RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 MSR1P21757 451 aa12.88□□□□□ -0.35
LIG1-215ENST00000597901 ACHEP22303 614 aa12.88□□□□□ -0.35
LIG1-215ENST00000597901 IGFBP5P24593 272 aa12.88□□□□□ -0.35
LIG1-215ENST00000597901 MRPS11P82912 194 aaKnown RBP12.88□□□□□ -0.35
LIG1-215ENST00000597901 ZNF718Q3SXZ3 478 aa12.88□□□□□ -0.35
LIG1-215ENST00000597901 MESTQ5EB52 335 aa12.88□□□□□ -0.35
LIG1-215ENST00000597901 SAMD4BQ5PRF9 694 aaKnown RBP12.88□□□□□ -0.35
LIG1-215ENST00000597901 ZNF774Q6NX45 483 aa12.88□□□□□ -0.35
LIG1-215ENST00000597901 TMEM154Q6P9G4 183 aa12.88□□□□□ -0.35
LIG1-215ENST00000597901 ZNF101Q8IZC7 436 aa12.88□□□□□ -0.35
LIG1-215ENST00000597901 PGAM4Q8N0Y7 254 aa12.88□□□□□ -0.35
LIG1-215ENST00000597901 TMEM158Q8WZ71 300 aa12.88□□□□□ -0.35
LIG1-215ENST00000597901 MARS2Q96GW9 593 aaKnown RBP12.88□□□□□ -0.35
LIG1-215ENST00000597901 C1orf159Q96HA4 380 aa12.88□□□□□ -0.35
LIG1-215ENST00000597901 DHRS1Q96LJ7 313 aa12.88□□□□□ -0.35
LIG1-215ENST00000597901 ZNF570Q96NI8 536 aa12.88□□□□□ -0.35
LIG1-215ENST00000597901 SNX18Q96RF0 628 aa12.88□□□□□ -0.35
LIG1-215ENST00000597901 GPA33Q99795 319 aa12.88□□□□□ -0.35
LIG1-215ENST00000597901 WACQ9BTA9 647 aa12.88□□□□□ -0.35
LIG1-215ENST00000597901 NDEL1Q9GZM8 345 aa12.88□□□□□ -0.35
LIG1-215ENST00000597901 EMC7Q9NPA0 242 aa12.88□□□□□ -0.35
LIG1-215ENST00000597901 AURKCQ9UQB9 309 aa12.88□□□□□ -0.35
LIG1-215ENST00000597901 UNC119BA6NIH7 251 aa12.87□□□□□ -0.35
LIG1-215ENST00000597901 NCR1O76036 304 aa12.87□□□□□ -0.35
LIG1-215ENST00000597901 NGFP01138 241 aa12.87□□□□□ -0.35
LIG1-215ENST00000597901 SEMG1P04279 462 aa12.87□□□□□ -0.35
LIG1-215ENST00000597901 GCH1P30793 250 aa12.87□□□□□ -0.35
LIG1-215ENST00000597901 GPR6P46095 362 aaPredicted RBP12.87□□□□□ -0.35
LIG1-215ENST00000597901 SMIM11AP58511 58 aa12.87□□□□□ -0.35
LIG1-215ENST00000597901 CCL8P80075 99 aa12.87□□□□□ -0.35
LIG1-215ENST00000597901 PCGF3Q3KNV8 242 aa12.87□□□□□ -0.35
LIG1-215ENST00000597901 FAM120AOSQ5T036 256 aa12.87□□□□□ -0.35
LIG1-215ENST00000597901 GPR139Q6DWJ6 353 aa12.87□□□□□ -0.35
LIG1-215ENST00000597901 UNQ6126/PRO20091Q6UXV3 157 aa12.87□□□□□ -0.35
LIG1-215ENST00000597901 THSD4Q6ZMP0 1018 aa12.87□□□□□ -0.35
LIG1-215ENST00000597901 DPY19L2P2Q6ZN68 376 aa12.87□□□□□ -0.35
LIG1-215ENST00000597901 ZER1Q7Z7L7 766 aa12.87□□□□□ -0.35
LIG1-215ENST00000597901 C1orf174Q8IYL3 243 aa12.87□□□□□ -0.35
LIG1-215ENST00000597901 LINC01356Q8N9X3 169 aa12.87□□□□□ -0.35
LIG1-215ENST00000597901 SLC25A40Q8TBP6 338 aa12.87□□□□□ -0.35
LIG1-215ENST00000597901 SNX33Q8WV41 574 aa12.87□□□□□ -0.35
LIG1-215ENST00000597901 RSRC1Q96IZ7 334 aaKnown RBP12.87□□□□□ -0.35
LIG1-215ENST00000597901 C4orf45Q96LM5 186 aa12.87□□□□□ -0.35
LIG1-215ENST00000597901 ZNF275Q9NSD4 429 aaPredicted RBP12.87□□□□□ -0.35
LIG1-215ENST00000597901 NKIRAS2Q9NYR9 191 aa12.87□□□□□ -0.35
LIG1-215ENST00000597901 IL20RAQ9UHF4 553 aa12.87□□□□□ -0.35
LIG1-215ENST00000597901 MAGEL2Q9UJ55 1249 aa12.87□□□□□ -0.35
LIG1-215ENST00000597901 IER3IP1Q9Y5U9 82 aa12.87□□□□□ -0.35
LIG1-215ENST00000597901 V9GYQ6 96 aa12.87□□□□□ -0.35
LIG1-215ENST00000597901 CHD3Q12873 2000 aaKnown RBP12.86□□□□□ -0.35
LIG1-215ENST00000597901 TEX13CA0A0J9YWL9 993 aa12.86□□□□□ -0.35
LIG1-215ENST00000597901 SLC16A7O60669 478 aa12.86□□□□□ -0.35
LIG1-215ENST00000597901 CDC14BO60729 498 aa12.86□□□□□ -0.35
LIG1-215ENST00000597901 KHDRBS3O75525 346 aaKnown RBP12.86□□□□□ -0.35
LIG1-215ENST00000597901 RP2O75695 350 aa12.86□□□□□ -0.35
LIG1-215ENST00000597901 CTLA4P16410 223 aa12.86□□□□□ -0.35
LIG1-215ENST00000597901 SDHAP31040 664 aa12.86□□□□□ -0.35
LIG1-215ENST00000597901 MPV17P39210 176 aa12.86□□□□□ -0.35
LIG1-215ENST00000597901 FXYD6P3P58550 94 aa12.86□□□□□ -0.35
LIG1-215ENST00000597901 SPATA46Q5T0L3 261 aa12.86□□□□□ -0.35
LIG1-215ENST00000597901 KLF14Q8TD94 323 aaPredicted RBP12.86□□□□□ -0.35
LIG1-215ENST00000597901 GTF3AQ92664 365 aaKnown RBP12.86□□□□□ -0.35
LIG1-215ENST00000597901 MCUR1Q96AQ8 359 aa12.86□□□□□ -0.35
LIG1-215ENST00000597901 RASD2Q96D21 266 aa12.86□□□□□ -0.35
LIG1-215ENST00000597901 NSMCE2Q96MF7 247 aa12.86□□□□□ -0.35
LIG1-215ENST00000597901 GPX7Q96SL4 187 aaPredicted RBP12.86□□□□□ -0.35
LIG1-215ENST00000597901 OR2J1Q9GZK6 312 aa12.86□□□□□ -0.35
LIG1-215ENST00000597901 RACGAP1Q9H0H5 632 aa12.86□□□□□ -0.35
LIG1-215ENST00000597901 KRCC1Q9NPI7 259 aaPredicted RBP12.86□□□□□ -0.35
LIG1-215ENST00000597901 VSX1Q9NZR4 365 aaPredicted RBP12.86□□□□□ -0.35
LIG1-215ENST00000597901 COA3Q9Y2R0 106 aaPredicted RBP12.86□□□□□ -0.35
LIG1-215ENST00000597901 YLPM1P49750 1951 aaKnown RBP12.85□□□□□ -0.35
LIG1-215ENST00000597901 IMPA2O14732 288 aa12.85□□□□□ -0.35
LIG1-215ENST00000597901 WNT9BO14905 357 aa12.85□□□□□ -0.35
LIG1-215ENST00000597901 PPIHO43447 177 aaKnown RBP12.85□□□□□ -0.35
LIG1-215ENST00000597901 ICMTO60725 284 aa12.85□□□□□ -0.35
LIG1-215ENST00000597901 DCTN3O75935 186 aa12.85□□□□□ -0.35
LIG1-215ENST00000597901 GADD45GO95257 159 aa12.85□□□□□ -0.35
LIG1-215ENST00000597901 MPZL1O95297 269 aa12.85□□□□□ -0.35
LIG1-215ENST00000597901 TXNDC12O95881 172 aa12.85□□□□□ -0.35
LIG1-215ENST00000597901 MT-ND5P03915 603 aa12.85□□□□□ -0.35
LIG1-215ENST00000597901 COX5BP10606 129 aa12.85□□□□□ -0.35
LIG1-215ENST00000597901 HNF1AP20823 631 aa12.85□□□□□ -0.35
LIG1-215ENST00000597901 CDKN2AP42771 156 aaKnown RBP12.85□□□□□ -0.35
LIG1-215ENST00000597901 CRYBB2P43320 205 aa12.85□□□□□ -0.35
LIG1-215ENST00000597901 CDH15P55291 814 aa12.85□□□□□ -0.35
LIG1-215ENST00000597901 PPP1CBP62140 327 aa12.85□□□□□ -0.35
LIG1-215ENST00000597901 GLO1Q04760 184 aa12.85□□□□□ -0.35
LIG1-215ENST00000597901 KRR1Q13601 381 aaKnown RBP12.85□□□□□ -0.35
LIG1-215ENST00000597901 TSTQ16762 297 aaKnown RBP12.85□□□□□ -0.35
LIG1-215ENST00000597901 CR1LQ2VPA4 569 aa12.85□□□□□ -0.35
LIG1-215ENST00000597901 RFX4Q33E94 735 aa12.85□□□□□ -0.35
LIG1-215ENST00000597901 MBNL2Q5VZF2 373 aaKnown RBP12.85□□□□□ -0.35
LIG1-215ENST00000597901 SMARCD3Q6STE5 483 aa12.85□□□□□ -0.35
LIG1-215ENST00000597901 C16orf89Q6UX73 402 aa12.85□□□□□ -0.35
LIG1-215ENST00000597901 IL17RELQ6ZVW7 336 aa12.85□□□□□ -0.35
LIG1-215ENST00000597901 DEFB107AQ8IZN7 70 aa12.85□□□□□ -0.35
LIG1-215ENST00000597901 CLDND2Q8NHS1 167 aa12.85□□□□□ -0.35
LIG1-215ENST00000597901 ABHD4Q8TB40 342 aa12.85□□□□□ -0.35
LIG1-215ENST00000597901 NUAK2Q9H093 628 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 79.4 ms