGA1-204ENST00000401473 CCL2P13500 99 aa13.84□□□□□ -0.19
HMGA1-204ENST00000401473 HSPA13P48723 471 aa13.84□□□□□ -0.19
HMGA1-204ENST00000401473 PCBD1P61457 104 aa13.84□□□□□ -0.19
HMGA1-204ENST00000401473 RSPO1Q2MKA7 263 aaPredicted RBP13.84□□□□□ -0.19
HMGA1-204ENST00000401473 C1QTNF12Q5T7M4 302 aa13.84□□□□□ -0.19
HMGA1-204ENST00000401473 TMEM154Q6P9G4 183 aa13.84□□□□□ -0.19
HMGA1-204ENST00000401473 DCXRQ7Z4W1 244 aa13.84□□□□□ -0.19
HMGA1-204ENST00000401473 ZNF295-AS1Q8N0V1 137 aa13.84□□□□□ -0.19
HMGA1-204ENST00000401473 GJC3Q8NFK1 279 aa13.84□□□□□ -0.19
HMGA1-204ENST00000401473 OR51G2Q8NGK0 314 aa13.84□□□□□ -0.19
HMGA1-204ENST00000401473 OR10S1Q8NGN2 331 aa13.84□□□□□ -0.19
HMGA1-204ENST00000401473 AMELYQ99218 206 aa13.84□□□□□ -0.19
HMGA1-204ENST00000401473 PNRC2Q9NPJ4 139 aaKnown RBP13.84□□□□□ -0.19
HMGA1-204ENST00000401473 RAB26Q9ULW5 256 aa13.84□□□□□ -0.19
HMGA1-204ENST00000401473 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.84□□□□□ -0.19
HMGA1-204ENST00000401473 POLR1DQ9Y2S0 133 aa13.84□□□□□ -0.19
HMGA1-204ENST00000401473 MAP1AP78559 2803 aaPredicted RBP13.84□□□□□ -0.19
HMGA1-204ENST00000401473 SBK2P0C263 348 aa13.84□□□□□ -0.19
HMGA1-204ENST00000401473 COX6B1P14854 86 aa13.84□□□□□ -0.19
HMGA1-204ENST00000401473 MYF6P23409 242 aa13.84□□□□□ -0.19
HMGA1-204ENST00000401473 APEX1P27695 318 aaKnown RBP13.84□□□□□ -0.19
HMGA1-204ENST00000401473 LOXP28300 417 aaPredicted RBP13.84□□□□□ -0.19
HMGA1-204ENST00000401473 MTNR1AP48039 350 aa13.84□□□□□ -0.19
HMGA1-204ENST00000401473 VASH1Q7L8A9 365 aaPredicted RBP13.84□□□□□ -0.19
HMGA1-204ENST00000401473 SHFQ7M4L6 423 aa13.84□□□□□ -0.19
HMGA1-204ENST00000401473 SSX8Q7RTT4 187 aa13.84□□□□□ -0.19
HMGA1-204ENST00000401473 DPPA2Q7Z7J5 298 aa13.84□□□□□ -0.19
HMGA1-204ENST00000401473 OR4F15Q8NGB8 312 aa13.84□□□□□ -0.19
HMGA1-204ENST00000401473 OTOSQ8NHW6 89 aa13.84□□□□□ -0.19
HMGA1-204ENST00000401473 ST7LQ8TDW4 575 aa13.84□□□□□ -0.19
HMGA1-204ENST00000401473 PLPPR2Q96GM1 343 aa13.84□□□□□ -0.19
HMGA1-204ENST00000401473 Q96MT0 163 aa13.84□□□□□ -0.19
HMGA1-204ENST00000401473 HS3ST6Q96QI5 342 aa13.84□□□□□ -0.19
HMGA1-204ENST00000401473 WACQ9BTA9 647 aa13.84□□□□□ -0.19
HMGA1-204ENST00000401473 PLEK2Q9NYT0 353 aa13.84□□□□□ -0.19
HMGA1-204ENST00000401473 KLHDC2Q9Y2U9 406 aa13.84□□□□□ -0.19
HMGA1-204ENST00000401473 LOC100509620A0A075B734 347 aa13.83□□□□□ -0.2
HMGA1-204ENST00000401473 SGCEO43556 437 aa13.83□□□□□ -0.2
HMGA1-204ENST00000401473 SYNGR3O43761 229 aa13.83□□□□□ -0.2
HMGA1-204ENST00000401473 RAB36O95755 333 aa13.83□□□□□ -0.2
HMGA1-204ENST00000401473 DBTP11182 482 aaKnown RBP13.83□□□□□ -0.2
HMGA1-204ENST00000401473 ALOX5APP20292 161 aa13.83□□□□□ -0.2
HMGA1-204ENST00000401473 CD40P25942 277 aa13.83□□□□□ -0.2
HMGA1-204ENST00000401473 BSPH1Q075Z2 132 aa13.83□□□□□ -0.2
HMGA1-204ENST00000401473 DAZAP2Q15038 168 aaPredicted RBP13.83□□□□□ -0.2
HMGA1-204ENST00000401473 TMEM53Q6P2H8 277 aa13.83□□□□□ -0.2
HMGA1-204ENST00000401473 SLC16A9Q7RTY1 509 aa13.83□□□□□ -0.2
HMGA1-204ENST00000401473 CDC20BQ86Y33 519 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms