RNA–Protein interactions for RNA: ENST00000613788.1

CD48-203, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,500 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-203ENST00000613788 WDR76Q9H967 626 aa12.87□□□□□ -0.35
CD48-203ENST00000613788 CCNB1IP1Q9NPC3 277 aa12.87□□□□□ -0.35
CD48-203ENST00000613788 MRPS18AQ9NVS2 196 aaKnown RBP12.87□□□□□ -0.35
CD48-203ENST00000613788 SCN3BQ9NY72 215 aa12.87□□□□□ -0.35
CD48-203ENST00000613788 PCDHGB1Q9Y5G3 927 aa12.87□□□□□ -0.35
CD48-203ENST00000613788 HIVEP3Q5T1R4 2406 aa12.87□□□□□ -0.35
CD48-203ENST00000613788 PCNX1Q96RV3 2341 aa12.86□□□□□ -0.35
CD48-203ENST00000613788 ARPC4-TTLL3A0A0A6YYG9 625 aa12.86□□□□□ -0.35
CD48-203ENST00000613788 SELENOFO60613 162 aa12.86□□□□□ -0.35
CD48-203ENST00000613788 UBL3O95164 117 aa12.86□□□□□ -0.35
CD48-203ENST00000613788 SPARCP09486 303 aa12.86□□□□□ -0.35
CD48-203ENST00000613788 SBK2P0C263 348 aa12.86□□□□□ -0.35
CD48-203ENST00000613788 CD79AP11912 226 aa12.86□□□□□ -0.35
CD48-203ENST00000613788 ARR3P36575 388 aa12.86□□□□□ -0.35
CD48-203ENST00000613788 PEX19P40855 299 aa12.86□□□□□ -0.35
CD48-203ENST00000613788 NAA10P41227 235 aaPredicted RBP12.86□□□□□ -0.35
CD48-203ENST00000613788 TFF3Q07654 80 aa12.86□□□□□ -0.35
CD48-203ENST00000613788 RAB40BQ12829 278 aa12.86□□□□□ -0.35
CD48-203ENST00000613788 PCK2Q16822 640 aa12.86□□□□□ -0.35
CD48-203ENST00000613788 LAIR2Q6ISS4 152 aa12.86□□□□□ -0.35
CD48-203ENST00000613788 TMEM53Q6P2H8 277 aa12.86□□□□□ -0.35
CD48-203ENST00000613788 GJC3Q8NFK1 279 aa12.86□□□□□ -0.35
CD48-203ENST00000613788 MNTQ99583 582 aa12.86□□□□□ -0.35
CD48-203ENST00000613788 YIPF3Q9GZM5 350 aa12.86□□□□□ -0.35
CD48-203ENST00000613788 ADGRL4Q9HBW9 690 aa12.86□□□□□ -0.35
CD48-203ENST00000613788 MOV10Q9HCE1 1003 aaKnown RBP12.86□□□□□ -0.35
CD48-203ENST00000613788 ASH2LQ9UBL3 628 aa12.86□□□□□ -0.35
CD48-203ENST00000613788 NDRG3Q9UGV2 375 aa12.86□□□□□ -0.35
CD48-203ENST00000613788 CYB5R1Q9UHQ9 305 aa12.86□□□□□ -0.35
CD48-203ENST00000613788 EXOGQ9Y2C4 368 aaKnown RBP12.86□□□□□ -0.35
CD48-203ENST00000613788 TIMM10BQ9Y5J6 103 aa12.86□□□□□ -0.35
CD48-203ENST00000613788 TMEM14AQ9Y6G1 99 aa12.86□□□□□ -0.35
CD48-203ENST00000613788 DIDO1Q9BTC0 2240 aaKnown RBP12.85□□□□□ -0.35
CD48-203ENST00000613788 CLEC18AA5D8T8 446 aa12.85□□□□□ -0.35
CD48-203ENST00000613788 EFCAB10A6NFE3 127 aa12.85□□□□□ -0.35
CD48-203ENST00000613788 FAM20BO75063 409 aa12.85□□□□□ -0.35
CD48-203ENST00000613788 FADS2O95864 444 aaKnown RBP12.85□□□□□ -0.35
CD48-203ENST00000613788 HLA-HP01893 362 aa12.85□□□□□ -0.35
CD48-203ENST00000613788 MRPL3P09001 348 aaKnown RBP12.85□□□□□ -0.35
CD48-203ENST00000613788 CCDC159P0C7I6 412 aa12.85□□□□□ -0.35
CD48-203ENST00000613788 RAB1AP62820 205 aa12.85□□□□□ -0.35
CD48-203ENST00000613788 SRSF1Q07955 248 aaKnown RBP eCLIP12.85□□□□□ -0.35
CD48-203ENST00000613788 SCRN3Q0VDG4 424 aa12.85□□□□□ -0.35
CD48-203ENST00000613788 RBM48Q5RL73 367 aaKnown RBP12.85□□□□□ -0.35
CD48-203ENST00000613788 OTPQ5XKR4 325 aa12.85□□□□□ -0.35
CD48-203ENST00000613788 CLEC18BQ6UXF7 455 aa12.85□□□□□ -0.35
CD48-203ENST00000613788 DPY19L4Q7Z388 723 aa12.85□□□□□ -0.35
CD48-203ENST00000613788 ZNF786Q8N393 782 aa12.85□□□□□ -0.35
CD48-203ENST00000613788 ZNF454Q8N9F8 522 aa12.85□□□□□ -0.35
CD48-203ENST00000613788 WDR31Q8NA23 367 aa12.85□□□□□ -0.35
CD48-203ENST00000613788 CLEC18CQ8NCF0 446 aa12.85□□□□□ -0.35
CD48-203ENST00000613788 OR52N5Q8NH56 324 aa12.85□□□□□ -0.35
CD48-203ENST00000613788 LGALS12Q96DT0 336 aa12.85□□□□□ -0.35
CD48-203ENST00000613788 FBXO17Q96EF6 278 aa12.85□□□□□ -0.35
CD48-203ENST00000613788 UBAP1Q9NZ09 502 aa12.85□□□□□ -0.35
CD48-203ENST00000613788 CNOT2Q9NZN8 540 aaKnown RBP12.85□□□□□ -0.35
CD48-203ENST00000613788 LRCH1Q9Y2L9 728 aa12.85□□□□□ -0.35
CD48-203ENST00000613788 TPRKBQ9Y3C4 175 aa12.85□□□□□ -0.35
CD48-203ENST00000613788 SLC1A7O00341 560 aa12.84□□□□□ -0.35
CD48-203ENST00000613788 XPNPEP2O43895 674 aa12.84□□□□□ -0.35
CD48-203ENST00000613788 OR2T7P0C7T2 308 aa12.84□□□□□ -0.35
CD48-203ENST00000613788 ZNF32P17041 273 aa12.84□□□□□ -0.35
CD48-203ENST00000613788 SLC15A1P46059 708 aa12.84□□□□□ -0.35
CD48-203ENST00000613788 PLP2Q04941 152 aa12.84□□□□□ -0.35
CD48-203ENST00000613788 PIGFQ07326 219 aa12.84□□□□□ -0.35
CD48-203ENST00000613788 PPA1Q15181 289 aa12.84□□□□□ -0.35
CD48-203ENST00000613788 GSG1Q2KHT4 349 aa12.84□□□□□ -0.35
CD48-203ENST00000613788 SLC18B1Q6NT16 456 aa12.84□□□□□ -0.35
CD48-203ENST00000613788 CDC20BQ86Y33 519 aa12.84□□□□□ -0.35
CD48-203ENST00000613788 SLC35F2Q8IXU6 374 aa12.84□□□□□ -0.35
CD48-203ENST00000613788 ALDH16A1Q8IZ83 802 aa12.84□□□□□ -0.35
CD48-203ENST00000613788 ZNF540Q8NDQ6 660 aa12.84□□□□□ -0.35
CD48-203ENST00000613788 OR4F15Q8NGB8 312 aa12.84□□□□□ -0.35
CD48-203ENST00000613788 OR2T27Q8NH04 317 aa12.84□□□□□ -0.35
CD48-203ENST00000613788 OTOSQ8NHW6 89 aa12.84□□□□□ -0.35
CD48-203ENST00000613788 YTHDF1Q9BYJ9 559 aaKnown RBP12.84□□□□□ -0.35
CD48-203ENST00000613788 C1orf198Q9H425 327 aa12.84□□□□□ -0.35
CD48-203ENST00000613788 B3GNT2Q9NY97 397 aa12.84□□□□□ -0.35
CD48-203ENST00000613788 ZNF224Q9NZL3 707 aa12.84□□□□□ -0.35
CD48-203ENST00000613788 PSORS1C1Q9UIG5 152 aa12.84□□□□□ -0.35
CD48-203ENST00000613788 LAMP5Q9UJQ1 280 aa12.84□□□□□ -0.35
CD48-203ENST00000613788 BLOC1S6Q9UL45 172 aa12.84□□□□□ -0.35
CD48-203ENST00000613788 KLF2Q9Y5W3 355 aaPredicted RBP12.84□□□□□ -0.35
CD48-203ENST00000613788 SLC25A15Q9Y619 301 aa12.84□□□□□ -0.35
CD48-203ENST00000613788 LHFPL6Q9Y693 200 aa12.84□□□□□ -0.35
CD48-203ENST00000613788 PHYHO14832 338 aa12.83□□□□□ -0.35
CD48-203ENST00000613788 RAB36O95755 333 aa12.83□□□□□ -0.35
CD48-203ENST00000613788 MMP7P09237 267 aaPredicted RBP12.83□□□□□ -0.35
CD48-203ENST00000613788 PATE4P0C8F1 98 aa12.83□□□□□ -0.35
CD48-203ENST00000613788 PIPP12273 146 aaPredicted RBP12.83□□□□□ -0.35
CD48-203ENST00000613788 CBR1P16152 277 aa12.83□□□□□ -0.35
CD48-203ENST00000613788 CCKARP32238 428 aa12.83□□□□□ -0.35
CD48-203ENST00000613788 RPS27P42677 84 aaKnown RBP12.83□□□□□ -0.35
CD48-203ENST00000613788 ACTC1P68032 377 aa12.83□□□□□ -0.35
CD48-203ENST00000613788 ACTA1P68133 377 aa12.83□□□□□ -0.35
CD48-203ENST00000613788 HIST1H3AP68431 136 aa12.83□□□□□ -0.35
CD48-203ENST00000613788 EIF2B1Q14232 305 aaKnown RBP12.83□□□□□ -0.35
CD48-203ENST00000613788 TAB1Q15750 504 aa12.83□□□□□ -0.35
CD48-203ENST00000613788 HIST2H3PS2Q5TEC6 136 aa12.83□□□□□ -0.35
CD48-203ENST00000613788 CORO6Q6QEF8 472 aa12.83□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms