RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 PGLYRP3Q96LB9 341 aa12.58□□□□□ -0.4
USP39-220ENST00000613444 TM9SF2Q99805 663 aa12.58□□□□□ -0.4
USP39-220ENST00000613444 CHCHD6Q9BRQ6 235 aa12.58□□□□□ -0.4
USP39-220ENST00000613444 RBM24Q9BX46 236 aaKnown RBP12.58□□□□□ -0.4
USP39-220ENST00000613444 LINC00470Q9BZP3 86 aa12.58□□□□□ -0.4
USP39-220ENST00000613444 RNF167Q9H6Y7 350 aa12.58□□□□□ -0.4
USP39-220ENST00000613444 CRLF2Q9HC73 371 aa12.58□□□□□ -0.4
USP39-220ENST00000613444 STUB1Q9UNE7 303 aa12.58□□□□□ -0.4
USP39-220ENST00000613444 ITPR1Q14643 2758 aa12.58□□□□□ -0.4
USP39-220ENST00000613444 NOL3O60936 208 aaKnown RBP12.57□□□□□ -0.4
USP39-220ENST00000613444 FCGR2AP12318 317 aa12.57□□□□□ -0.4
USP39-220ENST00000613444 PSMA1P25786 263 aaKnown RBP12.57□□□□□ -0.4
USP39-220ENST00000613444 PSMB10P40306 273 aa12.57□□□□□ -0.4
USP39-220ENST00000613444 TAS2R43P59537 309 aa12.57□□□□□ -0.4
USP39-220ENST00000613444 NFATC3Q12968 1075 aa12.57□□□□□ -0.4
USP39-220ENST00000613444 CDK5R1Q15078 307 aa12.57□□□□□ -0.4
USP39-220ENST00000613444 GUSBP1Q15486 140 aa12.57□□□□□ -0.4
USP39-220ENST00000613444 FAM180AQ6UWF9 173 aa12.57□□□□□ -0.4
USP39-220ENST00000613444 LRRN1Q6UXK5 716 aa12.57□□□□□ -0.4
USP39-220ENST00000613444 ALDH16A1Q8IZ83 802 aa12.57□□□□□ -0.4
USP39-220ENST00000613444 OR10S1Q8NGN2 331 aa12.57□□□□□ -0.4
USP39-220ENST00000613444 HSD17B8Q92506 261 aa12.57□□□□□ -0.4
USP39-220ENST00000613444 TMEM203Q969S6 136 aa12.57□□□□□ -0.4
USP39-220ENST00000613444 DCLRE1CQ96SD1 692 aaKnown RBP12.57□□□□□ -0.4
USP39-220ENST00000613444 TTYH2Q9BSA4 534 aa12.57□□□□□ -0.4
USP39-220ENST00000613444 SLCO5A1Q9H2Y9 848 aa12.57□□□□□ -0.4
USP39-220ENST00000613444 NELFAQ9H3P2 528 aa12.57□□□□□ -0.4
USP39-220ENST00000613444 PARPBPQ9NWS1 579 aa12.57□□□□□ -0.4
USP39-220ENST00000613444 INTS1Q8N201 2190 aaKnown RBP12.57□□□□□ -0.4
USP39-220ENST00000613444 SLC22A1O15245 554 aa12.57□□□□□ -0.4
USP39-220ENST00000613444 KRT8P05787 483 aa12.57□□□□□ -0.4
USP39-220ENST00000613444 AGTR1P30556 359 aa12.57□□□□□ -0.4
USP39-220ENST00000613444 TGM4P49221 684 aa12.57□□□□□ -0.4
USP39-220ENST00000613444 TDGF1P3P51864 188 aa12.57□□□□□ -0.4
USP39-220ENST00000613444 GBX2P52951 348 aaPredicted RBP12.57□□□□□ -0.4
USP39-220ENST00000613444 NANOS3P60323 173 aaKnown RBP12.57□□□□□ -0.4
USP39-220ENST00000613444 LSM6P62312 80 aaKnown RBP12.57□□□□□ -0.4
USP39-220ENST00000613444 MRPS34P82930 218 aaKnown RBP12.57□□□□□ -0.4
USP39-220ENST00000613444 ENDOGQ14249 297 aaKnown RBP12.57□□□□□ -0.4
USP39-220ENST00000613444 ACSF3Q4G176 576 aaPredicted RBP12.57□□□□□ -0.4
USP39-220ENST00000613444 CCDC58Q4VC31 144 aa12.57□□□□□ -0.4
USP39-220ENST00000613444 ZNF679Q8IYX0 411 aa12.57□□□□□ -0.4
USP39-220ENST00000613444 GPR137CQ8N3F9 429 aa12.57□□□□□ -0.4
USP39-220ENST00000613444 OR10H5Q8NGA6 315 aa12.57□□□□□ -0.4
USP39-220ENST00000613444 NDNFQ8TB73 568 aa12.57□□□□□ -0.4
USP39-220ENST00000613444 CPT1CQ8TCG5 803 aa12.57□□□□□ -0.4
USP39-220ENST00000613444 MYCBPQ99417 103 aaPredicted RBP12.57□□□□□ -0.4
USP39-220ENST00000613444 ZNF416Q9BWM5 594 aa12.57□□□□□ -0.4
USP39-220ENST00000613444 PRORYQ9H606 182 aa12.57□□□□□ -0.4
USP39-220ENST00000613444 ELOVL3Q9HB03 270 aa12.57□□□□□ -0.4
USP39-220ENST00000613444 GPR35Q9HC97 309 aa12.57□□□□□ -0.4
USP39-220ENST00000613444 SLC7A10Q9NS82 523 aa12.57□□□□□ -0.4
USP39-220ENST00000613444 PTTG2Q9NZH5 202 aa12.57□□□□□ -0.4
USP39-220ENST00000613444 LOC100506127A0A0U1RQW1 187 aa12.56□□□□□ -0.4
USP39-220ENST00000613444 AHRRA9YTQ3 701 aa12.56□□□□□ -0.4
USP39-220ENST00000613444 SS18L1O75177 396 aaPredicted RBP12.56□□□□□ -0.4
USP39-220ENST00000613444 TACSTD2P09758 323 aa12.56□□□□□ -0.4
USP39-220ENST00000613444 MSR1P21757 451 aa12.56□□□□□ -0.4
USP39-220ENST00000613444 FABP5Q01469 135 aa12.56□□□□□ -0.4
USP39-220ENST00000613444 TIMM50Q3ZCQ8 353 aa12.56□□□□□ -0.4
USP39-220ENST00000613444 KRTCAP3Q53RY4 240 aa12.56□□□□□ -0.4
USP39-220ENST00000613444 RPL22L1Q6P5R6 122 aaKnown RBP12.56□□□□□ -0.4
USP39-220ENST00000613444 ARL9Q6T311 187 aa12.56□□□□□ -0.4
USP39-220ENST00000613444 GDPGP1Q6ZNW5 385 aa12.56□□□□□ -0.4
USP39-220ENST00000613444 CFAP77Q6ZQR2 320 aa12.56□□□□□ -0.4
USP39-220ENST00000613444 MCEMP1Q8IX19 187 aa12.56□□□□□ -0.4
USP39-220ENST00000613444 KDF1Q8NAX2 398 aaPredicted RBP12.56□□□□□ -0.4
USP39-220ENST00000613444 RNF133Q8WVZ7 376 aa12.56□□□□□ -0.4
USP39-220ENST00000613444 SMIM19Q96E16 107 aa12.56□□□□□ -0.4
USP39-220ENST00000613444 GMPPAQ96IJ6 420 aaPredicted RBP12.56□□□□□ -0.4
USP39-220ENST00000613444 TRIB1Q96RU8 372 aa12.56□□□□□ -0.4
USP39-220ENST00000613444 GDF2Q9UK05 429 aaPredicted RBP12.56□□□□□ -0.4
USP39-220ENST00000613444 IKZF2Q9UKS7 526 aa12.56□□□□□ -0.4
USP39-220ENST00000613444 NBEAQ8NFP9 2946 aa12.56□□□□□ -0.4
USP39-220ENST00000613444 HSPB2A8KAH6 182 aa12.56□□□□□ -0.4
USP39-220ENST00000613444 RPL36A-HNRNPH2H7BZ11 118 aa12.56□□□□□ -0.4
USP39-220ENST00000613444 TMCC2O75069 709 aa12.56□□□□□ -0.4
USP39-220ENST00000613444 IGHV3-9P01782 118 aa12.56□□□□□ -0.4
USP39-220ENST00000613444 CD53P19397 219 aa12.56□□□□□ -0.4
USP39-220ENST00000613444 ZNF84P51523 738 aa12.56□□□□□ -0.4
USP39-220ENST00000613444 HSPB2Q16082 182 aa12.56□□□□□ -0.4
USP39-220ENST00000613444 SGCAQ16586 387 aa12.56□□□□□ -0.4
USP39-220ENST00000613444 CEACAM16Q2WEN9 425 aa12.56□□□□□ -0.4
USP39-220ENST00000613444 KCTD18Q6PI47 426 aaPredicted RBP12.56□□□□□ -0.4
USP39-220ENST00000613444 CISD2Q8N5K1 135 aaKnown RBP12.56□□□□□ -0.4
USP39-220ENST00000613444 YIPF7Q8N8F6 280 aa12.56□□□□□ -0.4
USP39-220ENST00000613444 DCUN1D5Q9BTE7 237 aa12.56□□□□□ -0.4
USP39-220ENST00000613444 CDADC1Q9BWV3 514 aa12.56□□□□□ -0.4
USP39-220ENST00000613444 PNRC2Q9NPJ4 139 aaKnown RBP12.56□□□□□ -0.4
USP39-220ENST00000613444 TMEM38BQ9NVV0 291 aa12.56□□□□□ -0.4
USP39-220ENST00000613444 ASH2LQ9UBL3 628 aa12.56□□□□□ -0.4
USP39-220ENST00000613444 LRP12Q9Y561 859 aa12.56□□□□□ -0.4
USP39-220ENST00000613444 SRSF10O75494 262 aaKnown RBP12.55□□□□□ -0.4
USP39-220ENST00000613444 CD1AP06126 327 aa12.55□□□□□ -0.4
USP39-220ENST00000613444 ZNF182P17025 639 aaPredicted RBP12.55□□□□□ -0.4
USP39-220ENST00000613444 OPRL1P41146 370 aa12.55□□□□□ -0.4
USP39-220ENST00000613444 ROR2Q01974 943 aaKnown RBP12.55□□□□□ -0.4
USP39-220ENST00000613444 SLC3A1Q07837 685 aa12.55□□□□□ -0.4
USP39-220ENST00000613444 INSL4Q14641 139 aa12.55□□□□□ -0.4
USP39-220ENST00000613444 FAM27BQ5VT28 67 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms