RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 BPHLQ86WA6 291 aaPredicted RBP17.31■□□□□ 0.36
COL9A3-201ENST00000343916 ST7LQ8TDW4 575 aa17.31■□□□□ 0.36
COL9A3-201ENST00000343916 SLC25A44Q96H78 314 aaPredicted RBP17.31■□□□□ 0.36
COL9A3-201ENST00000343916 ZNF275Q9NSD4 429 aaPredicted RBP17.31■□□□□ 0.36
COL9A3-201ENST00000343916 CENPMQ9NSP4 180 aa17.31■□□□□ 0.36
COL9A3-201ENST00000343916 COQ3Q9NZJ6 369 aa17.31■□□□□ 0.36
COL9A3-201ENST00000343916 EIF3KQ9UBQ5 218 aaKnown RBP17.31■□□□□ 0.36
COL9A3-201ENST00000343916 SPEF1Q9Y4P9 236 aa17.31■□□□□ 0.36
COL9A3-201ENST00000343916 TMEM272A0A1B0GTI8 110 aa17.3■□□□□ 0.36
COL9A3-201ENST00000343916 DCDC2BA2VCK2 349 aa17.3■□□□□ 0.36
COL9A3-201ENST00000343916 A6NIZ1 184 aa17.3■□□□□ 0.36
COL9A3-201ENST00000343916 SRSF10O75494 262 aaKnown RBP17.3■□□□□ 0.36
COL9A3-201ENST00000343916 RBBP9O75884 186 aa17.3■□□□□ 0.36
COL9A3-201ENST00000343916 PTGS2P35354 604 aa17.3■□□□□ 0.36
COL9A3-201ENST00000343916 BIDP55957 195 aa17.3■□□□□ 0.36
COL9A3-201ENST00000343916 RAP1BP61224 184 aa17.3■□□□□ 0.36
COL9A3-201ENST00000343916 RAP1AP62834 184 aa17.3■□□□□ 0.36
COL9A3-201ENST00000343916 ZP4Q12836 540 aa17.3■□□□□ 0.36
COL9A3-201ENST00000343916 HLA-BQ31612 363 aa17.3■□□□□ 0.36
COL9A3-201ENST00000343916 GLYATL3Q5SZD4 288 aa17.3■□□□□ 0.36
COL9A3-201ENST00000343916 METTL7AQ9H8H3 244 aa17.3■□□□□ 0.36
COL9A3-201ENST00000343916 PPIEQ9UNP9 301 aaKnown RBP17.3■□□□□ 0.36
COL9A3-201ENST00000343916 R4GMQ9 66 aa17.3■□□□□ 0.36
COL9A3-201ENST00000343916 LINC00862A6NCI5 91 aa17.3■□□□□ 0.36
COL9A3-201ENST00000343916 LIPT2A6NK58 231 aa17.3■□□□□ 0.36
COL9A3-201ENST00000343916 H7C417 338 aa17.3■□□□□ 0.36
COL9A3-201ENST00000343916 TGM6O95932 706 aa17.3■□□□□ 0.36
COL9A3-201ENST00000343916 PTGDSP41222 190 aa17.3■□□□□ 0.36
COL9A3-201ENST00000343916 ZNF41P51814 821 aaPredicted RBP17.3■□□□□ 0.36
COL9A3-201ENST00000343916 MAP2K6P52564 334 aa17.3■□□□□ 0.36
COL9A3-201ENST00000343916 DNM1P46Q6ZS02 220 aa17.3■□□□□ 0.36
COL9A3-201ENST00000343916 PPP1R3BQ86XI6 285 aa17.3■□□□□ 0.36
COL9A3-201ENST00000343916 ZNF454Q8N9F8 522 aa17.3■□□□□ 0.36
COL9A3-201ENST00000343916 OR2T35Q8NGX2 323 aa17.3■□□□□ 0.36
COL9A3-201ENST00000343916 CHIAQ9BZP6 476 aa17.3■□□□□ 0.36
COL9A3-201ENST00000343916 G6PC2Q9NQR9 355 aa17.3■□□□□ 0.36
COL9A3-201ENST00000343916 MTFP1Q9UDX5 166 aa17.3■□□□□ 0.36
COL9A3-201ENST00000343916 FREM2Q5SZK8 3169 aa17.29■□□□□ 0.36
COL9A3-201ENST00000343916 LOC100289279A0A1B0GTE1 492 aa17.29■□□□□ 0.36
COL9A3-201ENST00000343916 LOC107986453A0A1B0GWG9 222 aa17.29■□□□□ 0.36
COL9A3-201ENST00000343916 I3L521 148 aa17.29■□□□□ 0.36
COL9A3-201ENST00000343916 CD2P06729 351 aa17.29■□□□□ 0.36
COL9A3-201ENST00000343916 PNLIPP16233 465 aa17.29■□□□□ 0.36
COL9A3-201ENST00000343916 DNASE1P24855 282 aa17.29■□□□□ 0.36
COL9A3-201ENST00000343916 ZNF81P51508 661 aa17.29■□□□□ 0.36
COL9A3-201ENST00000343916 SUMO3P55854 103 aaPredicted RBP17.29■□□□□ 0.36
COL9A3-201ENST00000343916 SCAND1P57086 179 aa17.29■□□□□ 0.36
COL9A3-201ENST00000343916 SPOCK1Q08629 439 aa17.29■□□□□ 0.36
COL9A3-201ENST00000343916 MYBPHQ13203 477 aa17.29■□□□□ 0.36
COL9A3-201ENST00000343916 PHF19Q5T6S3 580 aa17.29■□□□□ 0.36
COL9A3-201ENST00000343916 OR4C16Q8NGL9 310 aa17.29■□□□□ 0.36
COL9A3-201ENST00000343916 OR13C3Q8NGS6 347 aa17.29■□□□□ 0.36
COL9A3-201ENST00000343916 LRRC20Q8TCA0 184 aa17.29■□□□□ 0.36
COL9A3-201ENST00000343916 ZNF436Q9C0F3 470 aaPredicted RBP17.29■□□□□ 0.36
COL9A3-201ENST00000343916 ATG5Q9H1Y0 275 aa17.29■□□□□ 0.36
COL9A3-201ENST00000343916 SERINC1Q9NRX5 453 aa17.29■□□□□ 0.36
COL9A3-201ENST00000343916 CKLFQ9UBR5 152 aa17.29■□□□□ 0.36
COL9A3-201ENST00000343916 ZNF69Q9UC07 566 aa17.29■□□□□ 0.36
COL9A3-201ENST00000343916 FBXL2Q9UKC9 423 aa17.29■□□□□ 0.36
COL9A3-201ENST00000343916 MRPS18BQ9Y676 258 aaKnown RBP17.29■□□□□ 0.36
COL9A3-201ENST00000343916 A0A1B0GUH1 482 aa17.29■□□□□ 0.36
COL9A3-201ENST00000343916 TMEM269A0A1B0GVZ9 245 aa17.29■□□□□ 0.36
COL9A3-201ENST00000343916 ZNF208O43345 1280 aa17.29■□□□□ 0.36
COL9A3-201ENST00000343916 PDGFAP04085 211 aa17.29■□□□□ 0.36
COL9A3-201ENST00000343916 MFSD13AQ14CX5 517 aa17.29■□□□□ 0.36
COL9A3-201ENST00000343916 PLPPR5Q32ZL2 321 aa17.29■□□□□ 0.36
COL9A3-201ENST00000343916 FAM166AQ6J272 317 aa17.29■□□□□ 0.36
COL9A3-201ENST00000343916 OR5L2Q8NGL0 311 aa17.29■□□□□ 0.36
COL9A3-201ENST00000343916 POC1BQ8TC44 478 aa17.29■□□□□ 0.36
COL9A3-201ENST00000343916 C15orf40Q8WUR7 153 aa17.29■□□□□ 0.36
COL9A3-201ENST00000343916 B3GAT1Q9P2W7 334 aa17.29■□□□□ 0.36
COL9A3-201ENST00000343916 KCNN3Q9UGI6 736 aa17.29■□□□□ 0.36
COL9A3-201ENST00000343916 OR52A1Q9UKL2 312 aa17.29■□□□□ 0.36
COL9A3-201ENST00000343916 A0A1W2PNR3 127 aa17.28■□□□□ 0.36
COL9A3-201ENST00000343916 ZNF250P15622 560 aa17.28■□□□□ 0.36
COL9A3-201ENST00000343916 LGALSLQ3ZCW2 172 aaPredicted RBP17.28■□□□□ 0.36
COL9A3-201ENST00000343916 METTL11BQ5VVY1 283 aa17.28■□□□□ 0.36
COL9A3-201ENST00000343916 DNM1P34Q6PK57 102 aa17.28■□□□□ 0.36
COL9A3-201ENST00000343916 GLDNQ6ZMI3 551 aaPredicted RBP17.28■□□□□ 0.36
COL9A3-201ENST00000343916 NLRC3Q7RTR2 1065 aa17.28■□□□□ 0.36
COL9A3-201ENST00000343916 OR52B4Q8NGK2 314 aa17.28■□□□□ 0.36
COL9A3-201ENST00000343916 OR6S1Q8NH40 331 aa17.28■□□□□ 0.36
COL9A3-201ENST00000343916 THRSPQ92748 146 aa17.28■□□□□ 0.36
COL9A3-201ENST00000343916 SLC25A28Q96A46 364 aa17.28■□□□□ 0.36
COL9A3-201ENST00000343916 PRMT8Q9NR22 394 aaPredicted RBP17.28■□□□□ 0.36
COL9A3-201ENST00000343916 CA10Q9NS85 328 aa17.28■□□□□ 0.36
COL9A3-201ENST00000343916 HHLA2Q9UM44 414 aa17.28■□□□□ 0.36
COL9A3-201ENST00000343916 WIF1Q9Y5W5 379 aa17.28■□□□□ 0.36
COL9A3-201ENST00000343916 A0A1B0GVI7 797 aa17.28■□□□□ 0.36
COL9A3-201ENST00000343916 G3V3Q6 166 aa17.28■□□□□ 0.36
COL9A3-201ENST00000343916 ZFAND5O76080 213 aa17.28■□□□□ 0.36
COL9A3-201ENST00000343916 NDUFB6O95139 128 aa17.28■□□□□ 0.36
COL9A3-201ENST00000343916 CFPP27918 469 aa17.28■□□□□ 0.36
COL9A3-201ENST00000343916 TMEM205Q6UW68 189 aa17.28■□□□□ 0.36
COL9A3-201ENST00000343916 SEZ6L2Q6UXD5 910 aa17.28■□□□□ 0.36
COL9A3-201ENST00000343916 OR8S1Q8NH09 359 aa17.28■□□□□ 0.36
COL9A3-201ENST00000343916 DVL3Q92997 716 aaPredicted RBP17.28■□□□□ 0.36
COL9A3-201ENST00000343916 CMKLR1Q99788 373 aa17.28■□□□□ 0.36
COL9A3-201ENST00000343916 EML6Q6ZMW3 1958 aa17.27■□□□□ 0.36
COL9A3-201ENST00000343916 PYCARD-AS1I3L0S3 204 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms