RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 DOCK8Q8NF50 2099 aa13.8□□□□□ -0.2
UPF1-204ENST00000596842 TMEM82A0PJX8 343 aa13.79□□□□□ -0.2
UPF1-204ENST00000596842 SOX1O00570 391 aaPredicted RBP13.79□□□□□ -0.2
UPF1-204ENST00000596842 WISP1O95388 367 aa13.79□□□□□ -0.2
UPF1-204ENST00000596842 CYB5AP00167 134 aa13.79□□□□□ -0.2
UPF1-204ENST00000596842 OPN1LWP04000 364 aa13.79□□□□□ -0.2
UPF1-204ENST00000596842 CSF1P09603 554 aa13.79□□□□□ -0.2
UPF1-204ENST00000596842 CTAG1AP78358 180 aa13.79□□□□□ -0.2
UPF1-204ENST00000596842 CDNFQ49AH0 187 aa13.79□□□□□ -0.2
UPF1-204ENST00000596842 UNQ6126/PRO20091Q6UXV3 157 aa13.79□□□□□ -0.2
UPF1-204ENST00000596842 TMEM184AQ6ZMB5 413 aa13.79□□□□□ -0.2
UPF1-204ENST00000596842 TSLPQ969D9 159 aa13.79□□□□□ -0.2
UPF1-204ENST00000596842 ZNF75AQ96N20 296 aa13.79□□□□□ -0.2
UPF1-204ENST00000596842 SSX3Q99909 188 aa13.79□□□□□ -0.2
UPF1-204ENST00000596842 CKLFQ9UBR5 152 aa13.79□□□□□ -0.2
UPF1-204ENST00000596842 ZNF264O43296 627 aa13.79□□□□□ -0.2
UPF1-204ENST00000596842 PNPP00491 289 aa13.79□□□□□ -0.2
UPF1-204ENST00000596842 ZP2Q05996 745 aa13.79□□□□□ -0.2
UPF1-204ENST00000596842 KRBOX4Q5JUW0 171 aa13.79□□□□□ -0.2
UPF1-204ENST00000596842 PDSS1Q5T2R2 415 aa13.79□□□□□ -0.2
UPF1-204ENST00000596842 RGS7BPQ6MZT1 257 aaPredicted RBP13.79□□□□□ -0.2
UPF1-204ENST00000596842 SEZ6L2Q6UXD5 910 aa13.79□□□□□ -0.2
UPF1-204ENST00000596842 COMMD2Q86X83 199 aa13.79□□□□□ -0.2
UPF1-204ENST00000596842 FAM160A2Q8N612 972 aaPredicted RBP13.79□□□□□ -0.2
UPF1-204ENST00000596842 ZDHHC19Q8WVZ1 309 aaPredicted RBP13.79□□□□□ -0.2
UPF1-204ENST00000596842 ZNF578Q96N58 590 aaPredicted RBP13.79□□□□□ -0.2
UPF1-204ENST00000596842 PLEKHA1Q9HB21 404 aa13.79□□□□□ -0.2
UPF1-204ENST00000596842 KIF25Q9UIL4 384 aa13.79□□□□□ -0.2
UPF1-204ENST00000596842 NR0B1P51843 470 aaKnown RBP13.79□□□□□ -0.2
UPF1-204ENST00000596842 MRPS10P82664 201 aaKnown RBP13.79□□□□□ -0.2
UPF1-204ENST00000596842 TMEM92Q6UXU6 159 aa13.79□□□□□ -0.2
UPF1-204ENST00000596842 CBLN2Q8IUK8 224 aa13.79□□□□□ -0.2
UPF1-204ENST00000596842 C19orf47Q8N9M1 422 aaKnown RBP13.79□□□□□ -0.2
UPF1-204ENST00000596842 PELOQ9BRX2 385 aaKnown RBP13.79□□□□□ -0.2
UPF1-204ENST00000596842 APMAPQ9HDC9 416 aa13.79□□□□□ -0.2
UPF1-204ENST00000596842 DHCR7Q9UBM7 475 aaKnown RBP13.79□□□□□ -0.2
UPF1-204ENST00000596842 TMEM272A0A1B0GTI8 110 aa13.78□□□□□ -0.2
UPF1-204ENST00000596842 OR2M5A3KFT3 312 aa13.78□□□□□ -0.2
UPF1-204ENST00000596842 UTS2O95399 124 aa13.78□□□□□ -0.2
UPF1-204ENST00000596842 HLA-AP01891 365 aaKnown RBP13.78□□□□□ -0.2
UPF1-204ENST00000596842 CPN1P15169 458 aa13.78□□□□□ -0.2
UPF1-204ENST00000596842 AKR1C4P17516 323 aa13.78□□□□□ -0.2
UPF1-204ENST00000596842 ZP3P21754 424 aa13.78□□□□□ -0.2
UPF1-204ENST00000596842 KIR3DL2P43630 455 aa13.78□□□□□ -0.2
UPF1-204ENST00000596842 EGR4Q05215 589 aa13.78□□□□□ -0.2
UPF1-204ENST00000596842 NKAIN2Q5VXU1 208 aa13.78□□□□□ -0.2
UPF1-204ENST00000596842 GABRG1Q8N1C3 465 aa13.78□□□□□ -0.2
UPF1-204ENST00000596842 GPR119Q8TDV5 335 aa13.78□□□□□ -0.2
UPF1-204ENST00000596842 SPACA5Q96QH8 159 aa13.78□□□□□ -0.2
UPF1-204ENST00000596842 NMNAT2Q9BZQ4 307 aa13.78□□□□□ -0.2
UPF1-204ENST00000596842 RTN4RQ9BZR6 473 aa13.78□□□□□ -0.2
UPF1-204ENST00000596842 POLE3Q9NRF9 147 aa13.78□□□□□ -0.2
UPF1-204ENST00000596842 UBQLN4Q9NRR5 601 aa13.78□□□□□ -0.2
UPF1-204ENST00000596842 EMC9Q9Y3B6 208 aa13.78□□□□□ -0.2
UPF1-204ENST00000596842 TMEM184BQ9Y519 407 aaPredicted RBP13.78□□□□□ -0.2
UPF1-204ENST00000596842 SLCO1B1Q9Y6L6 691 aa13.78□□□□□ -0.2
UPF1-204ENST00000596842 MFSD2BA6NFX1 497 aa13.78□□□□□ -0.2
UPF1-204ENST00000596842 CD2P06729 351 aa13.78□□□□□ -0.2
UPF1-204ENST00000596842 THEGLP0DJG4 465 aa13.78□□□□□ -0.2
UPF1-204ENST00000596842 ALOX5APP20292 161 aa13.78□□□□□ -0.2
UPF1-204ENST00000596842 IL12BP29460 328 aa13.78□□□□□ -0.2
UPF1-204ENST00000596842 EIF2B1Q14232 305 aaKnown RBP13.78□□□□□ -0.2
UPF1-204ENST00000596842 CSRP2Q16527 193 aa13.78□□□□□ -0.2
UPF1-204ENST00000596842 HLA-DQA1Q5Y7H0 255 aa13.78□□□□□ -0.2
UPF1-204ENST00000596842 OLFML2AQ68BL7 652 aa13.78□□□□□ -0.2
UPF1-204ENST00000596842 LINC00114Q6XXX2 140 aa13.78□□□□□ -0.2
UPF1-204ENST00000596842 BPIFB2Q8N4F0 458 aa13.78□□□□□ -0.2
UPF1-204ENST00000596842 PNPLA2Q96AD5 504 aa13.78□□□□□ -0.2
UPF1-204ENST00000596842 SLC6A7Q99884 636 aa13.78□□□□□ -0.2
UPF1-204ENST00000596842 EML5Q05BV3 1969 aa13.78□□□□□ -0.2
UPF1-204ENST00000596842 SNRPGP15A8MWD9 76 aa13.78□□□□□ -0.2
UPF1-204ENST00000596842 ICOSLGO75144 302 aa13.78□□□□□ -0.2
UPF1-204ENST00000596842 WNT11O96014 354 aa13.78□□□□□ -0.2
UPF1-204ENST00000596842 DCNP07585 359 aaKnown RBP13.78□□□□□ -0.2
UPF1-204ENST00000596842 OR4E1P0C645 316 aa13.78□□□□□ -0.2
UPF1-204ENST00000596842 ZNF141Q15928 474 aa13.78□□□□□ -0.2
UPF1-204ENST00000596842 C3orf33Q6P1S2 294 aa13.78□□□□□ -0.2
UPF1-204ENST00000596842 BIVMQ86UB2 503 aa13.78□□□□□ -0.2
UPF1-204ENST00000596842 WDSUB1Q8N9V3 476 aa13.78□□□□□ -0.2
UPF1-204ENST00000596842 SP7Q8TDD2 431 aaPredicted RBP13.78□□□□□ -0.2
UPF1-204ENST00000596842 PHYHIPQ92561 330 aa13.78□□□□□ -0.2
UPF1-204ENST00000596842 TBL1XR1Q9BZK7 514 aa13.78□□□□□ -0.2
UPF1-204ENST00000596842 CHRDQ9H2X0 955 aa13.78□□□□□ -0.2
UPF1-204ENST00000596842 UNKLQ9H9P5 680 aaKnown RBP13.78□□□□□ -0.2
UPF1-204ENST00000596842 TMEM200CA6NKL6 621 aa13.77□□□□□ -0.2
UPF1-204ENST00000596842 TMEM212A6NML5 194 aa13.77□□□□□ -0.2
UPF1-204ENST00000596842 MFGE8Q08431 387 aaPredicted RBP13.77□□□□□ -0.2
UPF1-204ENST00000596842 RBM39Q14498 530 aaKnown RBP13.77□□□□□ -0.2
UPF1-204ENST00000596842 OR52W1Q6IF63 320 aa13.77□□□□□ -0.2
UPF1-204ENST00000596842 OR52H1Q8NGJ2 320 aa13.77□□□□□ -0.2
UPF1-204ENST00000596842 OR1J4Q8NGS1 313 aa13.77□□□□□ -0.2
UPF1-204ENST00000596842 DCBLD2Q96PD2 775 aa13.77□□□□□ -0.2
UPF1-204ENST00000596842 LMF2Q9BU23 707 aaKnown RBP13.77□□□□□ -0.2
UPF1-204ENST00000596842 REG4Q9BYZ8 158 aa13.77□□□□□ -0.2
UPF1-204ENST00000596842 NKX6-2Q9C056 277 aaPredicted RBP13.77□□□□□ -0.2
UPF1-204ENST00000596842 GLS2Q9UI32 602 aa13.77□□□□□ -0.2
UPF1-204ENST00000596842 ETV7Q9Y603 341 aa13.77□□□□□ -0.2
UPF1-204ENST00000596842 AUP1Q9Y679 476 aa13.77□□□□□ -0.2
UPF1-204ENST00000596842 A6NCN8 305 aa13.77□□□□□ -0.21
UPF1-204ENST00000596842 C1orf196B1AJZ1 125 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms