RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 OR6C65A6NJZ3 312 aa12.78□□□□□ -0.36
CPSF1-212ENST00000616140 SSX4O60224 188 aa12.78□□□□□ -0.36
CPSF1-212ENST00000616140 IGHV3-9P01782 118 aa12.78□□□□□ -0.36
CPSF1-212ENST00000616140 ALOX5APP20292 161 aa12.78□□□□□ -0.36
CPSF1-212ENST00000616140 CNR1P21554 472 aa12.78□□□□□ -0.36
CPSF1-212ENST00000616140 ENPP1P22413 925 aa12.78□□□□□ -0.36
CPSF1-212ENST00000616140 CASP6P55212 293 aa12.78□□□□□ -0.36
CPSF1-212ENST00000616140 UBE2KP61086 200 aa12.78□□□□□ -0.36
CPSF1-212ENST00000616140 CAMK2BQ13554 666 aa12.78□□□□□ -0.36
CPSF1-212ENST00000616140 PDLIM3Q53GG5 364 aaPredicted RBP12.78□□□□□ -0.36
CPSF1-212ENST00000616140 DCAF12Q5T6F0 453 aa12.78□□□□□ -0.36
CPSF1-212ENST00000616140 CCDC190Q86UF4 302 aa12.78□□□□□ -0.36
CPSF1-212ENST00000616140 TMEM217Q8N7C4 229 aa12.78□□□□□ -0.36
CPSF1-212ENST00000616140 OR51E1Q8TCB6 317 aa12.78□□□□□ -0.36
CPSF1-212ENST00000616140 SLC25A43Q8WUT9 341 aaPredicted RBP12.78□□□□□ -0.36
CPSF1-212ENST00000616140 ARL5BQ96KC2 179 aa12.78□□□□□ -0.36
CPSF1-212ENST00000616140 ABHD6Q9BV23 337 aa12.78□□□□□ -0.36
CPSF1-212ENST00000616140 PTDSS2Q9BVG9 487 aa12.78□□□□□ -0.36
CPSF1-212ENST00000616140 AUNIPQ9H7T9 357 aa12.78□□□□□ -0.36
CPSF1-212ENST00000616140 PLSCR3Q9NRY6 295 aa12.78□□□□□ -0.36
CPSF1-212ENST00000616140 TAS2R5Q9NYW4 299 aa12.78□□□□□ -0.36
CPSF1-212ENST00000616140 SIT1Q9Y3P8 196 aa12.78□□□□□ -0.36
CPSF1-212ENST00000616140 A0A1W2PNR3 127 aa12.77□□□□□ -0.36
CPSF1-212ENST00000616140 AGAP14A8MT82 685 aa12.77□□□□□ -0.36
CPSF1-212ENST00000616140 NRG2O14511 850 aaPredicted RBP12.77□□□□□ -0.36
CPSF1-212ENST00000616140 GPR171O14626 319 aa12.77□□□□□ -0.36
CPSF1-212ENST00000616140 RAD52P43351 418 aa12.77□□□□□ -0.36
CPSF1-212ENST00000616140 KIR2DL3P43628 341 aa12.77□□□□□ -0.36
CPSF1-212ENST00000616140 AKR1C1Q04828 323 aa12.77□□□□□ -0.36
CPSF1-212ENST00000616140 SHEQ5VZ18 495 aa12.77□□□□□ -0.36
CPSF1-212ENST00000616140 PRSS35Q8N3Z0 413 aa12.77□□□□□ -0.36
CPSF1-212ENST00000616140 C22orf15Q8WYQ4 148 aa12.77□□□□□ -0.36
CPSF1-212ENST00000616140 CPNE4Q96A23 557 aaPredicted RBP12.77□□□□□ -0.36
CPSF1-212ENST00000616140 PIGQQ9BRB3 760 aa12.77□□□□□ -0.36
CPSF1-212ENST00000616140 GAREM1Q9H706 876 aa12.77□□□□□ -0.36
CPSF1-212ENST00000616140 FKRPQ9H9S5 495 aa12.77□□□□□ -0.36
CPSF1-212ENST00000616140 KCNG2Q9UJ96 466 aa12.77□□□□□ -0.36
CPSF1-212ENST00000616140 DOCK2Q92608 1830 aa12.77□□□□□ -0.36
CPSF1-212ENST00000616140 TRIP11Q15643 1979 aa12.77□□□□□ -0.37
CPSF1-212ENST00000616140 CD46P15529 392 aa12.77□□□□□ -0.37
CPSF1-212ENST00000616140 ARSJQ5FYB0 599 aaPredicted RBP12.77□□□□□ -0.37
CPSF1-212ENST00000616140 CD300LGQ6UXG3 332 aa12.77□□□□□ -0.37
CPSF1-212ENST00000616140 BHLHE23Q8NDY6 225 aa12.77□□□□□ -0.37
CPSF1-212ENST00000616140 ZG16BQ96DA0 208 aa12.77□□□□□ -0.37
CPSF1-212ENST00000616140 ALG14Q96F25 216 aa12.77□□□□□ -0.37
CPSF1-212ENST00000616140 LRFN5Q96NI6 719 aa12.77□□□□□ -0.37
CPSF1-212ENST00000616140 SIGLEC11Q96RL6 698 aa12.77□□□□□ -0.37
CPSF1-212ENST00000616140 UTP23Q9BRU9 249 aaKnown RBP12.77□□□□□ -0.37
CPSF1-212ENST00000616140 TEX101Q9BY14 249 aa12.77□□□□□ -0.37
CPSF1-212ENST00000616140 SLC19A3Q9BZV2 496 aa12.77□□□□□ -0.37
CPSF1-212ENST00000616140 RNF32Q9H0A6 362 aa12.77□□□□□ -0.37
CPSF1-212ENST00000616140 HRASLSQ9HDD0 168 aa12.77□□□□□ -0.37
CPSF1-212ENST00000616140 IL20Q9NYY1 176 aa12.77□□□□□ -0.37
CPSF1-212ENST00000616140 GNG12Q9UBI6 72 aa12.77□□□□□ -0.37
CPSF1-212ENST00000616140 PIGLQ9Y2B2 252 aa12.77□□□□□ -0.37
CPSF1-212ENST00000616140 TMEM200CA6NKL6 621 aa12.77□□□□□ -0.37
CPSF1-212ENST00000616140 APOBEC1P41238 236 aaKnown RBP12.77□□□□□ -0.37
CPSF1-212ENST00000616140 GFERP55789 205 aa12.77□□□□□ -0.37
CPSF1-212ENST00000616140 TAS2R30P59541 319 aa12.77□□□□□ -0.37
CPSF1-212ENST00000616140 GPR85P60893 370 aa12.77□□□□□ -0.37
CPSF1-212ENST00000616140 LPCAT3Q6P1A2 487 aa12.77□□□□□ -0.37
CPSF1-212ENST00000616140 GABRG1Q8N1C3 465 aa12.77□□□□□ -0.37
CPSF1-212ENST00000616140 SLAMF6Q96DU3 332 aa12.77□□□□□ -0.37
CPSF1-212ENST00000616140 A0A0A6YYD5 115 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 GUSBP08236 651 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 DCTDP32321 178 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 RAE1P78406 368 aaKnown RBP12.76□□□□□ -0.37
CPSF1-212ENST00000616140 SLC25A35Q3KQZ1 300 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 FAM122BQ7Z309 247 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 NUDCD2Q8WVJ2 157 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 SCPEP1Q9HB40 452 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 RAB9BQ9NP90 201 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 PRDM7Q9NQW5 492 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 COL16A1Q07092 1604 aaPredicted RBP12.76□□□□□ -0.37
CPSF1-212ENST00000616140 ICOSLGO75144 302 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 EPXP11678 715 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 RPA2P15927 270 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 TCN2P20062 427 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 GABRA2P47869 451 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 CLDN20P56880 219 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 EMC4Q5J8M3 183 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 PTCRAQ6ISU1 281 aaPredicted RBP12.76□□□□□ -0.37
CPSF1-212ENST00000616140 STAC2Q6ZMT1 411 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 ZNF793Q6ZN11 406 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 KIAA0907Q7Z7F0 614 aaPredicted RBP12.76□□□□□ -0.37
CPSF1-212ENST00000616140 SIRT6Q8N6T7 355 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 WDSUB1Q8N9V3 476 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 GPR32P1Q8NGA4 272 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 OR2G2Q8NGZ5 317 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 HLA-CQ95604 372 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 MARC2Q969Z3 335 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 CHST11Q9NPF2 352 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 HAO2Q9NYQ3 351 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 KLK11Q9UBX7 282 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 MCM3APO60318 1980 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 ZNF705FA8MVS1 300 aaPredicted RBP12.76□□□□□ -0.37
CPSF1-212ENST00000616140 MPPED1O15442 326 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 SGCEO43556 437 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 TPPPO94811 219 aa12.76□□□□□ -0.37
CPSF1-212ENST00000616140 CD3DP04234 171 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms