RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 ANXA7P20073 488 aaKnown RBP18.6■□□□□ 0.57
CCDC88B-203ENST00000359902 MECP2P51608 486 aaKnown RBP18.6■□□□□ 0.57
CCDC88B-203ENST00000359902 BIDP55957 195 aa18.6■□□□□ 0.57
CCDC88B-203ENST00000359902 C19orf57Q0VDD7 668 aa18.6■□□□□ 0.57
CCDC88B-203ENST00000359902 INPP5JQ15735 1006 aaPredicted RBP18.6■□□□□ 0.57
CCDC88B-203ENST00000359902 GLYATL3Q5SZD4 288 aa18.6■□□□□ 0.57
CCDC88B-203ENST00000359902 DEGS2Q6QHC5 323 aa18.6■□□□□ 0.57
CCDC88B-203ENST00000359902 NLRC3Q7RTR2 1065 aa18.6■□□□□ 0.57
CCDC88B-203ENST00000359902 OR13C3Q8NGS6 347 aa18.6■□□□□ 0.57
CCDC88B-203ENST00000359902 CMKLR1Q99788 373 aa18.6■□□□□ 0.57
CCDC88B-203ENST00000359902 SLC26A1Q9H2B4 701 aa18.6■□□□□ 0.57
CCDC88B-203ENST00000359902 SDHAF3Q9NRP4 125 aa18.6■□□□□ 0.57
CCDC88B-203ENST00000359902 OCIAD1Q9NX40 245 aa18.6■□□□□ 0.57
CCDC88B-203ENST00000359902 PILRBQ9UKJ0 227 aa18.6■□□□□ 0.57
CCDC88B-203ENST00000359902 WIF1Q9Y5W5 379 aa18.6■□□□□ 0.57
CCDC88B-203ENST00000359902 B3GALT1Q9Y5Z6 326 aa18.6■□□□□ 0.57
CCDC88B-203ENST00000359902 ADAMTS9Q9P2N4 1935 aa18.6■□□□□ 0.57
CCDC88B-203ENST00000359902 KIF26BQ2KJY2 2108 aa18.6■□□□□ 0.57
CCDC88B-203ENST00000359902 TMEM269A0A1B0GVZ9 245 aa18.6■□□□□ 0.57
CCDC88B-203ENST00000359902 DNASE1P24855 282 aa18.6■□□□□ 0.57
CCDC88B-203ENST00000359902 BPHLQ86WA6 291 aaPredicted RBP18.6■□□□□ 0.57
CCDC88B-203ENST00000359902 OR51A2Q8NGJ7 313 aa18.6■□□□□ 0.57
CCDC88B-203ENST00000359902 ATG5Q9H1Y0 275 aa18.6■□□□□ 0.57
CCDC88B-203ENST00000359902 METTL17Q9H7H0 456 aaPredicted RBP18.6■□□□□ 0.57
CCDC88B-203ENST00000359902 TAS2R8Q9NYW2 309 aa18.6■□□□□ 0.57
CCDC88B-203ENST00000359902 KLHL13Q9P2N7 655 aa18.6■□□□□ 0.57
CCDC88B-203ENST00000359902 RPH3AQ9Y2J0 694 aaPredicted RBP18.6■□□□□ 0.57
CCDC88B-203ENST00000359902 MRPS18BQ9Y676 258 aaKnown RBP18.6■□□□□ 0.57
CCDC88B-203ENST00000359902 LOC107986453A0A1B0GWG9 222 aa18.59■□□□□ 0.57
CCDC88B-203ENST00000359902 A0A1W2PNV4 684 aa18.59■□□□□ 0.57
CCDC88B-203ENST00000359902 MEN1O00255 615 aa18.59■□□□□ 0.57
CCDC88B-203ENST00000359902 ACHEP22303 614 aa18.59■□□□□ 0.57
CCDC88B-203ENST00000359902 HTR2CP28335 458 aa18.59■□□□□ 0.57
CCDC88B-203ENST00000359902 OR4C16Q8NGL9 310 aa18.59■□□□□ 0.57
CCDC88B-203ENST00000359902 RNF133Q8WVZ7 376 aa18.59■□□□□ 0.57
CCDC88B-203ENST00000359902 CENPMQ9NSP4 180 aa18.59■□□□□ 0.57
CCDC88B-203ENST00000359902 G3V3Q6 166 aa18.58■□□□□ 0.57
CCDC88B-203ENST00000359902 CSF1P09603 554 aa18.58■□□□□ 0.57
CCDC88B-203ENST00000359902 FAUP35544 74 aaKnown RBP18.58■□□□□ 0.57
CCDC88B-203ENST00000359902 PER3P56645 1201 aa18.58■□□□□ 0.57
CCDC88B-203ENST00000359902 FOXK1P85037 733 aa18.58■□□□□ 0.57
CCDC88B-203ENST00000359902 LGALSLQ3ZCW2 172 aaPredicted RBP18.58■□□□□ 0.57
CCDC88B-203ENST00000359902 PMS2CLQ68D20 193 aa18.58■□□□□ 0.57
CCDC88B-203ENST00000359902 MRPL14Q6P1L8 145 aaKnown RBP18.58■□□□□ 0.57
CCDC88B-203ENST00000359902 ZNF704Q6ZNC4 412 aaPredicted RBP18.58■□□□□ 0.57
CCDC88B-203ENST00000359902 C11orf40Q8WZ69 217 aa18.58■□□□□ 0.57
CCDC88B-203ENST00000359902 MRPL13Q9BYD1 178 aaKnown RBP18.58■□□□□ 0.57
CCDC88B-203ENST00000359902 C19orf25Q9UFG5 118 aaPredicted RBP18.58■□□□□ 0.57
CCDC88B-203ENST00000359902 CGGBP1Q9UFW8 167 aaPredicted RBP18.58■□□□□ 0.57
CCDC88B-203ENST00000359902 LOC101059948A0A1B0GTJ6 334 aa18.58■□□□□ 0.56
CCDC88B-203ENST00000359902 LMX1BO60663 402 aa18.58■□□□□ 0.56
CCDC88B-203ENST00000359902 DKK1O94907 266 aa18.58■□□□□ 0.56
CCDC88B-203ENST00000359902 OPN1LWP04000 364 aa18.58■□□□□ 0.56
CCDC88B-203ENST00000359902 IL5P05113 134 aa18.58■□□□□ 0.56
CCDC88B-203ENST00000359902 H2BFMP0C1H6 154 aa18.58■□□□□ 0.56
CCDC88B-203ENST00000359902 PRSS3P35030 304 aa18.58■□□□□ 0.56
CCDC88B-203ENST00000359902 DNASE1L1P49184 302 aa18.58■□□□□ 0.56
CCDC88B-203ENST00000359902 GNG2P59768 71 aa18.58■□□□□ 0.56
CCDC88B-203ENST00000359902 TOMM20Q15388 145 aa18.58■□□□□ 0.56
CCDC88B-203ENST00000359902 OR8H1Q8NGG4 311 aa18.58■□□□□ 0.56
CCDC88B-203ENST00000359902 OR4D10Q8NGI6 311 aa18.58■□□□□ 0.56
CCDC88B-203ENST00000359902 OR2T35Q8NGX2 323 aa18.58■□□□□ 0.56
CCDC88B-203ENST00000359902 SLC22A8Q8TCC7 542 aa18.58■□□□□ 0.56
CCDC88B-203ENST00000359902 FBXL2Q9UKC9 423 aa18.58■□□□□ 0.56
CCDC88B-203ENST00000359902 RALGAPA1Q6GYQ0 2036 aa18.58■□□□□ 0.56
CCDC88B-203ENST00000359902 DCDC2BA2VCK2 349 aa18.57■□□□□ 0.56
CCDC88B-203ENST00000359902 MEGF11A6BM72 1044 aa18.57■□□□□ 0.56
CCDC88B-203ENST00000359902 PYCARD-AS1I3L0S3 204 aa18.57■□□□□ 0.56
CCDC88B-203ENST00000359902 TPD52L2O43399 206 aaKnown RBP18.57■□□□□ 0.56
CCDC88B-203ENST00000359902 TPOP07202 933 aa18.57■□□□□ 0.56
CCDC88B-203ENST00000359902 PHF19Q5T6S3 580 aa18.57■□□□□ 0.56
CCDC88B-203ENST00000359902 ZBTB37Q5TC79 503 aa18.57■□□□□ 0.56
CCDC88B-203ENST00000359902 TMEM244Q5VVB8 128 aa18.57■□□□□ 0.56
CCDC88B-203ENST00000359902 HIST2H2ABQ8IUE6 130 aaPredicted RBP18.57■□□□□ 0.56
CCDC88B-203ENST00000359902 OR2M3Q8NG83 312 aa18.57■□□□□ 0.56
CCDC88B-203ENST00000359902 OR5M1Q8NGP8 315 aa18.57■□□□□ 0.56
CCDC88B-203ENST00000359902 RBP7Q96R05 134 aa18.57■□□□□ 0.56
CCDC88B-203ENST00000359902 RASL10BQ96S79 203 aa18.57■□□□□ 0.56
CCDC88B-203ENST00000359902 HEXA-AS1Q9H8Q6 139 aa18.57■□□□□ 0.56
CCDC88B-203ENST00000359902 MEIS3P1A6NDR6 274 aa18.57■□□□□ 0.56
CCDC88B-203ENST00000359902 EIF1AYO14602 144 aaKnown RBP18.57■□□□□ 0.56
CCDC88B-203ENST00000359902 GDF9O60383 454 aa18.57■□□□□ 0.56
CCDC88B-203ENST00000359902 CPN1P15169 458 aa18.57■□□□□ 0.56
CCDC88B-203ENST00000359902 MMP16P51512 607 aa18.57■□□□□ 0.56
CCDC88B-203ENST00000359902 SPOCK1Q08629 439 aa18.57■□□□□ 0.56
CCDC88B-203ENST00000359902 CSRP2Q16527 193 aa18.57■□□□□ 0.56
CCDC88B-203ENST00000359902 SPICQ8N5J4 248 aa18.57■□□□□ 0.56
CCDC88B-203ENST00000359902 OR6M1Q8NGM8 313 aa18.57■□□□□ 0.56
CCDC88B-203ENST00000359902 NAT6Q93015 286 aa18.57■□□□□ 0.56
CCDC88B-203ENST00000359902 DEFB126Q9BYW3 111 aa18.57■□□□□ 0.56
CCDC88B-203ENST00000359902 TMEM185BQ9H7F4 350 aa18.57■□□□□ 0.56
CCDC88B-203ENST00000359902 ZNF69Q9UC07 566 aa18.57■□□□□ 0.56
CCDC88B-203ENST00000359902 ELF5Q9UKW6 265 aaPredicted RBP18.57■□□□□ 0.56
CCDC88B-203ENST00000359902 CCDC163A0A0D9SF12 145 aa18.56■□□□□ 0.56
CCDC88B-203ENST00000359902 P2RY10O00398 339 aa18.56■□□□□ 0.56
CCDC88B-203ENST00000359902 P2RY4P51582 365 aa18.56■□□□□ 0.56
CCDC88B-203ENST00000359902 ZNF626Q68DY1 528 aa18.56■□□□□ 0.56
CCDC88B-203ENST00000359902 TEX261Q6UWH6 196 aa18.56■□□□□ 0.56
CCDC88B-203ENST00000359902 SPACA9Q96E40 222 aaPredicted RBP18.56■□□□□ 0.56
CCDC88B-203ENST00000359902 MGAT4CQ9UBM8 478 aa18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms