RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 SNAI1O95863 264 aaPredicted RBP12.73□□□□□ -0.37
CSPG4-201ENST00000308508 ZBTB37Q5TC79 503 aa12.73□□□□□ -0.37
CSPG4-201ENST00000308508 DLL4Q9NR61 685 aa12.73□□□□□ -0.37
CSPG4-201ENST00000308508 A0A1B0GWA3 101 aa12.73□□□□□ -0.37
CSPG4-201ENST00000308508 BCL2L11O43521 198 aa12.73□□□□□ -0.37
CSPG4-201ENST00000308508 CNMDO75829 334 aa12.73□□□□□ -0.37
CSPG4-201ENST00000308508 RAD52P43351 418 aa12.73□□□□□ -0.37
CSPG4-201ENST00000308508 LBHQ53QV2 105 aaPredicted RBP12.73□□□□□ -0.37
CSPG4-201ENST00000308508 TEX261Q6UWH6 196 aa12.73□□□□□ -0.37
CSPG4-201ENST00000308508 ZNF2Q9BSG1 426 aaPredicted RBP12.73□□□□□ -0.37
CSPG4-201ENST00000308508 CRLF2Q9HC73 371 aa12.73□□□□□ -0.37
CSPG4-201ENST00000308508 CA14Q9ULX7 337 aa12.73□□□□□ -0.37
CSPG4-201ENST00000308508 PIAS3Q9Y6X2 628 aa12.73□□□□□ -0.37
CSPG4-201ENST00000308508 U3KQ87 197 aa12.73□□□□□ -0.37
CSPG4-201ENST00000308508 SSR4P51571 173 aa12.73□□□□□ -0.37
CSPG4-201ENST00000308508 OR5I1Q13606 314 aa12.73□□□□□ -0.37
CSPG4-201ENST00000308508 RXFP4Q8TDU9 374 aa12.73□□□□□ -0.37
CSPG4-201ENST00000308508 PIGTQ969N2 578 aa12.73□□□□□ -0.37
CSPG4-201ENST00000308508 ADIPOR1Q96A54 375 aa12.73□□□□□ -0.37
CSPG4-201ENST00000308508 SLC5A10A0PJK1 596 aa12.73□□□□□ -0.37
CSPG4-201ENST00000308508 GPR31O00270 319 aa12.73□□□□□ -0.37
CSPG4-201ENST00000308508 DOK2O60496 412 aa12.73□□□□□ -0.37
CSPG4-201ENST00000308508 TPOP07202 933 aa12.73□□□□□ -0.37
CSPG4-201ENST00000308508 GDF2Q9UK05 429 aaPredicted RBP12.73□□□□□ -0.37
CSPG4-201ENST00000308508 ABCD4O14678 606 aa12.73□□□□□ -0.37
CSPG4-201ENST00000308508 SMIM17P0DL12 118 aa12.73□□□□□ -0.37
CSPG4-201ENST00000308508 HNRNPA1L2Q32P51 320 aaKnown RBP12.73□□□□□ -0.37
CSPG4-201ENST00000308508 GABRG1Q8N1C3 465 aa12.73□□□□□ -0.37
CSPG4-201ENST00000308508 H1FXQ92522 213 aaKnown RBP12.73□□□□□ -0.37
CSPG4-201ENST00000308508 FBXW5Q969U6 566 aa12.73□□□□□ -0.37
CSPG4-201ENST00000308508 CDCA4Q9BXL8 241 aa12.73□□□□□ -0.37
CSPG4-201ENST00000308508 HS3ST1O14792 307 aa12.73□□□□□ -0.37
CSPG4-201ENST00000308508 HSBP1O75506 76 aa12.73□□□□□ -0.37
CSPG4-201ENST00000308508 HOXC13P31276 330 aa12.73□□□□□ -0.37
CSPG4-201ENST00000308508 ADRA1AP35348 466 aa12.73□□□□□ -0.37
CSPG4-201ENST00000308508 SAXO2Q658L1 398 aa12.73□□□□□ -0.37
CSPG4-201ENST00000308508 DHRS11Q6UWP2 260 aa12.73□□□□□ -0.37
CSPG4-201ENST00000308508 PPP1R3BQ86XI6 285 aa12.73□□□□□ -0.37
CSPG4-201ENST00000308508 SLC38A9Q8NBW4 561 aa12.73□□□□□ -0.37
CSPG4-201ENST00000308508 TXNRD2Q9NNW7 524 aa12.73□□□□□ -0.37
CSPG4-201ENST00000308508 CGGBP1Q9UFW8 167 aaPredicted RBP12.73□□□□□ -0.37
CSPG4-201ENST00000308508 ATXN1LP0C7T5 689 aaKnown RBP12.72□□□□□ -0.37
CSPG4-201ENST00000308508 COX20Q5RI15 118 aa12.72□□□□□ -0.37
CSPG4-201ENST00000308508 PLA2G12AQ9BZM1 189 aa12.72□□□□□ -0.37
CSPG4-201ENST00000308508 TRAPPC1Q9Y5R8 145 aa12.72□□□□□ -0.37
CSPG4-201ENST00000308508 ARPC3O15145 178 aa12.72□□□□□ -0.37
CSPG4-201ENST00000308508 FABP4P15090 132 aa12.72□□□□□ -0.37
CSPG4-201ENST00000308508 PSMB5P28074 263 aa12.72□□□□□ -0.37
CSPG4-201ENST00000308508 OTUD1Q5VV17 481 aaPredicted RBP12.72□□□□□ -0.37
CSPG4-201ENST00000308508 TOMM20LQ6UXN7 152 aa12.72□□□□□ -0.37
CSPG4-201ENST00000308508 UBAC2Q8NBM4 344 aa12.72□□□□□ -0.37
CSPG4-201ENST00000308508 LCORQ96JN0 433 aaPredicted RBP12.72□□□□□ -0.37
CSPG4-201ENST00000308508 ATF6BQ99941 703 aa12.72□□□□□ -0.37
CSPG4-201ENST00000308508 PAAF1Q9BRP4 392 aa12.72□□□□□ -0.37
CSPG4-201ENST00000308508 LAMP3Q9UQV4 416 aa12.72□□□□□ -0.37
CSPG4-201ENST00000308508 NUP214P35658 2090 aaPredicted RBP12.72□□□□□ -0.37
CSPG4-201ENST00000308508 H0YGG7 62 aa12.72□□□□□ -0.37
CSPG4-201ENST00000308508 SMAD6O43541 496 aaKnown RBP12.72□□□□□ -0.37
CSPG4-201ENST00000308508 WNT11O96014 354 aa12.72□□□□□ -0.37
CSPG4-201ENST00000308508 NQO2P16083 231 aa12.72□□□□□ -0.37
CSPG4-201ENST00000308508 ERVFC1-1P60608 527 aa12.72□□□□□ -0.37
CSPG4-201ENST00000308508 VWA1Q6PCB0 445 aa12.72□□□□□ -0.37
CSPG4-201ENST00000308508 RASD2Q96D21 266 aa12.72□□□□□ -0.37
CSPG4-201ENST00000308508 SPAG17Q6Q759 2223 aa12.72□□□□□ -0.37
CSPG4-201ENST00000308508 SELEP16581 610 aa12.72□□□□□ -0.37
CSPG4-201ENST00000308508 MLF1P58340 268 aa12.72□□□□□ -0.37
CSPG4-201ENST00000308508 RTP2Q5QGT7 225 aa12.72□□□□□ -0.37
CSPG4-201ENST00000308508 MBOAT4Q96T53 435 aa12.72□□□□□ -0.37
CSPG4-201ENST00000308508 STAG3L2P0CL84 134 aa12.72□□□□□ -0.37
CSPG4-201ENST00000308508 SLC25A6P12236 298 aa12.72□□□□□ -0.37
CSPG4-201ENST00000308508 ACKR1Q16570 336 aa12.72□□□□□ -0.37
CSPG4-201ENST00000308508 MED25Q71SY5 747 aa12.72□□□□□ -0.37
CSPG4-201ENST00000308508 BCDIN3DQ7Z5W3 292 aaKnown RBP12.72□□□□□ -0.37
CSPG4-201ENST00000308508 FAM71CQ8NEG0 241 aa12.72□□□□□ -0.37
CSPG4-201ENST00000308508 FBP1P09467 338 aa12.72□□□□□ -0.37
CSPG4-201ENST00000308508 OR4E1P0C645 316 aa12.72□□□□□ -0.37
CSPG4-201ENST00000308508 SFTA3P0C7M3 94 aa12.72□□□□□ -0.37
CSPG4-201ENST00000308508 DGCR2P98153 550 aa12.72□□□□□ -0.37
CSPG4-201ENST00000308508 EMC4Q5J8M3 183 aa12.72□□□□□ -0.37
CSPG4-201ENST00000308508 GPX8Q8TED1 209 aa12.72□□□□□ -0.37
CSPG4-201ENST00000308508 BANF2Q9H503 90 aa12.72□□□□□ -0.37
CSPG4-201ENST00000308508 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.71□□□□□ -0.37
CSPG4-201ENST00000308508 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.71□□□□□ -0.37
CSPG4-201ENST00000308508 GFRA2O00451 464 aa12.71□□□□□ -0.37
CSPG4-201ENST00000308508 IGHEP01854 428 aa12.71□□□□□ -0.37
CSPG4-201ENST00000308508 RFC3P40938 356 aa12.71□□□□□ -0.37
CSPG4-201ENST00000308508 ERHP84090 104 aaKnown RBP12.71□□□□□ -0.37
CSPG4-201ENST00000308508 ZNF468Q5VIY5 522 aaPredicted RBP12.71□□□□□ -0.37
CSPG4-201ENST00000308508 FA2HQ7L5A8 372 aa12.71□□□□□ -0.37
CSPG4-201ENST00000308508 CLEC14AQ86T13 490 aa12.71□□□□□ -0.37
CSPG4-201ENST00000308508 OR10G3Q8NGC4 313 aa12.71□□□□□ -0.37
CSPG4-201ENST00000308508 NCBP2LA6PVI3 153 aaKnown RBP12.71□□□□□ -0.37
CSPG4-201ENST00000308508 CTSCP53634 463 aa12.71□□□□□ -0.37
CSPG4-201ENST00000308508 TEKQ02763 1124 aa12.71□□□□□ -0.37
CSPG4-201ENST00000308508 DEFB133Q30KQ1 61 aa12.71□□□□□ -0.37
CSPG4-201ENST00000308508 C20orf27Q9GZN8 174 aa12.71□□□□□ -0.37
CSPG4-201ENST00000308508 TAS2R4Q9NYW5 299 aa12.71□□□□□ -0.37
CSPG4-201ENST00000308508 FKBP2P26885 142 aaKnown RBP12.71□□□□□ -0.37
CSPG4-201ENST00000308508 L3MBTL4Q8NA19 623 aa12.71□□□□□ -0.37
CSPG4-201ENST00000308508 ERV3-1Q14264 604 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms