RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 PTGS2P35354 604 aa16.17■□□□□ 0.18
CCDC88C-203ENST00000389856 PITPNBP48739 271 aa16.17■□□□□ 0.18
CCDC88C-203ENST00000389856 LHX2P50458 406 aa16.17■□□□□ 0.18
CCDC88C-203ENST00000389856 HCCSP53701 268 aa16.17■□□□□ 0.18
CCDC88C-203ENST00000389856 CLDN15P56746 228 aa16.17■□□□□ 0.18
CCDC88C-203ENST00000389856 KCNJ8Q15842 424 aa16.17■□□□□ 0.18
CCDC88C-203ENST00000389856 ABLIM2Q6H8Q1 611 aa16.17■□□□□ 0.18
CCDC88C-203ENST00000389856 DPY19L4Q7Z388 723 aa16.17■□□□□ 0.18
CCDC88C-203ENST00000389856 NR2C2APQ86WQ0 139 aa16.17■□□□□ 0.18
CCDC88C-203ENST00000389856 THEM6Q8WUY1 208 aa16.17■□□□□ 0.18
CCDC88C-203ENST00000389856 ITFG2Q969R8 447 aa16.17■□□□□ 0.18
CCDC88C-203ENST00000389856 UCN2Q96RP3 112 aa16.17■□□□□ 0.18
CCDC88C-203ENST00000389856 SLC6A15Q9H2J7 730 aa16.17■□□□□ 0.18
CCDC88C-203ENST00000389856 IKZF2Q9UKS7 526 aa16.17■□□□□ 0.18
CCDC88C-203ENST00000389856 COPS3Q9UNS2 423 aa16.17■□□□□ 0.18
CCDC88C-203ENST00000389856 TRGV5A0A0B4J1U4 118 aa16.16■□□□□ 0.18
CCDC88C-203ENST00000389856 IGHV3-15A0A0B4J1V0 119 aa16.16■□□□□ 0.18
CCDC88C-203ENST00000389856 TRBV2A0A0J9YWF9 115 aa16.16■□□□□ 0.18
CCDC88C-203ENST00000389856 TFECO14948 347 aaPredicted RBP16.16■□□□□ 0.18
CCDC88C-203ENST00000389856 RRP8O43159 456 aaKnown RBP16.16■□□□□ 0.18
CCDC88C-203ENST00000389856 EDNRAP25101 427 aa16.16■□□□□ 0.18
CCDC88C-203ENST00000389856 LAP3P28838 519 aa16.16■□□□□ 0.18
CCDC88C-203ENST00000389856 PITPNAQ00169 270 aa16.16■□□□□ 0.18
CCDC88C-203ENST00000389856 P2RY14Q15391 338 aa16.16■□□□□ 0.18
CCDC88C-203ENST00000389856 HIST3H3Q16695 136 aa16.16■□□□□ 0.18
CCDC88C-203ENST00000389856 YIF1BQ5BJH7 314 aa16.16■□□□□ 0.18
CCDC88C-203ENST00000389856 LYPD4Q6UWN0 246 aa16.16■□□□□ 0.18
CCDC88C-203ENST00000389856 IGFL3Q6UXB1 125 aa16.16■□□□□ 0.18
CCDC88C-203ENST00000389856 FCRLAQ7L513 359 aa16.16■□□□□ 0.18
CCDC88C-203ENST00000389856 YIPF7Q8N8F6 280 aa16.16■□□□□ 0.18
CCDC88C-203ENST00000389856 SLC26A10Q8NG04 563 aa16.16■□□□□ 0.18
CCDC88C-203ENST00000389856 SMAP2Q8WU79 429 aaPredicted RBP16.16■□□□□ 0.18
CCDC88C-203ENST00000389856 B3GAT2Q9NPZ5 323 aa16.16■□□□□ 0.18
CCDC88C-203ENST00000389856 EMC3Q9P0I2 261 aa16.16■□□□□ 0.18
CCDC88C-203ENST00000389856 CYTIPO60759 359 aa16.16■□□□□ 0.18
CCDC88C-203ENST00000389856 RAMP1O60894 148 aa16.16■□□□□ 0.18
CCDC88C-203ENST00000389856 ATP6V1G1O75348 118 aa16.16■□□□□ 0.18
CCDC88C-203ENST00000389856 SLC43A1O75387 559 aa16.16■□□□□ 0.18
CCDC88C-203ENST00000389856 ZNF24P17028 368 aa16.16■□□□□ 0.18
CCDC88C-203ENST00000389856 KIR2DL3P43628 341 aa16.16■□□□□ 0.18
CCDC88C-203ENST00000389856 SUCLG1P53597 346 aaKnown RBP16.16■□□□□ 0.18
CCDC88C-203ENST00000389856 CLDN18P56856 261 aa16.16■□□□□ 0.18
CCDC88C-203ENST00000389856 FMODQ06828 376 aa16.16■□□□□ 0.18
CCDC88C-203ENST00000389856 DBPQ10586 325 aaPredicted RBP16.16■□□□□ 0.18
CCDC88C-203ENST00000389856 ZNF684Q5T5D7 378 aa16.16■□□□□ 0.18
CCDC88C-203ENST00000389856 NCCRP1Q6ZVX7 275 aaPredicted RBP16.16■□□□□ 0.18
CCDC88C-203ENST00000389856 SAMD12Q8N8I0 201 aa16.16■□□□□ 0.18
CCDC88C-203ENST00000389856 TRMT10AQ8TBZ6 339 aaKnown RBP16.16■□□□□ 0.18
CCDC88C-203ENST00000389856 THRSPQ92748 146 aa16.16■□□□□ 0.18
CCDC88C-203ENST00000389856 PPIL3Q9H2H8 161 aaKnown RBP16.16■□□□□ 0.18
CCDC88C-203ENST00000389856 ZDHHC11Q9H8X9 412 aa16.16■□□□□ 0.18
CCDC88C-203ENST00000389856 GLTPQ9NZD2 209 aa16.16■□□□□ 0.18
CCDC88C-203ENST00000389856 DKK4Q9UBT3 224 aa16.16■□□□□ 0.18
CCDC88C-203ENST00000389856 ZNF281Q9Y2X9 895 aa16.16■□□□□ 0.18
CCDC88C-203ENST00000389856 FAM240BA0A1B0GVZ2 78 aa16.15■□□□□ 0.18
CCDC88C-203ENST00000389856 ZNF432O94892 652 aa16.15■□□□□ 0.18
CCDC88C-203ENST00000389856 CELA3AP09093 270 aa16.15■□□□□ 0.18
CCDC88C-203ENST00000389856 ZNF84P51523 738 aa16.15■□□□□ 0.18
CCDC88C-203ENST00000389856 RASGEF1BQ0VAM2 473 aa16.15■□□□□ 0.18
CCDC88C-203ENST00000389856 EIF2B1Q14232 305 aaKnown RBP16.15■□□□□ 0.18
CCDC88C-203ENST00000389856 HSD17B12Q53GQ0 312 aa16.15■□□□□ 0.18
CCDC88C-203ENST00000389856 CARD17Q5XLA6 110 aa16.15■□□□□ 0.18
CCDC88C-203ENST00000389856 SLC25A47Q6Q0C1 308 aa16.15■□□□□ 0.18
CCDC88C-203ENST00000389856 RPTNQ6XPR3 784 aa16.15■□□□□ 0.18
CCDC88C-203ENST00000389856 NSMAFQ92636 917 aa16.15■□□□□ 0.18
CCDC88C-203ENST00000389856 TMEM54Q969K7 222 aa16.15■□□□□ 0.18
CCDC88C-203ENST00000389856 MCHR2Q969V1 340 aa16.15■□□□□ 0.18
CCDC88C-203ENST00000389856 RFT1Q96AA3 541 aa16.15■□□□□ 0.18
CCDC88C-203ENST00000389856 OR2M2Q96R28 347 aa16.15■□□□□ 0.18
CCDC88C-203ENST00000389856 MRPL22Q9NWU5 206 aaKnown RBP16.15■□□□□ 0.18
CCDC88C-203ENST00000389856 LINC00854A0A1B0GVQ3 168 aa16.14■□□□□ 0.17
CCDC88C-203ENST00000389856 A0A1W2PPL8 197 aa16.14■□□□□ 0.17
CCDC88C-203ENST00000389856 DVL2O14641 736 aa16.14■□□□□ 0.17
CCDC88C-203ENST00000389856 ORC5O43913 435 aa16.14■□□□□ 0.17
CCDC88C-203ENST00000389856 ZNF254O75437 659 aa16.14■□□□□ 0.17
CCDC88C-203ENST00000389856 QDPRP09417 244 aa16.14■□□□□ 0.17
CCDC88C-203ENST00000389856 MAPK3P27361 379 aaPredicted RBP16.14■□□□□ 0.17
CCDC88C-203ENST00000389856 ROM1Q03395 351 aa16.14■□□□□ 0.17
CCDC88C-203ENST00000389856 ETFDHQ16134 617 aa16.14■□□□□ 0.17
CCDC88C-203ENST00000389856 CARTPTQ16568 116 aa16.14■□□□□ 0.17
CCDC88C-203ENST00000389856 PCK2Q16822 640 aa16.14■□□□□ 0.17
CCDC88C-203ENST00000389856 DEGS2Q6QHC5 323 aa16.14■□□□□ 0.17
CCDC88C-203ENST00000389856 KRT77Q7Z794 578 aa16.14■□□□□ 0.17
CCDC88C-203ENST00000389856 ZNF679Q8IYX0 411 aa16.14■□□□□ 0.17
CCDC88C-203ENST00000389856 RFLNBQ8N5W9 214 aa16.14■□□□□ 0.17
CCDC88C-203ENST00000389856 OR4M1Q8NGD0 313 aa16.14■□□□□ 0.17
CCDC88C-203ENST00000389856 SLC39A7Q92504 469 aa16.14■□□□□ 0.17
CCDC88C-203ENST00000389856 OR8B4Q96RC9 309 aa16.14■□□□□ 0.17
CCDC88C-203ENST00000389856 TTTY10Q9BZA0 68 aa16.14■□□□□ 0.17
CCDC88C-203ENST00000389856 PRRG4Q9BZD6 226 aa16.14■□□□□ 0.17
CCDC88C-203ENST00000389856 NEK6Q9HC98 313 aa16.14■□□□□ 0.17
CCDC88C-203ENST00000389856 ACOXLQ9NUZ1 547 aa16.14■□□□□ 0.17
CCDC88C-203ENST00000389856 PARPBPQ9NWS1 579 aa16.14■□□□□ 0.17
CCDC88C-203ENST00000389856 POLR1DQ9Y2S0 133 aa16.14■□□□□ 0.17
CCDC88C-203ENST00000389856 FLVCR1Q9Y5Y0 555 aa16.14■□□□□ 0.17
CCDC88C-203ENST00000389856 CFAP54Q96N23 3096 aa16.14■□□□□ 0.17
CCDC88C-203ENST00000389856 OR6C65A6NJZ3 312 aa16.13■□□□□ 0.17
CCDC88C-203ENST00000389856 H0YC42 278 aa16.13■□□□□ 0.17
CCDC88C-203ENST00000389856 MKRN2OSH3BPM6 223 aa16.13■□□□□ 0.17
CCDC88C-203ENST00000389856 UBL3O95164 117 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms