RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 CD2P06729 351 aa17.92■□□□□ 0.46
VPS53-201ENST00000291074 CELA2AP08217 269 aa17.92■□□□□ 0.46
VPS53-201ENST00000291074 CFPP27918 469 aa17.92■□□□□ 0.46
VPS53-201ENST00000291074 GLYATL3Q5SZD4 288 aa17.92■□□□□ 0.46
VPS53-201ENST00000291074 PMS2CLQ68D20 193 aa17.92■□□□□ 0.46
VPS53-201ENST00000291074 OR4C16Q8NGL9 310 aa17.92■□□□□ 0.46
VPS53-201ENST00000291074 SLC25A28Q96A46 364 aa17.92■□□□□ 0.46
VPS53-201ENST00000291074 ATG5Q9H1Y0 275 aa17.92■□□□□ 0.46
VPS53-201ENST00000291074 CKLFQ9UBR5 152 aa17.92■□□□□ 0.46
VPS53-201ENST00000291074 PILRBQ9UKJ0 227 aa17.92■□□□□ 0.46
VPS53-201ENST00000291074 MRPS18BQ9Y676 258 aaKnown RBP17.92■□□□□ 0.46
VPS53-201ENST00000291074 WDFY4Q6ZS81 3184 aa17.92■□□□□ 0.46
VPS53-201ENST00000291074 A0A1B0GUH1 482 aa17.91■□□□□ 0.46
VPS53-201ENST00000291074 TMEM269A0A1B0GVZ9 245 aa17.91■□□□□ 0.46
VPS53-201ENST00000291074 P2RY10O00398 339 aa17.91■□□□□ 0.46
VPS53-201ENST00000291074 TGM6O95932 706 aa17.91■□□□□ 0.46
VPS53-201ENST00000291074 CFIP05156 583 aa17.91■□□□□ 0.46
VPS53-201ENST00000291074 ZNF28P17035 718 aa17.91■□□□□ 0.46
VPS53-201ENST00000291074 IGFBP3P17936 291 aaPredicted RBP17.91■□□□□ 0.46
VPS53-201ENST00000291074 TMEM205Q6UW68 189 aa17.91■□□□□ 0.46
VPS53-201ENST00000291074 NLRC3Q7RTR2 1065 aa17.91■□□□□ 0.46
VPS53-201ENST00000291074 MAFAQ8NHW3 353 aaPredicted RBP17.91■□□□□ 0.46
VPS53-201ENST00000291074 C15orf40Q8WUR7 153 aa17.91■□□□□ 0.46
VPS53-201ENST00000291074 C11orf40Q8WZ69 217 aa17.91■□□□□ 0.46
VPS53-201ENST00000291074 CHIAQ9BZP6 476 aa17.91■□□□□ 0.46
VPS53-201ENST00000291074 ZNF436Q9C0F3 470 aaPredicted RBP17.91■□□□□ 0.46
VPS53-201ENST00000291074 GAREM1Q9H706 876 aa17.91■□□□□ 0.46
VPS53-201ENST00000291074 DIABLOQ9NR28 239 aa17.91■□□□□ 0.46
VPS53-201ENST00000291074 HHLA2Q9UM44 414 aa17.91■□□□□ 0.46
VPS53-201ENST00000291074 G3V3Q6 166 aa17.91■□□□□ 0.46
VPS53-201ENST00000291074 PDGFBP01127 241 aaPredicted RBP17.91■□□□□ 0.46
VPS53-201ENST00000291074 NAGAP17050 411 aa17.91■□□□□ 0.46
VPS53-201ENST00000291074 DLX5P56178 289 aa17.91■□□□□ 0.46
VPS53-201ENST00000291074 PCK2Q16822 640 aa17.91■□□□□ 0.46
VPS53-201ENST00000291074 PRAMEF20Q5VT98 475 aa17.91■□□□□ 0.46
VPS53-201ENST00000291074 GPR137Q96N19 417 aa17.91■□□□□ 0.46
VPS53-201ENST00000291074 RASL10BQ96S79 203 aa17.91■□□□□ 0.46
VPS53-201ENST00000291074 CMKLR1Q99788 373 aa17.91■□□□□ 0.46
VPS53-201ENST00000291074 TNFRSF10AO00220 468 aa17.9■□□□□ 0.46
VPS53-201ENST00000291074 ICMTO60725 284 aa17.9■□□□□ 0.46
VPS53-201ENST00000291074 ALX3O95076 343 aa17.9■□□□□ 0.46
VPS53-201ENST00000291074 NDUFB6O95139 128 aa17.9■□□□□ 0.46
VPS53-201ENST00000291074 DNASE1P24855 282 aa17.9■□□□□ 0.46
VPS53-201ENST00000291074 DNASE1L1P49184 302 aa17.9■□□□□ 0.46
VPS53-201ENST00000291074 ANGPT1Q15389 498 aa17.9■□□□□ 0.46
VPS53-201ENST00000291074 METTL11BQ5VVY1 283 aa17.9■□□□□ 0.46
VPS53-201ENST00000291074 GLDNQ6ZMI3 551 aaPredicted RBP17.9■□□□□ 0.46
VPS53-201ENST00000291074 OR2T35Q8NGX2 323 aa17.9■□□□□ 0.46
VPS53-201ENST00000291074 MRGPRX4Q96LA9 322 aa17.9■□□□□ 0.46
VPS53-201ENST00000291074 CDX2Q99626 313 aaPredicted RBP17.9■□□□□ 0.46
VPS53-201ENST00000291074 ZNF69Q9UC07 566 aa17.9■□□□□ 0.46
VPS53-201ENST00000291074 B3GALT5Q9Y2C3 310 aa17.9■□□□□ 0.46
VPS53-201ENST00000291074 CNTRLQ7Z7A1 2325 aa17.9■□□□□ 0.46
VPS53-201ENST00000291074 A0A1B0GVI7 797 aa17.9■□□□□ 0.46
VPS53-201ENST00000291074 A0A1W2PQ72 361 aa17.9■□□□□ 0.46
VPS53-201ENST00000291074 ZNF814B7Z6K7 855 aa17.9■□□□□ 0.46
VPS53-201ENST00000291074 PYCARD-AS1I3L0S3 204 aa17.9■□□□□ 0.46
VPS53-201ENST00000291074 PRAF2O60831 178 aa17.9■□□□□ 0.46
VPS53-201ENST00000291074 H2BFMP0C1H6 154 aa17.9■□□□□ 0.46
VPS53-201ENST00000291074 KLK2P20151 261 aa17.9■□□□□ 0.46
VPS53-201ENST00000291074 HTR2CP28335 458 aa17.9■□□□□ 0.46
VPS53-201ENST00000291074 SSTR2P30874 369 aa17.9■□□□□ 0.46
VPS53-201ENST00000291074 GLT8D1Q68CQ7 371 aa17.9■□□□□ 0.46
VPS53-201ENST00000291074 OR10K2Q6IF99 312 aa17.9■□□□□ 0.46
VPS53-201ENST00000291074 SEZ6L2Q6UXD5 910 aa17.9■□□□□ 0.46
VPS53-201ENST00000291074 GPAT4Q86UL3 456 aa17.9■□□□□ 0.46
VPS53-201ENST00000291074 OR8H1Q8NGG4 311 aa17.9■□□□□ 0.46
VPS53-201ENST00000291074 OR52B4Q8NGK2 314 aa17.9■□□□□ 0.46
VPS53-201ENST00000291074 DEFB126Q9BYW3 111 aa17.9■□□□□ 0.46
VPS53-201ENST00000291074 POTEKPQ9BYX7 375 aa17.9■□□□□ 0.46
VPS53-201ENST00000291074 CDCP1Q9H5V8 836 aa17.9■□□□□ 0.46
VPS53-201ENST00000291074 CA10Q9NS85 328 aa17.9■□□□□ 0.46
VPS53-201ENST00000291074 ETV2O00321 342 aaPredicted RBP17.89■□□□□ 0.45
VPS53-201ENST00000291074 NAT1P18440 290 aa17.89■□□□□ 0.45
VPS53-201ENST00000291074 JAGN1Q8N5M9 183 aa17.89■□□□□ 0.45
VPS53-201ENST00000291074 IFI44Q8TCB0 444 aa17.89■□□□□ 0.45
VPS53-201ENST00000291074 DVL3Q92997 716 aaPredicted RBP17.89■□□□□ 0.45
VPS53-201ENST00000291074 PATE3B3GLJ2 98 aa17.89■□□□□ 0.45
VPS53-201ENST00000291074 FSTP19883 344 aa17.89■□□□□ 0.45
VPS53-201ENST00000291074 SFTPDP35247 375 aa17.89■□□□□ 0.45
VPS53-201ENST00000291074 MRPL14Q6P1L8 145 aaKnown RBP17.89■□□□□ 0.45
VPS53-201ENST00000291074 HIST2H2ABQ8IUE6 130 aaPredicted RBP17.89■□□□□ 0.45
VPS53-201ENST00000291074 OR2M3Q8NG83 312 aa17.89■□□□□ 0.45
VPS53-201ENST00000291074 OR8S1Q8NH09 359 aa17.89■□□□□ 0.45
VPS53-201ENST00000291074 SPACA9Q96E40 222 aaPredicted RBP17.89■□□□□ 0.45
VPS53-201ENST00000291074 OR5B2Q96R09 309 aa17.89■□□□□ 0.45
VPS53-201ENST00000291074 NPDC1Q9NQX5 325 aaPredicted RBP17.89■□□□□ 0.45
VPS53-201ENST00000291074 NPTNQ9Y639 398 aa17.89■□□□□ 0.45
VPS53-201ENST00000291074 A0A1W2PPL8 197 aa17.88■□□□□ 0.45
VPS53-201ENST00000291074 NPIPB13A6NJU9 1138 aa17.88■□□□□ 0.45
VPS53-201ENST00000291074 NPIPB4C9JG80 1138 aa17.88■□□□□ 0.45
VPS53-201ENST00000291074 RAMP1O60894 148 aa17.88■□□□□ 0.45
VPS53-201ENST00000291074 AQP8O94778 261 aa17.88■□□□□ 0.45
VPS53-201ENST00000291074 GTF2F2P13984 249 aa17.88■□□□□ 0.45
VPS53-201ENST00000291074 ACHEP22303 614 aa17.88■□□□□ 0.45
VPS53-201ENST00000291074 SNTA1Q13424 505 aa17.88■□□□□ 0.45
VPS53-201ENST00000291074 CSRP2Q16527 193 aa17.88■□□□□ 0.45
VPS53-201ENST00000291074 LGALSLQ3ZCW2 172 aaPredicted RBP17.88■□□□□ 0.45
VPS53-201ENST00000291074 CARD17Q5XLA6 110 aa17.88■□□□□ 0.45
VPS53-201ENST00000291074 SLC22A8Q8TCC7 542 aa17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms