RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 PSG4Q00888 419 aa17.9■□□□□ 0.46
CLN3-240ENST00000631023 GLO1Q04760 184 aa17.9■□□□□ 0.46
CLN3-240ENST00000631023 ADIPOQQ15848 244 aa17.9■□□□□ 0.46
CLN3-240ENST00000631023 ATP6AP1Q15904 470 aa17.9■□□□□ 0.46
CLN3-240ENST00000631023 Q5PR19 223 aa17.9■□□□□ 0.46
CLN3-240ENST00000631023 TGIF2LYQ8IUE0 185 aa17.9■□□□□ 0.46
CLN3-240ENST00000631023 OR6V1Q8N148 313 aa17.9■□□□□ 0.46
CLN3-240ENST00000631023 NPEPL1Q8NDH3 523 aa17.9■□□□□ 0.46
CLN3-240ENST00000631023 FOXN4Q96NZ1 517 aa17.9■□□□□ 0.46
CLN3-240ENST00000631023 CACNG6Q9BXT2 260 aa17.9■□□□□ 0.46
CLN3-240ENST00000631023 RACGAP1Q9H0H5 632 aa17.9■□□□□ 0.46
CLN3-240ENST00000631023 NTN4Q9HB63 628 aa17.9■□□□□ 0.46
CLN3-240ENST00000631023 KLHL21Q9UJP4 597 aa17.9■□□□□ 0.46
CLN3-240ENST00000631023 FBXO9Q9UK97 447 aaPredicted RBP17.9■□□□□ 0.46
CLN3-240ENST00000631023 CMAHPQ9Y471 501 aa17.9■□□□□ 0.46
CLN3-240ENST00000631023 FKBP7Q9Y680 259 aa17.9■□□□□ 0.46
CLN3-240ENST00000631023 OR6C68A6NDL8 312 aa17.89■□□□□ 0.45
CLN3-240ENST00000631023 SNAP29O95721 258 aa17.89■□□□□ 0.45
CLN3-240ENST00000631023 SCG5P05408 212 aa17.89■□□□□ 0.45
CLN3-240ENST00000631023 IGFBP1P08833 259 aaPredicted RBP17.89■□□□□ 0.45
CLN3-240ENST00000631023 PRKACGP22612 351 aa17.89■□□□□ 0.45
CLN3-240ENST00000631023 GLRXP35754 106 aa17.89■□□□□ 0.45
CLN3-240ENST00000631023 SNRPD2P62316 118 aaKnown RBP17.89■□□□□ 0.45
CLN3-240ENST00000631023 SCRN3Q0VDG4 424 aa17.89■□□□□ 0.45
CLN3-240ENST00000631023 CHD3Q12873 2000 aaKnown RBP17.89■□□□□ 0.45
CLN3-240ENST00000631023 SLC36A3Q495N2 470 aa17.89■□□□□ 0.45
CLN3-240ENST00000631023 UGT2A3Q6UWM9 527 aa17.89■□□□□ 0.45
CLN3-240ENST00000631023 ZBTB46Q86UZ6 589 aa17.89■□□□□ 0.45
CLN3-240ENST00000631023 HS3ST5Q8IZT8 346 aa17.89■□□□□ 0.45
CLN3-240ENST00000631023 ATG16L2Q8NAA4 619 aa17.89■□□□□ 0.45
CLN3-240ENST00000631023 CPEB3Q8NE35 698 aaKnown RBP17.89■□□□□ 0.45
CLN3-240ENST00000631023 AKR7LQ8NHP1 331 aa17.89■□□□□ 0.45
CLN3-240ENST00000631023 DNAJC9Q8WXX5 260 aa17.89■□□□□ 0.45
CLN3-240ENST00000631023 REV1Q9UBZ9 1251 aa17.89■□□□□ 0.45
CLN3-240ENST00000631023 DCTN6O00399 190 aa17.88■□□□□ 0.45
CLN3-240ENST00000631023 IFNGP01579 166 aa17.88■□□□□ 0.45
CLN3-240ENST00000631023 TP53P04637 393 aaPredicted RBP17.88■□□□□ 0.45
CLN3-240ENST00000631023 CCL2P13500 99 aa17.88■□□□□ 0.45
CLN3-240ENST00000631023 GDI2P50395 445 aaKnown RBP17.88■□□□□ 0.45
CLN3-240ENST00000631023 AQP6Q13520 282 aa17.88■□□□□ 0.45
CLN3-240ENST00000631023 EFNB3Q15768 340 aa17.88■□□□□ 0.45
CLN3-240ENST00000631023 KCNMB1Q16558 191 aa17.88■□□□□ 0.45
CLN3-240ENST00000631023 SWI5Q1ZZU3 235 aa17.88■□□□□ 0.45
CLN3-240ENST00000631023 UNQ6126/PRO20091Q6UXV3 157 aa17.88■□□□□ 0.45
CLN3-240ENST00000631023 YTHDF3Q7Z739 585 aaKnown RBP17.88■□□□□ 0.45
CLN3-240ENST00000631023 C10orf67Q8IYJ2 551 aa17.88■□□□□ 0.45
CLN3-240ENST00000631023 OR5K1Q8NHB7 308 aa17.88■□□□□ 0.45
CLN3-240ENST00000631023 BARX1Q9HBU1 254 aaPredicted RBP17.88■□□□□ 0.45
CLN3-240ENST00000631023 ZKSCAN7Q9P0L1 754 aaPredicted RBP17.88■□□□□ 0.45
CLN3-240ENST00000631023 KIF17Q9P2E2 1029 aa17.88■□□□□ 0.45
CLN3-240ENST00000631023 POLR1DQ9Y2S0 133 aa17.88■□□□□ 0.45
CLN3-240ENST00000631023 FLNAP21333 2647 aaKnown RBP17.87■□□□□ 0.45
CLN3-240ENST00000631023 IGLV1-36A0A0B4J1U3 117 aa17.87■□□□□ 0.45
CLN3-240ENST00000631023 MPZL1O95297 269 aa17.87■□□□□ 0.45
CLN3-240ENST00000631023 CCNOP22674 350 aa17.87■□□□□ 0.45
CLN3-240ENST00000631023 PCSK6P29122 969 aa17.87■□□□□ 0.45
CLN3-240ENST00000631023 RAD52P43351 418 aa17.87■□□□□ 0.45
CLN3-240ENST00000631023 RAB35Q15286 201 aa17.87■□□□□ 0.45
CLN3-240ENST00000631023 MST1LQ2TV78 715 aa17.87■□□□□ 0.45
CLN3-240ENST00000631023 HIPK1Q86Z02 1210 aa17.87■□□□□ 0.45
CLN3-240ENST00000631023 WFDC11Q8NEX6 87 aa17.87■□□□□ 0.45
CLN3-240ENST00000631023 OR2T4Q8NH00 348 aa17.87■□□□□ 0.45
CLN3-240ENST00000631023 OR4Q3Q8NH05 313 aa17.87■□□□□ 0.45
CLN3-240ENST00000631023 C11orf40Q8WZ69 217 aa17.87■□□□□ 0.45
CLN3-240ENST00000631023 WNT5BQ9H1J7 359 aa17.87■□□□□ 0.45
CLN3-240ENST00000631023 PLK3Q9H4B4 646 aa17.87■□□□□ 0.45
CLN3-240ENST00000631023 EIF3KQ9UBQ5 218 aaKnown RBP17.87■□□□□ 0.45
CLN3-240ENST00000631023 ACANP16112 2415 aa17.87■□□□□ 0.45
CLN3-240ENST00000631023 RIIAD1A6NNX1 92 aa17.87■□□□□ 0.45
CLN3-240ENST00000631023 H7C417 338 aa17.87■□□□□ 0.45
CLN3-240ENST00000631023 OSMP13725 252 aa17.87■□□□□ 0.45
CLN3-240ENST00000631023 POU1F1P28069 291 aa17.87■□□□□ 0.45
CLN3-240ENST00000631023 ACTR3P61158 418 aa17.87■□□□□ 0.45
CLN3-240ENST00000631023 ZNF362Q5T0B9 420 aaPredicted RBP17.87■□□□□ 0.45
CLN3-240ENST00000631023 ZNF774Q6NX45 483 aa17.87■□□□□ 0.45
CLN3-240ENST00000631023 SLC27A4Q6P1M0 643 aa17.87■□□□□ 0.45
CLN3-240ENST00000631023 KRTAP1-3Q8IUG1 177 aa17.87■□□□□ 0.45
CLN3-240ENST00000631023 CYB561A3Q8NBI2 242 aa17.87■□□□□ 0.45
CLN3-240ENST00000631023 POM121L2Q96KW2 1035 aa17.87■□□□□ 0.45
CLN3-240ENST00000631023 RAB3IPQ96QF0 476 aaPredicted RBP17.87■□□□□ 0.45
CLN3-240ENST00000631023 DDOQ99489 341 aa17.87■□□□□ 0.45
CLN3-240ENST00000631023 FN3KQ9H479 309 aa17.87■□□□□ 0.45
CLN3-240ENST00000631023 NDRG4Q9ULP0 352 aaKnown RBP17.87■□□□□ 0.45
CLN3-240ENST00000631023 C5orf49A4QMS7 147 aa17.86■□□□□ 0.45
CLN3-240ENST00000631023 G3V2T6 193 aa17.86■□□□□ 0.45
CLN3-240ENST00000631023 SGCEO43556 437 aa17.86■□□□□ 0.45
CLN3-240ENST00000631023 HLA-DQA2P01906 255 aa17.86■□□□□ 0.45
CLN3-240ENST00000631023 ZNF3P17036 446 aa17.86■□□□□ 0.45
CLN3-240ENST00000631023 GRK5P34947 590 aa17.86■□□□□ 0.45
CLN3-240ENST00000631023 UCP2P55851 309 aa17.86■□□□□ 0.45
CLN3-240ENST00000631023 ZDHHC13Q8IUH4 622 aa17.86■□□□□ 0.45
CLN3-240ENST00000631023 PAQR4Q8N4S7 273 aaPredicted RBP17.86■□□□□ 0.45
CLN3-240ENST00000631023 SLC37A3Q8NCC5 494 aa17.86■□□□□ 0.45
CLN3-240ENST00000631023 PROKR2Q8NFJ6 384 aa17.86■□□□□ 0.45
CLN3-240ENST00000631023 SLC26A10Q8NG04 563 aa17.86■□□□□ 0.45
CLN3-240ENST00000631023 OR10H5Q8NGA6 315 aa17.86■□□□□ 0.45
CLN3-240ENST00000631023 TEX12Q9BXU0 123 aa17.86■□□□□ 0.45
CLN3-240ENST00000631023 BCL2L14Q9BZR8 327 aa17.86■□□□□ 0.45
CLN3-240ENST00000631023 ASH2LQ9UBL3 628 aa17.86■□□□□ 0.45
CLN3-240ENST00000631023 FAM157BP0CG42 384 aa17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms