RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 HPP00738 406 aa12.82□□□□□ -0.36
CCDC88A-201ENST00000263630 G6PCP35575 357 aa12.82□□□□□ -0.36
CCDC88A-201ENST00000263630 PCBP4P57723 403 aaKnown RBP12.82□□□□□ -0.36
CCDC88A-201ENST00000263630 ANGPTL5Q86XS5 388 aa12.82□□□□□ -0.36
CCDC88A-201ENST00000263630 PQLC3Q8N755 202 aa12.82□□□□□ -0.36
CCDC88A-201ENST00000263630 LRFN3Q9BTN0 628 aa12.82□□□□□ -0.36
CCDC88A-201ENST00000263630 APOOQ9BUR5 198 aa12.82□□□□□ -0.36
CCDC88A-201ENST00000263630 AMDHD2Q9Y303 409 aa12.82□□□□□ -0.36
CCDC88A-201ENST00000263630 LY86O95711 162 aa12.82□□□□□ -0.36
CCDC88A-201ENST00000263630 GPR75O95800 540 aa12.82□□□□□ -0.36
CCDC88A-201ENST00000263630 TNFRSF17Q02223 184 aa12.82□□□□□ -0.36
CCDC88A-201ENST00000263630 ZNF141Q15928 474 aa12.82□□□□□ -0.36
CCDC88A-201ENST00000263630 ZNF528Q3MIS6 628 aa12.82□□□□□ -0.36
CCDC88A-201ENST00000263630 OTUD1Q5VV17 481 aaPredicted RBP12.82□□□□□ -0.36
CCDC88A-201ENST00000263630 HIST1H1TP22492 207 aaPredicted RBP12.82□□□□□ -0.36
CCDC88A-201ENST00000263630 SOWAHCQ53LP3 525 aaPredicted RBP12.82□□□□□ -0.36
CCDC88A-201ENST00000263630 TXNRD3NBQ6F5E7 133 aa12.82□□□□□ -0.36
CCDC88A-201ENST00000263630 MUC15Q8N387 334 aa12.82□□□□□ -0.36
CCDC88A-201ENST00000263630 TIMM29Q9BSF4 260 aa12.82□□□□□ -0.36
CCDC88A-201ENST00000263630 FCGR2CP31995 323 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 ZNF140P52738 457 aaPredicted RBP12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 KCNJ10P78508 379 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 UQCC3Q6UW78 93 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 LCN15Q6UWW0 184 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 OR5AR1Q8NGP9 310 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 GRAMD2BQ96HH9 432 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 NTMT1Q9BV86 223 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 PHRF1Q9P1Y6 1649 aaKnown RBP12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 ARID1AO14497 2285 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 UBR1Q8IWV7 1749 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 DUS4LO95620 317 aaKnown RBP12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 CFHP08603 1231 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 IER5LQ5T953 404 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 CYHR1Q6ZMK1 362 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 VGLL2Q8N8G2 317 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 DDOQ99489 341 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 PSENENQ9NZ42 101 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 FMN2Q9NZ56 1722 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 TMEM218A2RU14 115 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 POU3F3P20264 500 aaPredicted RBP12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 CD200P41217 278 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 IGSF21Q96ID5 467 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 NDUFB11Q9NX14 153 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 A0A0A6YYC8 382 aaPredicted RBP12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 H0YIV9 168 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 I3L1I5 382 aaPredicted RBP12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 FAM87AP0C7U9 286 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 EXT1Q16394 746 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 PIWIL3Q7Z3Z3 882 aaKnown RBP12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 OR4F17Q8NGA8 305 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 GPR150Q8NGU9 434 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 RD3LP0DJH9 198 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 RPA2P15927 270 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 P2RY2P41231 377 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 DLX1P56177 255 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 PRAMEF20Q5VT98 475 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 WDR74Q6RFH5 385 aaPredicted RBP12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 FYTTD1Q96QD9 318 aaKnown RBP12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 PEBP4Q96S96 227 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 CDCA3Q99618 268 aaPredicted RBP12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 ABCD3P28288 659 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 ZP2Q05996 745 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 GLIPR1L1Q6UWM5 242 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 ERGIC1Q969X5 290 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 LCORQ96JN0 433 aaPredicted RBP12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 OR4C12Q96R67 309 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 TRABD2BA6NFA1 517 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 M0QYG6 137 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 GPR31O00270 319 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 AIFM1O95831 613 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 CSF2RAP15509 400 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 PSMB6P28072 239 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 RBP2P50120 134 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 ISCA2Q86U28 154 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 VRK2Q86Y07 508 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 WDR31Q8NA23 367 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 OR4C16Q8NGL9 310 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 PIAS3Q9Y6X2 628 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 IGLV3-22A0A075B6J6 115 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 SLC22A20A6NK97 555 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 FRS3O43559 492 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 GALR1P47211 349 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 TAZQ16635 292 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 DOLPP1Q86YN1 238 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 TMEM147Q9BVK8 224 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 GSX2Q9BZM3 304 aa12.81□□□□□ -0.36
CCDC88A-201ENST00000263630 EXOSC7Q15024 291 aaKnown RBP12.8□□□□□ -0.36
CCDC88A-201ENST00000263630 SEC11CQ9BY50 192 aa12.8□□□□□ -0.36
CCDC88A-201ENST00000263630 TWSG1Q9GZX9 223 aa12.8□□□□□ -0.36
CCDC88A-201ENST00000263630 FKBP11Q9NYL4 201 aa12.8□□□□□ -0.36
CCDC88A-201ENST00000263630 HSPB8Q9UJY1 196 aa12.8□□□□□ -0.36
CCDC88A-201ENST00000263630 I6L893 689 aaPredicted RBP12.8□□□□□ -0.36
CCDC88A-201ENST00000263630 NEURL1O76050 574 aa12.8□□□□□ -0.36
CCDC88A-201ENST00000263630 CCR7P32248 378 aa12.8□□□□□ -0.36
CCDC88A-201ENST00000263630 AGBL5Q8NDL9 886 aa12.8□□□□□ -0.36
CCDC88A-201ENST00000263630 ST8SIA4Q92187 359 aa12.8□□□□□ -0.36
CCDC88A-201ENST00000263630 XYLT2Q9H1B5 865 aa12.8□□□□□ -0.36
CCDC88A-201ENST00000263630 P2RY12Q9H244 342 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms