RNA–Protein interactions for RNA: ENST00000340541.4

VAPA-201, Transcript of VAMP associated protein A, humanhuman

TSL 5 BASIC

Gene VAPA, Length 1,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-201ENST00000340541 ICMTO60725 284 aa13.21□□□□□ -0.29
VAPA-201ENST00000340541 GSTM3P21266 225 aa13.21□□□□□ -0.29
VAPA-201ENST00000340541 CRABP1P29762 137 aa13.21□□□□□ -0.29
VAPA-201ENST00000340541 RASSF2P50749 326 aa13.21□□□□□ -0.29
VAPA-201ENST00000340541 UCP2P55851 309 aa13.21□□□□□ -0.29
VAPA-201ENST00000340541 RPS23P62266 143 aaKnown RBP13.21□□□□□ -0.29
VAPA-201ENST00000340541 LSM6P62312 80 aaKnown RBP13.21□□□□□ -0.29
VAPA-201ENST00000340541 CBX1P83916 185 aa13.21□□□□□ -0.29
VAPA-201ENST00000340541 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.21□□□□□ -0.293e-6■■■□□ 19
VAPA-201ENST00000340541 LOXL1Q08397 574 aaPredicted RBP13.21□□□□□ -0.29
VAPA-201ENST00000340541 SLC35F1Q5T1Q4 408 aa13.21□□□□□ -0.29
VAPA-201ENST00000340541 ZBTB46Q86UZ6 589 aa13.21□□□□□ -0.29
VAPA-201ENST00000340541 JAZF1Q86VZ6 243 aa13.21□□□□□ -0.29
VAPA-201ENST00000340541 ZNF101Q8IZC7 436 aa13.21□□□□□ -0.29
VAPA-201ENST00000340541 ZCCHC24Q8N2G6 241 aaKnown RBP13.21□□□□□ -0.29
VAPA-201ENST00000340541 LNX2Q8N448 690 aa13.21□□□□□ -0.29
VAPA-201ENST00000340541 SDR9C7Q8NEX9 313 aa13.21□□□□□ -0.29
VAPA-201ENST00000340541 OR52L1Q8NGH7 329 aa13.21□□□□□ -0.29
VAPA-201ENST00000340541 OR52E2Q8NGJ4 325 aa13.21□□□□□ -0.29
VAPA-201ENST00000340541 OR4Q3Q8NH05 313 aa13.21□□□□□ -0.29
VAPA-201ENST00000340541 GIPC3Q8TF64 312 aa13.21□□□□□ -0.29
VAPA-201ENST00000340541 VRK1Q99986 396 aaPredicted RBP13.21□□□□□ -0.29
VAPA-201ENST00000340541 SYT3Q9BQG1 590 aa13.21□□□□□ -0.29
VAPA-201ENST00000340541 RACGAP1Q9H0H5 632 aa13.21□□□□□ -0.29
VAPA-201ENST00000340541 OR51B6Q9H340 312 aa13.21□□□□□ -0.29
VAPA-201ENST00000340541 FN3KQ9H479 309 aa13.21□□□□□ -0.29
VAPA-201ENST00000340541 RPRD1BQ9NQG5 326 aaKnown RBP13.21□□□□□ -0.29
VAPA-201ENST00000340541 TMEM160Q9NX00 188 aa13.21□□□□□ -0.29
VAPA-201ENST00000340541 REV1Q9UBZ9 1251 aa13.21□□□□□ -0.29
VAPA-201ENST00000340541 FZR1Q9UM11 496 aa13.21□□□□□ -0.29
VAPA-201ENST00000340541 IGLV3-9A0A075B6K5 115 aa13.2□□□□□ -0.3
VAPA-201ENST00000340541 A0A096LNT2 108 aa13.2□□□□□ -0.3
VAPA-201ENST00000340541 C5orf49A4QMS7 147 aa13.2□□□□□ -0.3
VAPA-201ENST00000340541 SOX14O95416 240 aa13.2□□□□□ -0.3
VAPA-201ENST00000340541 RENP00797 406 aa13.2□□□□□ -0.3
VAPA-201ENST00000340541 TFP02787 698 aa13.2□□□□□ -0.3
VAPA-201ENST00000340541 ZNF250P15622 560 aa13.2□□□□□ -0.3
VAPA-201ENST00000340541 NOS3P29474 1203 aa13.2□□□□□ -0.3
VAPA-201ENST00000340541 GDI2P50395 445 aaKnown RBP13.2□□□□□ -0.3
VAPA-201ENST00000340541 SCRN3Q0VDG4 424 aa13.2□□□□□ -0.3
VAPA-201ENST00000340541 AQP6Q13520 282 aa13.2□□□□□ -0.3
VAPA-201ENST00000340541 MEP1BQ16820 701 aa13.2□□□□□ -0.3
VAPA-201ENST00000340541 CHRFAM7AQ494W8 412 aa13.2□□□□□ -0.3
VAPA-201ENST00000340541 RGS7BPQ6MZT1 257 aaPredicted RBP13.2□□□□□ -0.3
VAPA-201ENST00000340541 DNM1P34Q6PK57 102 aa13.2□□□□□ -0.3
VAPA-201ENST00000340541 CLEC2AQ6UVW9 174 aa13.2□□□□□ -0.3
VAPA-201ENST00000340541 ALDH16A1Q8IZ83 802 aa13.2□□□□□ -0.3
VAPA-201ENST00000340541 HS3ST5Q8IZT8 346 aa13.2□□□□□ -0.3
VAPA-201ENST00000340541 SLC26A10Q8NG04 563 aa13.2□□□□□ -0.3
VAPA-201ENST00000340541 TSSK6Q9BXA6 273 aa13.2□□□□□ -0.3
VAPA-201ENST00000340541 MMADHCQ9H3L0 296 aaPredicted RBP13.2□□□□□ -0.3
VAPA-201ENST00000340541 NTN4Q9HB63 628 aa13.2□□□□□ -0.3
VAPA-201ENST00000340541 SRA1Q9HD15 236 aaKnown RBP13.2□□□□□ -0.3
VAPA-201ENST00000340541 TBC1D23Q9NUY8 699 aa13.2□□□□□ -0.3
VAPA-201ENST00000340541 ARMC1Q9NVT9 282 aa13.2□□□□□ -0.3
VAPA-201ENST00000340541 ASH2LQ9UBL3 628 aa13.2□□□□□ -0.3
VAPA-201ENST00000340541 FBXO9Q9UK97 447 aaPredicted RBP13.2□□□□□ -0.3
VAPA-201ENST00000340541 FKBP7Q9Y680 259 aa13.2□□□□□ -0.3
VAPA-201ENST00000340541 LHFPL6Q9Y693 200 aa13.2□□□□□ -0.3
VAPA-201ENST00000340541 SYNGR3O43761 229 aa13.19□□□□□ -0.3
VAPA-201ENST00000340541 CLPTM1O96005 669 aa13.19□□□□□ -0.3
VAPA-201ENST00000340541 ADRA2AP08913 450 aa13.19□□□□□ -0.3
VAPA-201ENST00000340541 COX5BP10606 129 aa13.19□□□□□ -0.3
VAPA-201ENST00000340541 SLC25A16P16260 332 aa13.19□□□□□ -0.3
VAPA-201ENST00000340541 CCNOP22674 350 aa13.19□□□□□ -0.3
VAPA-201ENST00000340541 RAD52P43351 418 aa13.19□□□□□ -0.3
VAPA-201ENST00000340541 HIST1H3AP68431 136 aa13.19□□□□□ -0.3
VAPA-201ENST00000340541 COX10Q12887 443 aa13.19□□□□□ -0.3
VAPA-201ENST00000340541 MAD2L1BPQ15013 274 aaPredicted RBP13.19□□□□□ -0.3
VAPA-201ENST00000340541 CCDC92Q53HC0 331 aaPredicted RBP13.19□□□□□ -0.3
VAPA-201ENST00000340541 TMEM255AQ5JRV8 349 aa13.19□□□□□ -0.3
VAPA-201ENST00000340541 HIST2H3PS2Q5TEC6 136 aa13.19□□□□□ -0.3
VAPA-201ENST00000340541 RFPL4BQ6ZWI9 263 aa13.19□□□□□ -0.3
VAPA-201ENST00000340541 HIST2H3AQ71DI3 136 aa13.19□□□□□ -0.3
VAPA-201ENST00000340541 ASRGL1Q7L266 308 aa13.19□□□□□ -0.3
VAPA-201ENST00000340541 VASH1Q7L8A9 365 aaPredicted RBP13.19□□□□□ -0.3
VAPA-201ENST00000340541 CYB561A3Q8NBI2 242 aa13.19□□□□□ -0.3
VAPA-201ENST00000340541 C10orf105Q8TEF2 133 aa13.19□□□□□ -0.3
VAPA-201ENST00000340541 ZNRF4Q8WWF5 429 aa13.19□□□□□ -0.3
VAPA-201ENST00000340541 TMEM158Q8WZ71 300 aa13.19□□□□□ -0.3
VAPA-201ENST00000340541 UTP4Q969X6 686 aaKnown RBP13.19□□□□□ -0.3
VAPA-201ENST00000340541 BCL2L14Q9BZR8 327 aa13.19□□□□□ -0.3
VAPA-201ENST00000340541 PDP1Q9P0J1 537 aaPredicted RBP13.19□□□□□ -0.3
VAPA-201ENST00000340541 DNAJB9Q9UBS3 223 aa13.19□□□□□ -0.3
VAPA-201ENST00000340541 CDC42EP3Q9UKI2 254 aa13.19□□□□□ -0.3
VAPA-201ENST00000340541 STAB1Q9NY15 2570 aa13.18□□□□□ -0.3
VAPA-201ENST00000340541 OR6C6A6NF89 314 aa13.18□□□□□ -0.3
VAPA-201ENST00000340541 M0R233 179 aa13.18□□□□□ -0.3
VAPA-201ENST00000340541 GNGT2O14610 69 aa13.18□□□□□ -0.3
VAPA-201ENST00000340541 RER1O15258 196 aa13.18□□□□□ -0.3
VAPA-201ENST00000340541 SGCEO43556 437 aa13.18□□□□□ -0.3
VAPA-201ENST00000340541 DOK2O60496 412 aa13.18□□□□□ -0.3
VAPA-201ENST00000340541 NGFP01138 241 aa13.18□□□□□ -0.3
VAPA-201ENST00000340541 LCKP06239 509 aa13.18□□□□□ -0.3
VAPA-201ENST00000340541 CSF3P09919 207 aa13.18□□□□□ -0.3
VAPA-201ENST00000340541 ALDH3B1P43353 468 aa13.18□□□□□ -0.3
VAPA-201ENST00000340541 CCNIQ14094 377 aa13.18□□□□□ -0.3
VAPA-201ENST00000340541 SLC36A3Q495N2 470 aa13.18□□□□□ -0.3
VAPA-201ENST00000340541 SLC37A3Q8NCC5 494 aa13.18□□□□□ -0.3
VAPA-201ENST00000340541 OR2T33Q8NG76 320 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms