RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 LRFN4Q6PJG9 635 aa16.8■□□□□ 0.28
CPSF3-201ENST00000238112 GALNT16Q8N428 558 aa16.8■□□□□ 0.28
CPSF3-201ENST00000238112 OR51A2Q8NGJ7 313 aa16.8■□□□□ 0.28
CPSF3-201ENST00000238112 OR1N1Q8NGS0 311 aa16.8■□□□□ 0.28
CPSF3-201ENST00000238112 STK35Q8TDR2 534 aa16.8■□□□□ 0.28
CPSF3-201ENST00000238112 TINAGL1Q9GZM7 467 aaPredicted RBP16.8■□□□□ 0.28
CPSF3-201ENST00000238112 ZNF304Q9HCX3 659 aa16.8■□□□□ 0.28
CPSF3-201ENST00000238112 LOC107986453A0A1B0GWG9 222 aa16.79■□□□□ 0.28
CPSF3-201ENST00000238112 ZNF736B4DX44 427 aaPredicted RBP16.79■□□□□ 0.28
CPSF3-201ENST00000238112 TPD52L2O43399 206 aaKnown RBP16.79■□□□□ 0.28
CPSF3-201ENST00000238112 PRKACBP22694 351 aa16.79■□□□□ 0.28
CPSF3-201ENST00000238112 HSD11B2P80365 405 aa16.79■□□□□ 0.28
CPSF3-201ENST00000238112 PMPCAQ10713 525 aa16.79■□□□□ 0.28
CPSF3-201ENST00000238112 RAB33BQ9H082 229 aa16.79■□□□□ 0.28
CPSF3-201ENST00000238112 MYEF2Q9P2K5 600 aaKnown RBP16.79■□□□□ 0.28
CPSF3-201ENST00000238112 A0A0A6YYH2 397 aa16.79■□□□□ 0.28
CPSF3-201ENST00000238112 A6NJ64 397 aa16.79■□□□□ 0.28
CPSF3-201ENST00000238112 RFPL4AA6NLU0 287 aa16.79■□□□□ 0.28
CPSF3-201ENST00000238112 C2CD4DB7Z1M9 353 aa16.79■□□□□ 0.28
CPSF3-201ENST00000238112 RFPL4AL1F8VTS6 287 aa16.79■□□□□ 0.28
CPSF3-201ENST00000238112 DOK2O60496 412 aa16.79■□□□□ 0.28
CPSF3-201ENST00000238112 AQP8O94778 261 aa16.79■□□□□ 0.28
CPSF3-201ENST00000238112 ACHEP22303 614 aa16.79■□□□□ 0.28
CPSF3-201ENST00000238112 LTBRP36941 435 aa16.79■□□□□ 0.28
CPSF3-201ENST00000238112 PXDC1Q5TGL8 231 aa16.79■□□□□ 0.28
CPSF3-201ENST00000238112 DNM1P34Q6PK57 102 aa16.79■□□□□ 0.28
CPSF3-201ENST00000238112 C5orf46Q6UWT4 87 aa16.79■□□□□ 0.28
CPSF3-201ENST00000238112 C17orf82Q86X59 251 aaPredicted RBP16.79■□□□□ 0.28
CPSF3-201ENST00000238112 KDM8Q8N371 416 aa16.79■□□□□ 0.28
CPSF3-201ENST00000238112 TSTD1Q8NFU3 115 aa16.79■□□□□ 0.28
CPSF3-201ENST00000238112 ZMAT3Q9HA38 289 aaKnown RBP16.79■□□□□ 0.28
CPSF3-201ENST00000238112 OR52A1Q9UKL2 312 aa16.79■□□□□ 0.28
CPSF3-201ENST00000238112 MKL2Q9ULH7 1088 aa16.79■□□□□ 0.28
CPSF3-201ENST00000238112 IGHV1OR15-9A0A0B4J2B8 117 aa16.78■□□□□ 0.28
CPSF3-201ENST00000238112 KRBOX1C9JBD0 128 aa16.78■□□□□ 0.28
CPSF3-201ENST00000238112 FADS1O60427 444 aa16.78■□□□□ 0.28
CPSF3-201ENST00000238112 HLA-DOBP13765 273 aa16.78■□□□□ 0.28
CPSF3-201ENST00000238112 GLULP15104 373 aa16.78■□□□□ 0.28
CPSF3-201ENST00000238112 SQSTM1Q13501 440 aa16.78■□□□□ 0.28
CPSF3-201ENST00000238112 C14orf28Q4W4Y0 310 aa16.78■□□□□ 0.28
CPSF3-201ENST00000238112 CLVS2Q5SYC1 327 aa16.78■□□□□ 0.28
CPSF3-201ENST00000238112 DCXRQ7Z4W1 244 aa16.78■□□□□ 0.28
CPSF3-201ENST00000238112 SLC51BQ86UW2 128 aa16.78■□□□□ 0.28
CPSF3-201ENST00000238112 PDZD9Q8IXQ8 264 aa16.78■□□□□ 0.28
CPSF3-201ENST00000238112 OR6K3Q8NGY3 331 aa16.78■□□□□ 0.28
CPSF3-201ENST00000238112 OR1L3Q8NH93 324 aa16.78■□□□□ 0.28
CPSF3-201ENST00000238112 FARSAQ9Y285 508 aaKnown RBP16.78■□□□□ 0.28
CPSF3-201ENST00000238112 A6NIZ1 184 aa16.78■□□□□ 0.28
CPSF3-201ENST00000238112 SDC3O75056 442 aa16.78■□□□□ 0.28
CPSF3-201ENST00000238112 SRSF10O75494 262 aaKnown RBP16.78■□□□□ 0.28
CPSF3-201ENST00000238112 SPDEFO95238 335 aa16.78■□□□□ 0.28
CPSF3-201ENST00000238112 CD27P26842 260 aa16.78■□□□□ 0.28
CPSF3-201ENST00000238112 ARRB1P49407 418 aaPredicted RBP16.78■□□□□ 0.28
CPSF3-201ENST00000238112 RAP1BP61224 184 aa16.78■□□□□ 0.28
CPSF3-201ENST00000238112 RAP1AP62834 184 aa16.78■□□□□ 0.28
CPSF3-201ENST00000238112 UBXN2BQ14CS0 331 aa16.78■□□□□ 0.28
CPSF3-201ENST00000238112 SCGB2B2Q4G0G5 96 aa16.78■□□□□ 0.28
CPSF3-201ENST00000238112 ZNF660Q6AZW8 331 aaPredicted RBP16.78■□□□□ 0.28
CPSF3-201ENST00000238112 ZNF704Q6ZNC4 412 aaPredicted RBP16.78■□□□□ 0.28
CPSF3-201ENST00000238112 BPIFB2Q8N4F0 458 aa16.78■□□□□ 0.28
CPSF3-201ENST00000238112 SMRP1Q8NCR6 262 aa16.78■□□□□ 0.28
CPSF3-201ENST00000238112 STEAP2Q8NFT2 490 aa16.78■□□□□ 0.28
CPSF3-201ENST00000238112 EDAQ92838 391 aa16.78■□□□□ 0.28
CPSF3-201ENST00000238112 DPYSL5Q9BPU6 564 aa16.78■□□□□ 0.28
CPSF3-201ENST00000238112 OR6C76A6NM76 312 aa16.77■□□□□ 0.28
CPSF3-201ENST00000238112 NPIPA5E9PKD4 350 aa16.77■□□□□ 0.28
CPSF3-201ENST00000238112 ZNF217O75362 1048 aa16.77■□□□□ 0.28
CPSF3-201ENST00000238112 ISG15P05161 165 aa16.77■□□□□ 0.28
CPSF3-201ENST00000238112 HOXD4P09016 255 aaPredicted RBP16.77■□□□□ 0.28
CPSF3-201ENST00000238112 C1orf189Q5VU69 101 aa16.77■□□□□ 0.28
CPSF3-201ENST00000238112 OR10K2Q6IF99 312 aa16.77■□□□□ 0.28
CPSF3-201ENST00000238112 SYT13Q7L8C5 426 aa16.77■□□□□ 0.28
CPSF3-201ENST00000238112 ZNF584Q8IVC4 421 aa16.77■□□□□ 0.28
CPSF3-201ENST00000238112 LINC00346Q8IVM7 164 aa16.77■□□□□ 0.28
CPSF3-201ENST00000238112 BEST3Q8N1M1 668 aa16.77■□□□□ 0.28
CPSF3-201ENST00000238112 NKAIN3Q8N8D7 197 aa16.77■□□□□ 0.28
CPSF3-201ENST00000238112 TMEM234Q8WY98 164 aa16.77■□□□□ 0.28
CPSF3-201ENST00000238112 B3GNT4Q9C0J1 378 aa16.77■□□□□ 0.28
CPSF3-201ENST00000238112 VN1R1Q9GZP7 353 aa16.77■□□□□ 0.28
CPSF3-201ENST00000238112 G6PC2Q9NQR9 355 aa16.77■□□□□ 0.28
CPSF3-201ENST00000238112 ZNF107Q9UII5 783 aaPredicted RBP16.77■□□□□ 0.28
CPSF3-201ENST00000238112 NPIPA1Q9UND3 350 aa16.77■□□□□ 0.28
CPSF3-201ENST00000238112 TMEM269A0A1B0GVZ9 245 aa16.76■□□□□ 0.27
CPSF3-201ENST00000238112 A0A1W2PR77 199 aa16.76■□□□□ 0.27
CPSF3-201ENST00000238112 A8MXK9 166 aa16.76■□□□□ 0.27
CPSF3-201ENST00000238112 LDLRAD4O15165 306 aa16.76■□□□□ 0.27
CPSF3-201ENST00000238112 NUDT21O43809 227 aaKnown RBP16.76■□□□□ 0.27
CPSF3-201ENST00000238112 ALOX12BO75342 701 aa16.76■□□□□ 0.27
CPSF3-201ENST00000238112 CD37P11049 281 aa16.76■□□□□ 0.27
CPSF3-201ENST00000238112 IL11P20809 199 aa16.76■□□□□ 0.27
CPSF3-201ENST00000238112 AGTR1P30556 359 aa16.76■□□□□ 0.27
CPSF3-201ENST00000238112 TUSC1Q2TAM9 212 aa16.76■□□□□ 0.27
CPSF3-201ENST00000238112 LY6G6FQ5SQ64 297 aa16.76■□□□□ 0.27
CPSF3-201ENST00000238112 ATPAF1Q5TC12 328 aaPredicted RBP16.76■□□□□ 0.27
CPSF3-201ENST00000238112 OVCH2Q7RTZ1 564 aa16.76■□□□□ 0.27
CPSF3-201ENST00000238112 ZNF441Q8N8Z8 693 aa16.76■□□□□ 0.27
CPSF3-201ENST00000238112 SLC26A10Q8NG04 563 aa16.76■□□□□ 0.27
CPSF3-201ENST00000238112 OR5M9Q8NGP3 310 aa16.76■□□□□ 0.27
CPSF3-201ENST00000238112 OR1J2Q8NGS2 313 aa16.76■□□□□ 0.27
CPSF3-201ENST00000238112 FBXL2Q9UKC9 423 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms