RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 PLXNA1Q9UIW2 1896 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 MRC1P22897 1456 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 H3BSH0 61 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 M0R082 166 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 ZNF264O43296 627 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 XRCC3O43542 346 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 EGFP01133 1207 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 NAT2P11245 290 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 NME1P15531 152 aaKnown RBP2.57□□□□□ -2
SCN1A-219ENST00000641575 ZNF26P17031 533 aaPredicted RBP2.57□□□□□ -2
SCN1A-219ENST00000641575 BCL6P41182 706 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 SLC6A12P48065 614 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 HADHBP55084 474 aaKnown RBP2.57□□□□□ -2
SCN1A-219ENST00000641575 ZNF280AP59817 542 aaPredicted RBP2.57□□□□□ -2
SCN1A-219ENST00000641575 SEC61A1P61619 476 aaKnown RBP2.57□□□□□ -2
SCN1A-219ENST00000641575 UBE2G1P62253 170 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 EBPQ15125 230 aaKnown RBP2.57□□□□□ -2
SCN1A-219ENST00000641575 CPSF6Q16630 551 aaKnown RBP eCLIP2.57□□□□□ -2
SCN1A-219ENST00000641575 COL5A1-AS1Q5SY13 56 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 AWAT2Q6E213 333 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 SLC39A5Q6ZMH5 540 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 SPATC1Q76KD6 591 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 TMPRSS12Q86WS5 348 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 OR51Q1Q8NH59 317 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 LILRB1Q8NHL6 650 aaPredicted RBP2.57□□□□□ -2
SCN1A-219ENST00000641575 ZC3HAV1LQ96H79 300 aaKnown RBP2.57□□□□□ -2
SCN1A-219ENST00000641575 ZNF668Q96K58 619 aaPredicted RBP2.57□□□□□ -2
SCN1A-219ENST00000641575 LRFN3Q9BTN0 628 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 TPPP3Q9BW30 176 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 B3GNT5Q9BYG0 378 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 LINC00597Q9H2U6 94 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 SUV39H2Q9H5I1 410 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 RPF2Q9H7B2 306 aaKnown RBP2.57□□□□□ -2
SCN1A-219ENST00000641575 METRNQ9UJH8 293 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 FOXJ3Q9UPW0 622 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 B3GNT3Q9Y2A9 372 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 MEGF6O75095 1541 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 SERPINE3A8MV23 424 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 PRRT4C9JH25 899 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 F5H5K5 113 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 P2RX6O15547 441 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 ASGR2P07307 311 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 SULT1A3P0DMM9 295 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 SULT1A4P0DMN0 295 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 CD8BP10966 210 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 FOLR1P15328 257 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 CEBPBP17676 345 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 FBLN1P23142 703 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 MYF6P23409 242 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 ACAA2P42765 397 aaKnown RBP2.57□□□□□ -2
SCN1A-219ENST00000641575 PSMB3P49720 205 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 C21orf58P58505 322 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 GUCA2AQ02747 115 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 SEMA3BQ13214 749 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 MLF2Q15773 248 aaPredicted RBP2.57□□□□□ -2
SCN1A-219ENST00000641575 HAGHQ16775 308 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 ADPRMQ3LIE5 342 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 SEZ6Q53EL9 994 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 AMMECR1LQ6DCA0 310 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 CDC42EP5Q6NZY7 148 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 LDB1Q86U70 411 aaPredicted RBP2.57□□□□□ -2
SCN1A-219ENST00000641575 CMTM8Q8IZV2 173 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 LKAAEAR1Q8TD35 194 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 MARC2Q969Z3 335 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 LOXL4Q96JB6 756 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 SLC35E1Q96K37 410 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 FAAP24Q9BTP7 215 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 RSRP1Q9BUV0 290 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 WDR18Q9BV38 432 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 COL25A1Q9BXS0 654 aaPredicted RBP2.57□□□□□ -2
SCN1A-219ENST00000641575 ZNF696Q9H7X3 374 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 SYNPO2LQ9H987 977 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 ZNF331Q9NQX6 463 aaPredicted RBP2.57□□□□□ -2
SCN1A-219ENST00000641575 PATJQ8NI35 1801 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 TMEM221A6NGB7 291 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 ACOD1A6NK06 481 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 ANKRD63C9JTQ0 380 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 M0R296 226 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 POLR2IP36954 125 aaKnown RBP2.57□□□□□ -2
SCN1A-219ENST00000641575 COMPP49747 757 aaPredicted RBP2.57□□□□□ -2
SCN1A-219ENST00000641575 DIO1P49895 249 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 SERF2P84101 59 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 IL10RBQ08334 325 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 SKP2Q13309 424 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 ZXDCQ2QGD7 858 aaPredicted RBP2.57□□□□□ -2
SCN1A-219ENST00000641575 GDPGP1Q6ZNW5 385 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 ADPRHL1Q8NDY3 354 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 OR1S2Q8NGQ3 325 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 OR9I1Q8NGQ6 314 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 OR5K2Q8NHB8 316 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 GPR119Q8TDV5 335 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 TMEM190Q8WZ59 177 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 SLC22A12Q96S37 553 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 NKX2-4Q9H2Z4 354 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 USP22Q9UPT9 525 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 TECPR2O15040 1411 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 DLEC1Q9Y238 1755 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 OR52A4PA6NMU1 304 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 UPK3BL1B0FP48 263 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 UPK3BL2E5RIL1 263 aa2.57□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms