RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 CLRN1P58418 232 aa8.61□□□□□ -1.03
CLN3-261ENST00000637686 UBE2NP61088 152 aaKnown RBP8.61□□□□□ -1.03
CLN3-261ENST00000637686 TUBA1BP68363 451 aa8.61□□□□□ -1.03
CLN3-261ENST00000637686 TUBA4AP68366 448 aa8.61□□□□□ -1.03
CLN3-261ENST00000637686 RAB40BQ12829 278 aa8.61□□□□□ -1.03
CLN3-261ENST00000637686 HIST3H3Q16695 136 aa8.61□□□□□ -1.03
CLN3-261ENST00000637686 KLHL22Q53GT1 634 aa8.61□□□□□ -1.03
CLN3-261ENST00000637686 THEM4Q5T1C6 240 aa8.61□□□□□ -1.03
CLN3-261ENST00000637686 SLC35F1Q5T1Q4 408 aa8.61□□□□□ -1.03
CLN3-261ENST00000637686 LEG1Q6P5S2 330 aa8.61□□□□□ -1.03
CLN3-261ENST00000637686 LRFN4Q6PJG9 635 aa8.61□□□□□ -1.03
CLN3-261ENST00000637686 KLHL24Q6TFL4 600 aa8.61□□□□□ -1.03
CLN3-261ENST00000637686 PAMR1Q6UXH9 720 aa8.61□□□□□ -1.03
CLN3-261ENST00000637686 ZNF704Q6ZNC4 412 aaPredicted RBP8.61□□□□□ -1.03
CLN3-261ENST00000637686 TUBA1AQ71U36 451 aa8.61□□□□□ -1.03
CLN3-261ENST00000637686 MEPCEQ7L2J0 689 aaKnown RBP8.61□□□□□ -1.03
CLN3-261ENST00000637686 CPOQ8IVL8 374 aa8.61□□□□□ -1.03
CLN3-261ENST00000637686 ZNF786Q8N393 782 aa8.61□□□□□ -1.03
CLN3-261ENST00000637686 SYT14Q8NB59 555 aa8.61□□□□□ -1.03
CLN3-261ENST00000637686 NOXO1Q8NFA2 376 aa8.61□□□□□ -1.03
CLN3-261ENST00000637686 OR4K13Q8NH42 304 aa8.61□□□□□ -1.03
CLN3-261ENST00000637686 CNIH3Q8TBE1 160 aa8.61□□□□□ -1.03
CLN3-261ENST00000637686 PTP4A1Q93096 173 aa8.61□□□□□ -1.03
CLN3-261ENST00000637686 UBE2FQ969M7 185 aa8.61□□□□□ -1.03
CLN3-261ENST00000637686 RASD2Q96D21 266 aa8.61□□□□□ -1.03
CLN3-261ENST00000637686 NMD3Q96D46 503 aaKnown RBP8.61□□□□□ -1.03
CLN3-261ENST00000637686 BOD1Q96IK1 185 aa8.61□□□□□ -1.03
CLN3-261ENST00000637686 SIGLEC11Q96RL6 698 aa8.61□□□□□ -1.03
CLN3-261ENST00000637686 MYCBPQ99417 103 aaPredicted RBP8.61□□□□□ -1.03
CLN3-261ENST00000637686 TMEM204Q9BSN7 226 aa8.61□□□□□ -1.03
CLN3-261ENST00000637686 NELFAQ9H3P2 528 aa8.61□□□□□ -1.03
CLN3-261ENST00000637686 GLTPQ9NZD2 209 aa8.61□□□□□ -1.03
CLN3-261ENST00000637686 RNF115Q9Y4L5 304 aa8.61□□□□□ -1.03
CLN3-261ENST00000637686 PCDHGB1Q9Y5G3 927 aa8.61□□□□□ -1.03
CLN3-261ENST00000637686 NAV2Q8IVL1 2488 aa8.61□□□□□ -1.03
CLN3-261ENST00000637686 LRBAP50851 2863 aa8.6□□□□□ -1.03
CLN3-261ENST00000637686 OR6C68A6NDL8 312 aa8.6□□□□□ -1.03
CLN3-261ENST00000637686 ABCD4O14678 606 aa8.6□□□□□ -1.03
CLN3-261ENST00000637686 ENTPD6O75354 484 aa8.6□□□□□ -1.03
CLN3-261ENST00000637686 GLCEO94923 617 aa8.6□□□□□ -1.03
CLN3-261ENST00000637686 ATE1O95260 518 aa8.6□□□□□ -1.03
CLN3-261ENST00000637686 SLC2A10O95528 541 aa8.6□□□□□ -1.03
CLN3-261ENST00000637686 RAF1P04049 648 aa8.6□□□□□ -1.03
CLN3-261ENST00000637686 QDPRP09417 244 aa8.6□□□□□ -1.03
CLN3-261ENST00000637686 DBTP11182 482 aaKnown RBP8.6□□□□□ -1.03
CLN3-261ENST00000637686 HOXB1P14653 301 aaPredicted RBP8.6□□□□□ -1.03
CLN3-261ENST00000637686 DNASE1P24855 282 aa8.6□□□□□ -1.03
CLN3-261ENST00000637686 CD40P25942 277 aa8.6□□□□□ -1.03
CLN3-261ENST00000637686 MTNR1AP48039 350 aa8.6□□□□□ -1.03
CLN3-261ENST00000637686 CDH11P55287 796 aa8.6□□□□□ -1.03
CLN3-261ENST00000637686 ZNF91Q05481 1191 aa8.6□□□□□ -1.03
CLN3-261ENST00000637686 C10orf128Q5T292 105 aa8.6□□□□□ -1.03
CLN3-261ENST00000637686 ADAM5Q6NVV9 412 aa8.6□□□□□ -1.03
CLN3-261ENST00000637686 PLBD1Q6P4A8 553 aa8.6□□□□□ -1.03
CLN3-261ENST00000637686 TMEM108Q6UXF1 575 aa8.6□□□□□ -1.03
CLN3-261ENST00000637686 PRSS48Q7RTY5 328 aa8.6□□□□□ -1.03
CLN3-261ENST00000637686 SDR9C7Q8NEX9 313 aa8.6□□□□□ -1.03
CLN3-261ENST00000637686 KBTBD8Q8NFY9 601 aa8.6□□□□□ -1.03
CLN3-261ENST00000637686 LILRB1Q8NHL6 650 aaPredicted RBP8.6□□□□□ -1.03
CLN3-261ENST00000637686 AKAP1Q92667 903 aaKnown RBP eCLIP8.6□□□□□ -1.03
CLN3-261ENST00000637686 NEUROG1Q92886 237 aa8.6□□□□□ -1.03
CLN3-261ENST00000637686 NINJ1Q92982 152 aa8.6□□□□□ -1.03
CLN3-261ENST00000637686 MYDGFQ969H8 173 aa8.6□□□□□ -1.03
CLN3-261ENST00000637686 MCHR2Q969V1 340 aa8.6□□□□□ -1.03
CLN3-261ENST00000637686 RBP7Q96R05 134 aa8.6□□□□□ -1.03
CLN3-261ENST00000637686 NMNAT3Q96T66 252 aa8.6□□□□□ -1.03
CLN3-261ENST00000637686 MNTQ99583 582 aa8.6□□□□□ -1.03
CLN3-261ENST00000637686 FOXB1Q99853 325 aa8.6□□□□□ -1.03
CLN3-261ENST00000637686 MARCH7Q9H992 704 aa8.6□□□□□ -1.03
CLN3-261ENST00000637686 FGF20Q9NP95 211 aaPredicted RBP8.6□□□□□ -1.03
CLN3-261ENST00000637686 OBP2BQ9NPH6 170 aa8.6□□□□□ -1.03
CLN3-261ENST00000637686 INPP5EQ9NRR6 644 aa8.6□□□□□ -1.03
CLN3-261ENST00000637686 EDARQ9UNE0 448 aa8.6□□□□□ -1.03
CLN3-261ENST00000637686 EXOGQ9Y2C4 368 aaKnown RBP8.6□□□□□ -1.03
CLN3-261ENST00000637686 PCDHGB5Q9Y5G0 923 aa8.6□□□□□ -1.03
CLN3-261ENST00000637686 TEX15Q9BXT5 2789 aa8.6□□□□□ -1.03
CLN3-261ENST00000637686 POLQO75417 2590 aa8.6□□□□□ -1.03
CLN3-261ENST00000637686 A0A087WXM4 84 aa8.59□□□□□ -1.03
CLN3-261ENST00000637686 ARPC4-TTLL3A0A0A6YYG9 625 aa8.59□□□□□ -1.03
CLN3-261ENST00000637686 ZNF503-AS2A6NEH8 195 aa8.59□□□□□ -1.03
CLN3-261ENST00000637686 CCDC182A6NF36 153 aa8.59□□□□□ -1.03
CLN3-261ENST00000637686 SHISA9B4DS77 424 aa8.59□□□□□ -1.03
CLN3-261ENST00000637686 M0R129 80 aa8.59□□□□□ -1.03
CLN3-261ENST00000637686 HS3ST1O14792 307 aa8.59□□□□□ -1.03
CLN3-261ENST00000637686 ARHGEF9O43307 516 aa8.59□□□□□ -1.03
CLN3-261ENST00000637686 DHHO43323 396 aa8.59□□□□□ -1.03
CLN3-261ENST00000637686 FAM20BO75063 409 aa8.59□□□□□ -1.03
CLN3-261ENST00000637686 KHDRBS3O75525 346 aaKnown RBP8.59□□□□□ -1.03
CLN3-261ENST00000637686 FADS2O95864 444 aaKnown RBP8.59□□□□□ -1.03
CLN3-261ENST00000637686 SPI1P17947 270 aa8.59□□□□□ -1.03
CLN3-261ENST00000637686 CD53P19397 219 aa8.59□□□□□ -1.03
CLN3-261ENST00000637686 DCKP27707 260 aa8.59□□□□□ -1.03
CLN3-261ENST00000637686 FMO3P31513 532 aa8.59□□□□□ -1.03
CLN3-261ENST00000637686 CAPZA2P47755 286 aa8.59□□□□□ -1.03
CLN3-261ENST00000637686 ACTC1P68032 377 aa8.59□□□□□ -1.03
CLN3-261ENST00000637686 ACTA1P68133 377 aa8.59□□□□□ -1.03
CLN3-261ENST00000637686 MVKQ03426 396 aa8.59□□□□□ -1.03
CLN3-261ENST00000637686 SPOCK1Q08629 439 aa8.59□□□□□ -1.03
CLN3-261ENST00000637686 NRN1LQ496H8 165 aa8.59□□□□□ -1.03
CLN3-261ENST00000637686 ZNF672Q499Z4 452 aaPredicted RBP8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms