RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 CCNB1P14635 433 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 GGT1P19440 569 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 HMOX2P30519 316 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 CEACAM3P40198 252 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 SLC1A2P43004 574 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 RPS5P46782 204 aaKnown RBP1.29□□□□□ -2.2
VPS13A-206ENST00000376646 MRPL19P49406 292 aaKnown RBP1.29□□□□□ -2.2
VPS13A-206ENST00000376646 ZNF138P52744 262 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 RCAN2Q14206 197 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 GINS1Q14691 196 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 TRAM2Q15035 370 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 RGNQ15493 299 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 OR7A5Q15622 319 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 PSMD5Q16401 504 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 HSDL1Q3SXM5 330 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 TTC23LQ6PF05 361 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 PLET1Q6UQ28 207 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 C12orf54Q6X4T0 127 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 SSX9Q7RTT3 188 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 TMEM150AQ86TG1 271 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 LINC01551Q86U37 167 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 C12orf56Q8IXR9 622 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 PQLC3Q8N755 202 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 ZNF721Q8TF20 911 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 CREB3L1Q96BA8 519 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 C8orf44Q96CB5 159 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 STARD4Q96DR4 205 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 SLC25A2Q9BXI2 301 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 LINC00597Q9H2U6 94 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 AUNIPQ9H7T9 357 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 NOX3Q9HBY0 568 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 TBX21Q9UL17 535 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 TBC1D24Q9ULP9 559 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 CAB39Q9Y376 341 aaPredicted RBP1.29□□□□□ -2.2
VPS13A-206ENST00000376646 MN1Q10571 1320 aaPredicted RBP1.29□□□□□ -2.2
VPS13A-206ENST00000376646 TTC41PQ6P2S7 1318 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 UBN2Q6ZU65 1347 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 MAPK8IP3Q9UPT6 1336 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 LRP4O75096 1905 aa1.29□□□□□ -2.2
VPS13A-206ENST00000376646 IGLV3-16A0A075B6K0 115 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 IGLV1-36A0A0B4J1U3 117 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 NCF1BA6NI72 391 aaPredicted RBP1.28□□□□□ -2.2
VPS13A-206ENST00000376646 LRRIQ4A6NIV6 560 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 LYRM9A8MSI8 78 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 NCF1CA8MVU1 366 aaPredicted RBP1.28□□□□□ -2.2
VPS13A-206ENST00000376646 SLC9A3R1O14745 358 aaPredicted RBP1.28□□□□□ -2.2
VPS13A-206ENST00000376646 AIREO43918 545 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 ENTPD5O75356 428 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 SPAG7O75391 227 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 FLOT1O75955 427 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 UBTFL6P0CB48 400 aaPredicted RBP1.28□□□□□ -2.2
VPS13A-206ENST00000376646 RAB3BP20337 219 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 OR1E1P30953 314 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 RPS9P46781 194 aaKnown RBP1.28□□□□□ -2.2
VPS13A-206ENST00000376646 CSNK1A1P48729 337 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 SP4Q02446 784 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 ITIH4Q14624 930 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 DEFB116Q30KQ4 102 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 ARL9Q6T311 187 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 ZFP2Q6ZN57 461 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 FAM92BQ6ZTR7 304 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 KATNAL2Q8IYT4 538 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 TTC29Q8NA56 475 aaPredicted RBP1.28□□□□□ -2.2
VPS13A-206ENST00000376646 OR10G4Q8NGN3 311 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 OR9G4Q8NGQ1 327 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 OR2A1Q8NGT9 310 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 COL21A1Q96P44 957 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 XPO6Q96QU8 1125 aaKnown RBP1.28□□□□□ -2.2
VPS13A-206ENST00000376646 MICU1Q9BPX6 476 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 CHAC1Q9BUX1 264 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 UCK2Q9BZX2 261 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 ACTR3CQ9C0K3 210 aaPredicted RBP1.28□□□□□ -2.2
VPS13A-206ENST00000376646 ELOVL6Q9H5J4 265 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 CYTL1Q9NRR1 136 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 MTCH1Q9NZJ7 389 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 UVRAGQ9P2Y5 699 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 IGLV4-69A0A075B6H9 119 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 TRAV25A0A0B4J276 109 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 KBTBD11-OT1A0A1B0GTJ5 212 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 SUPT3HB4E1H0 165 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 GOLGA8TH3BQL2 631 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 SCAMP2O15127 329 aaKnown RBP1.28□□□□□ -2.2
VPS13A-206ENST00000376646 SNAI2O43623 268 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 RDH16O75452 317 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 LSM8O95777 96 aaKnown RBP1.28□□□□□ -2.2
VPS13A-206ENST00000376646 ARG1P05089 322 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 BCHEP06276 602 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 EIF4EP06730 217 aaKnown RBP1.28□□□□□ -2.2
VPS13A-206ENST00000376646 ZNF823P16415 610 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 F2RP25116 425 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 LONP1P36776 959 aaKnown RBP1.28□□□□□ -2.2
VPS13A-206ENST00000376646 UBE2MP61081 183 aaKnown RBP1.28□□□□□ -2.2
VPS13A-206ENST00000376646 HERVK_113P61574 105 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 RAP1AP62834 184 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 IRF8Q02556 426 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 XKR4Q5GH76 650 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 GPR107Q5VW38 600 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 METTL21CQ5VZV1 264 aa1.28□□□□□ -2.2
VPS13A-206ENST00000376646 CEMP1Q6PRD7 247 aaPredicted RBP1.28□□□□□ -2.2
VPS13A-206ENST00000376646 ZNF561Q8N587 486 aa1.28□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms