RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 ZNF347Q96SE7 839 aa12.01□□□□□ -0.49
CLN3-249ENST00000636685 EPYCQ99645 322 aa12.01□□□□□ -0.49
CLN3-249ENST00000636685 MMP28Q9H239 520 aa12.01□□□□□ -0.49
CLN3-249ENST00000636685 SEMA6AQ9H2E6 1030 aa12.01□□□□□ -0.49
CLN3-249ENST00000636685 CACYBPQ9HB71 228 aaKnown RBP12.01□□□□□ -0.49
CLN3-249ENST00000636685 CCNB1IP1Q9NPC3 277 aa12.01□□□□□ -0.49
CLN3-249ENST00000636685 ZNF446Q9NWS9 450 aa12.01□□□□□ -0.49
CLN3-249ENST00000636685 IFT52Q9Y366 437 aa12.01□□□□□ -0.49
CLN3-249ENST00000636685 WI2-2373I1.2A0A1W2PRP0 233 aa12□□□□□ -0.49
CLN3-249ENST00000636685 SURF4O15260 269 aa12□□□□□ -0.49
CLN3-249ENST00000636685 SLC6A2P23975 617 aa12□□□□□ -0.49
CLN3-249ENST00000636685 CDAP32320 146 aa12□□□□□ -0.49
CLN3-249ENST00000636685 ZNF84P51523 738 aa12□□□□□ -0.49
CLN3-249ENST00000636685 EFNB2P52799 333 aa12□□□□□ -0.49
CLN3-249ENST00000636685 MVDP53602 400 aa12□□□□□ -0.49
CLN3-249ENST00000636685 PSG4Q00888 419 aa12□□□□□ -0.49
CLN3-249ENST00000636685 TAF11Q15544 211 aa12□□□□□ -0.49
CLN3-249ENST00000636685 PDCD4Q53EL6 469 aaKnown RBP12□□□□□ -0.49
CLN3-249ENST00000636685 C1orf122Q6ZSJ8 110 aa12□□□□□ -0.49
CLN3-249ENST00000636685 HDXQ7Z353 690 aa12□□□□□ -0.49
CLN3-249ENST00000636685 PIP4P2Q8N4L2 257 aa12□□□□□ -0.49
CLN3-249ENST00000636685 KLHDC1Q8N7A1 406 aa12□□□□□ -0.49
CLN3-249ENST00000636685 LSMEM1Q8N8F7 131 aa12□□□□□ -0.49
CLN3-249ENST00000636685 OR5J2Q8NH18 312 aa12□□□□□ -0.49
CLN3-249ENST00000636685 VANGL1Q8TAA9 524 aaPredicted RBP12□□□□□ -0.49
CLN3-249ENST00000636685 SLC35B4Q969S0 331 aa12□□□□□ -0.49
CLN3-249ENST00000636685 KCNN2Q9H2S1 579 aa12□□□□□ -0.49
CLN3-249ENST00000636685 AKTIPQ9H8T0 292 aa12□□□□□ -0.49
CLN3-249ENST00000636685 MAN2C1Q9NTJ4 1040 aa12□□□□□ -0.49
CLN3-249ENST00000636685 A0A0G2JPF8 293 aa11.99□□□□□ -0.49
CLN3-249ENST00000636685 IGHV3-64DA0A0J9YX35 117 aa11.99□□□□□ -0.49
CLN3-249ENST00000636685 BTBD17A6NE02 478 aa11.99□□□□□ -0.49
CLN3-249ENST00000636685 ANKRD61A6NGH8 418 aa11.99□□□□□ -0.49
CLN3-249ENST00000636685 HNRNPCL2B2RXH8 293 aa11.99□□□□□ -0.49
CLN3-249ENST00000636685 HNRNPCL3B7ZW38 293 aa11.99□□□□□ -0.49
CLN3-249ENST00000636685 IFNL4K9M1U5 179 aa11.99□□□□□ -0.49
CLN3-249ENST00000636685 HNRNPCL1O60812 293 aaKnown RBP11.99□□□□□ -0.49
CLN3-249ENST00000636685 OR6A2O95222 327 aa11.99□□□□□ -0.49
CLN3-249ENST00000636685 HNRNPCL4P0DMR1 293 aa11.99□□□□□ -0.49
CLN3-249ENST00000636685 IGLL1P15814 213 aa11.99□□□□□ -0.49
CLN3-249ENST00000636685 ARHGDIAP52565 204 aa11.99□□□□□ -0.49
CLN3-249ENST00000636685 CLRN1P58418 232 aa11.99□□□□□ -0.49
CLN3-249ENST00000636685 COX10Q12887 443 aa11.99□□□□□ -0.49
CLN3-249ENST00000636685 CEP85LQ5SZL2 805 aa11.99□□□□□ -0.49
CLN3-249ENST00000636685 ULK3Q6PHR2 472 aa11.99□□□□□ -0.49
CLN3-249ENST00000636685 COMTD1Q86VU5 262 aa11.99□□□□□ -0.49
CLN3-249ENST00000636685 CNPY4Q8N129 248 aa11.99□□□□□ -0.49
CLN3-249ENST00000636685 C4orf33Q8N1A6 199 aa11.99□□□□□ -0.49
CLN3-249ENST00000636685 ZNF607Q96SK3 696 aa11.99□□□□□ -0.49
CLN3-249ENST00000636685 OCSTAMPQ9BR26 566 aa11.99□□□□□ -0.49
CLN3-249ENST00000636685 SIRPDQ9H106 197 aa11.99□□□□□ -0.49
CLN3-249ENST00000636685 PPA2Q9H2U2 334 aa11.99□□□□□ -0.49
CLN3-249ENST00000636685 FAM96BQ9Y3D0 163 aa11.99□□□□□ -0.49
CLN3-249ENST00000636685 DNAH7Q8WXX0 4024 aa11.98□□□□□ -0.49
CLN3-249ENST00000636685 E9PBE3 544 aa11.98□□□□□ -0.49
CLN3-249ENST00000636685 RNF13O43567 381 aa11.98□□□□□ -0.49
CLN3-249ENST00000636685 ICMTO60725 284 aa11.98□□□□□ -0.49
CLN3-249ENST00000636685 KRT75O95678 551 aa11.98□□□□□ -0.49
CLN3-249ENST00000636685 EPHA3P29320 983 aa11.98□□□□□ -0.49
CLN3-249ENST00000636685 CRATP43155 626 aa11.98□□□□□ -0.49
CLN3-249ENST00000636685 ERFP50548 548 aa11.98□□□□□ -0.49
CLN3-249ENST00000636685 CLNS1AP54105 237 aaKnown RBP11.98□□□□□ -0.49
CLN3-249ENST00000636685 NME5P56597 212 aa11.98□□□□□ -0.49
CLN3-249ENST00000636685 DSTNP60981 165 aa11.98□□□□□ -0.49
CLN3-249ENST00000636685 ERVK-25P63136 954 aa11.98□□□□□ -0.49
CLN3-249ENST00000636685 GABPB1Q06547 395 aaPredicted RBP11.98□□□□□ -0.49
CLN3-249ENST00000636685 HIST3H3Q16695 136 aa11.98□□□□□ -0.49
CLN3-249ENST00000636685 DPY19L1Q2PZI1 675 aa11.98□□□□□ -0.49
CLN3-249ENST00000636685 BEND6Q5SZJ8 279 aaPredicted RBP11.98□□□□□ -0.49
CLN3-249ENST00000636685 ZBTB37Q5TC79 503 aa11.98□□□□□ -0.49
CLN3-249ENST00000636685 METTL11BQ5VVY1 283 aa11.98□□□□□ -0.49
CLN3-249ENST00000636685 FAM91A1Q658Y4 838 aa11.98□□□□□ -0.49
CLN3-249ENST00000636685 TRMT10CQ7L0Y3 403 aaKnown RBP11.98□□□□□ -0.49
CLN3-249ENST00000636685 ATG16L2Q8NAA4 619 aa11.98□□□□□ -0.49
CLN3-249ENST00000636685 C19orf18Q8NEA5 215 aa11.98□□□□□ -0.49
CLN3-249ENST00000636685 NABP1Q96AH0 204 aa11.98□□□□□ -0.49
CLN3-249ENST00000636685 R3HDM4Q96D70 268 aa11.98□□□□□ -0.49
CLN3-249ENST00000636685 CMBLQ96DG6 245 aa11.98□□□□□ -0.49
CLN3-249ENST00000636685 C4orf45Q96LM5 186 aa11.98□□□□□ -0.49
CLN3-249ENST00000636685 TECTBQ96PL2 329 aa11.98□□□□□ -0.49
CLN3-249ENST00000636685 WNT5BQ9H1J7 359 aa11.98□□□□□ -0.49
CLN3-249ENST00000636685 SIAEQ9HAT2 523 aa11.98□□□□□ -0.49
CLN3-249ENST00000636685 ELOVL3Q9HB03 270 aa11.98□□□□□ -0.49
CLN3-249ENST00000636685 TAS2R5Q9NYW4 299 aa11.98□□□□□ -0.49
CLN3-249ENST00000636685 ZNRD1Q9P1U0 126 aa11.98□□□□□ -0.49
CLN3-249ENST00000636685 RNASEK-C17orf49H0YIS7 233 aa11.97□□□□□ -0.49
CLN3-249ENST00000636685 IGHG1P01857 330 aa11.97□□□□□ -0.49
CLN3-249ENST00000636685 KRT4P19013 534 aa11.97□□□□□ -0.49
CLN3-249ENST00000636685 GSTM3P21266 225 aa11.97□□□□□ -0.49
CLN3-249ENST00000636685 KITLGP21583 273 aa11.97□□□□□ -0.49
CLN3-249ENST00000636685 DCDC5Q6ZRR9 648 aa11.97□□□□□ -0.49
CLN3-249ENST00000636685 MOGAT3Q86VF5 341 aa11.97□□□□□ -0.49
CLN3-249ENST00000636685 OR10AD1Q8NGE0 317 aa11.97□□□□□ -0.49
CLN3-249ENST00000636685 PPP1R35Q8TAP8 253 aa11.97□□□□□ -0.49
CLN3-249ENST00000636685 MEGF10Q96KG7 1140 aa11.97□□□□□ -0.49
CLN3-249ENST00000636685 MAGEB18Q96M61 343 aa11.97□□□□□ -0.49
CLN3-249ENST00000636685 B9D2Q9BPU9 175 aa11.97□□□□□ -0.49
CLN3-249ENST00000636685 OR2H1Q9GZK4 316 aa11.97□□□□□ -0.49
CLN3-249ENST00000636685 FN3KRPQ9HA64 309 aa11.97□□□□□ -0.49
CLN3-249ENST00000636685 SELENONQ9NZV5 590 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms