RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 ACTA1P68133 377 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 ZNF85Q03923 595 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 HGFACQ04756 655 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 MST1LQ2TV78 715 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 ELFN2Q5R3F8 820 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 KLHL24Q6TFL4 600 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 ZNF813Q6ZN06 617 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 MYPOPQ86VE0 399 aaPredicted RBP6.07□□□□□ -1.44
LIMA1-202ENST00000394943 BBS1Q8NFJ9 593 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 OR6N1Q8NGY5 312 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 NGBQ9NPG2 151 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 RPRD1BQ9NQG5 326 aaKnown RBP6.07□□□□□ -1.44
LIMA1-202ENST00000394943 NKIRAS2Q9NYR9 191 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 CGGBP1Q9UFW8 167 aaPredicted RBP6.07□□□□□ -1.44
LIMA1-202ENST00000394943 TMEM14AQ9Y6G1 99 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 INTS1Q8N201 2190 aaKnown RBP6.07□□□□□ -1.44
LIMA1-202ENST00000394943 LOC100509620A0A075B734 347 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 A0A0U1RQV5 110 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 ISG15P05161 165 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 ADRA2AP08913 450 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 CECR9P0C854 216 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 PTNP21246 168 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 MMP16P51512 607 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 TOP3AQ13472 1001 aaPredicted RBP6.06□□□□□ -1.44
LIMA1-202ENST00000394943 UGT2A3Q6UWM9 527 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 ZNF611Q8N823 705 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 ZNF555Q8NEP9 628 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 OR52N5Q8NH56 324 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 LGALS12Q96DT0 336 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 OR8B4Q96RC9 309 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 INTS14Q96SY0 518 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 ZNF184Q99676 751 aaPredicted RBP6.06□□□□□ -1.44
LIMA1-202ENST00000394943 KCNJ15Q99712 375 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 ZNF701Q9NV72 531 aaPredicted RBP6.06□□□□□ -1.44
LIMA1-202ENST00000394943 FAM206AQ9NX38 181 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 PLEKHB1Q9UF11 243 aaPredicted RBP6.06□□□□□ -1.44
LIMA1-202ENST00000394943 GMPPBQ9Y5P6 360 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 ZGRF1Q86YA3 2104 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 TMEM129A0AVI4 362 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 PRR32B1ATL7 298 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 NR4A1P22736 598 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 FMO3P31513 532 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 CCR9P51686 369 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 SLC35A2P78381 396 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 CD47Q08722 323 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 GALEQ14376 348 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 SNAPC1Q16533 368 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 HIKESHIQ53FT3 197 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 CFAP77Q6ZQR2 320 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 THAP5Q7Z6K1 395 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 OR52N1Q8NH53 320 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 OR1F12Q8NHA8 337 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 C10orf35Q96D05 121 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 C1orf159Q96HA4 380 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 SEBOXQ9HB31 216 aaPredicted RBP6.06□□□□□ -1.44
LIMA1-202ENST00000394943 GDF2Q9UK05 429 aaPredicted RBP6.06□□□□□ -1.44
LIMA1-202ENST00000394943 RPL36Q9Y3U8 105 aaKnown RBP6.06□□□□□ -1.44
LIMA1-202ENST00000394943 A0A1W2PPR1 153 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 H3BN98 237 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 ENTPD6O75354 484 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 GPX5O75715 221 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 LYZL6O75951 148 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 FARS2O95363 451 aaKnown RBP6.06□□□□□ -1.44
LIMA1-202ENST00000394943 CLUP10909 449 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 CD53P19397 219 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 IL32P24001 234 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 CFPP27918 469 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 WNT5AP41221 380 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 PPOXP50336 477 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 MRPS11P82912 194 aaKnown RBP6.06□□□□□ -1.44
LIMA1-202ENST00000394943 APOFQ13790 326 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 PLBD1Q6P4A8 553 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 DRAM2Q6UX65 266 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 C20orf204Q6ZNR8 217 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 CNN2Q99439 309 aaKnown RBP6.06□□□□□ -1.44
LIMA1-202ENST00000394943 PLK3Q9H4B4 646 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 RGCCQ9H4X1 137 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 ESRP2Q9H6T0 727 aaKnown RBP6.06□□□□□ -1.44
LIMA1-202ENST00000394943 TVP23BQ9NYZ1 205 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 NBPF19A0A087WUL8 3843 aa6.06□□□□□ -1.44
LIMA1-202ENST00000394943 SNTNA6NMZ2 147 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 FAM90A27PA6NNH2 459 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 ZNF878C9JN71 531 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 H7C417 338 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 SMPD2O60906 423 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 ATE1O95260 518 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 ATP6V1B1P15313 513 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 ZNF32P17041 273 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 GLRXP35754 106 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 ZNF91Q05481 1191 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 CCDC58Q4VC31 144 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 KLHL22Q53GT1 634 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 TMEM255AQ5JRV8 349 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 CLEC12AQ5QGZ9 265 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 ZNF529Q6P280 563 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 LUZP2Q86TE4 346 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 TCEANCQ8N8B7 351 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 RIBC2Q9H4K1 309 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 SP140LQ9H930 580 aa6.05□□□□□ -1.44
LIMA1-202ENST00000394943 TUBAL3A6NHL2 446 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms