RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 ZBTB46Q86UZ6 589 aa12.99□□□□□ -0.33
UPF1-202ENST00000594243 ATG16L2Q8NAA4 619 aa12.99□□□□□ -0.33
UPF1-202ENST00000594243 NPEPL1Q8NDH3 523 aa12.99□□□□□ -0.33
UPF1-202ENST00000594243 CPEB3Q8NE35 698 aaKnown RBP12.99□□□□□ -0.33
UPF1-202ENST00000594243 SDR9C7Q8NEX9 313 aa12.99□□□□□ -0.33
UPF1-202ENST00000594243 OR5K1Q8NHB7 308 aa12.99□□□□□ -0.33
UPF1-202ENST00000594243 DNAJC9Q8WXX5 260 aa12.99□□□□□ -0.33
UPF1-202ENST00000594243 FOXN4Q96NZ1 517 aa12.99□□□□□ -0.33
UPF1-202ENST00000594243 TSSK2Q96PF2 358 aa12.99□□□□□ -0.33
UPF1-202ENST00000594243 OR2H1Q9GZK4 316 aa12.99□□□□□ -0.33
UPF1-202ENST00000594243 RACGAP1Q9H0H5 632 aa12.99□□□□□ -0.33
UPF1-202ENST00000594243 EMC7Q9NPA0 242 aa12.99□□□□□ -0.33
UPF1-202ENST00000594243 REV1Q9UBZ9 1251 aa12.99□□□□□ -0.33
UPF1-202ENST00000594243 CMAHPQ9Y471 501 aa12.99□□□□□ -0.33
UPF1-202ENST00000594243 ANKRD17O75179 2603 aaKnown RBP12.98□□□□□ -0.33
UPF1-202ENST00000594243 IGLV1-36A0A0B4J1U3 117 aa12.98□□□□□ -0.33
UPF1-202ENST00000594243 G3V2T6 193 aa12.98□□□□□ -0.33
UPF1-202ENST00000594243 DCTN6O00399 190 aa12.98□□□□□ -0.33
UPF1-202ENST00000594243 IFNGP01579 166 aa12.98□□□□□ -0.33
UPF1-202ENST00000594243 APEX1P27695 318 aaKnown RBP12.98□□□□□ -0.33
UPF1-202ENST00000594243 GDI2P50395 445 aaKnown RBP12.98□□□□□ -0.33
UPF1-202ENST00000594243 ACTR3P61158 418 aa12.98□□□□□ -0.33
UPF1-202ENST00000594243 RPS23P62266 143 aaKnown RBP12.98□□□□□ -0.33
UPF1-202ENST00000594243 SNRPD2P62316 118 aaKnown RBP12.98□□□□□ -0.33
UPF1-202ENST00000594243 AQP6Q13520 282 aa12.98□□□□□ -0.33
UPF1-202ENST00000594243 RAB35Q15286 201 aa12.98□□□□□ -0.33
UPF1-202ENST00000594243 EFNB3Q15768 340 aa12.98□□□□□ -0.33
UPF1-202ENST00000594243 SWI5Q1ZZU3 235 aa12.98□□□□□ -0.33
UPF1-202ENST00000594243 MST1LQ2TV78 715 aa12.98□□□□□ -0.33
UPF1-202ENST00000594243 SLC36A3Q495N2 470 aa12.98□□□□□ -0.33
UPF1-202ENST00000594243 Q5PR19 223 aa12.98□□□□□ -0.33
UPF1-202ENST00000594243 ZNF362Q5T0B9 420 aaPredicted RBP12.98□□□□□ -0.33
UPF1-202ENST00000594243 UNQ6126/PRO20091Q6UXV3 157 aa12.98□□□□□ -0.33
UPF1-202ENST00000594243 HIPK1Q86Z02 1210 aa12.98□□□□□ -0.33
UPF1-202ENST00000594243 TGIF2LYQ8IUE0 185 aa12.98□□□□□ -0.33
UPF1-202ENST00000594243 HS3ST5Q8IZT8 346 aa12.98□□□□□ -0.33
UPF1-202ENST00000594243 OR2T4Q8NH00 348 aa12.98□□□□□ -0.33
UPF1-202ENST00000594243 AKR7LQ8NHP1 331 aa12.98□□□□□ -0.33
UPF1-202ENST00000594243 C11orf40Q8WZ69 217 aa12.98□□□□□ -0.33
UPF1-202ENST00000594243 RAB3IPQ96QF0 476 aaPredicted RBP12.98□□□□□ -0.33
UPF1-202ENST00000594243 DDOQ99489 341 aa12.98□□□□□ -0.33
UPF1-202ENST00000594243 CACNG6Q9BXT2 260 aa12.98□□□□□ -0.33
UPF1-202ENST00000594243 BARX1Q9HBU1 254 aaPredicted RBP12.98□□□□□ -0.33
UPF1-202ENST00000594243 KIF17Q9P2E2 1029 aa12.98□□□□□ -0.33
UPF1-202ENST00000594243 EIF3KQ9UBQ5 218 aaKnown RBP12.98□□□□□ -0.33
UPF1-202ENST00000594243 PRR14LQ5THK1 2151 aa12.97□□□□□ -0.33
UPF1-202ENST00000594243 HRNRQ86YZ3 2850 aaPredicted RBP12.97□□□□□ -0.33
UPF1-202ENST00000594243 SPG11Q96JI7 2443 aa12.97□□□□□ -0.33
UPF1-202ENST00000594243 H7C417 338 aa12.97□□□□□ -0.33
UPF1-202ENST00000594243 MPZL1O95297 269 aa12.97□□□□□ -0.33
UPF1-202ENST00000594243 COX5BP10606 129 aa12.97□□□□□ -0.33
UPF1-202ENST00000594243 CCL2P13500 99 aa12.97□□□□□ -0.33
UPF1-202ENST00000594243 CCNOP22674 350 aa12.97□□□□□ -0.33
UPF1-202ENST00000594243 POU1F1P28069 291 aa12.97□□□□□ -0.33
UPF1-202ENST00000594243 PCSK6P29122 969 aa12.97□□□□□ -0.33
UPF1-202ENST00000594243 EVX1P49640 407 aa12.97□□□□□ -0.33
UPF1-202ENST00000594243 UCP2P55851 309 aa12.97□□□□□ -0.33
UPF1-202ENST00000594243 SLC27A4Q6P1M0 643 aa12.97□□□□□ -0.33
UPF1-202ENST00000594243 YTHDF3Q7Z739 585 aaKnown RBP12.97□□□□□ -0.33
UPF1-202ENST00000594243 ZDHHC13Q8IUH4 622 aa12.97□□□□□ -0.33
UPF1-202ENST00000594243 C1orf174Q8IYL3 243 aa12.97□□□□□ -0.33
UPF1-202ENST00000594243 SLC37A3Q8NCC5 494 aa12.97□□□□□ -0.33
UPF1-202ENST00000594243 OR10H5Q8NGA6 315 aa12.97□□□□□ -0.33
UPF1-202ENST00000594243 OR4Q3Q8NH05 313 aa12.97□□□□□ -0.33
UPF1-202ENST00000594243 LRTOMTQ8WZ04 291 aa12.97□□□□□ -0.33
UPF1-202ENST00000594243 POM121L2Q96KW2 1035 aa12.97□□□□□ -0.33
UPF1-202ENST00000594243 CDADC1Q9BWV3 514 aa12.97□□□□□ -0.33
UPF1-202ENST00000594243 TEX12Q9BXU0 123 aa12.97□□□□□ -0.33
UPF1-202ENST00000594243 BCL2L14Q9BZR8 327 aa12.97□□□□□ -0.33
UPF1-202ENST00000594243 WNT5BQ9H1J7 359 aa12.97□□□□□ -0.33
UPF1-202ENST00000594243 PLK3Q9H4B4 646 aa12.97□□□□□ -0.33
UPF1-202ENST00000594243 NDRG4Q9ULP0 352 aaKnown RBP12.97□□□□□ -0.33
UPF1-202ENST00000594243 ALPK2Q86TB3 2170 aa12.97□□□□□ -0.33
UPF1-202ENST00000594243 DSCAMO60469 2012 aa12.96□□□□□ -0.33
UPF1-202ENST00000594243 C5orf49A4QMS7 147 aa12.96□□□□□ -0.33
UPF1-202ENST00000594243 RIIAD1A6NNX1 92 aa12.96□□□□□ -0.33
UPF1-202ENST00000594243 SGCEO43556 437 aa12.96□□□□□ -0.33
UPF1-202ENST00000594243 HLA-DQA2P01906 255 aa12.96□□□□□ -0.33
UPF1-202ENST00000594243 GAAP10253 952 aa12.96□□□□□ -0.33
UPF1-202ENST00000594243 ZNF3P17036 446 aa12.96□□□□□ -0.33
UPF1-202ENST00000594243 GRK5P34947 590 aa12.96□□□□□ -0.33
UPF1-202ENST00000594243 TEKQ02763 1124 aa12.96□□□□□ -0.33
UPF1-202ENST00000594243 KPNB1Q14974 876 aaKnown RBP12.96□□□□□ -0.33
UPF1-202ENST00000594243 ZNF774Q6NX45 483 aa12.96□□□□□ -0.33
UPF1-202ENST00000594243 ARL9Q6T311 187 aa12.96□□□□□ -0.33
UPF1-202ENST00000594243 SVOPLQ8N434 492 aa12.96□□□□□ -0.33
UPF1-202ENST00000594243 CYB561A3Q8NBI2 242 aa12.96□□□□□ -0.33
UPF1-202ENST00000594243 GJC3Q8NFK1 279 aa12.96□□□□□ -0.33
UPF1-202ENST00000594243 MRPL24Q96A35 216 aaKnown RBP12.96□□□□□ -0.33
UPF1-202ENST00000594243 RBM4Q9BWF3 364 aaKnown RBP12.96□□□□□ -0.33
UPF1-202ENST00000594243 FN3KQ9H479 309 aa12.96□□□□□ -0.33
UPF1-202ENST00000594243 PAPOLBQ9NRJ5 636 aaKnown RBP12.96□□□□□ -0.33
UPF1-202ENST00000594243 CMC2Q9NRP2 79 aa12.96□□□□□ -0.33
UPF1-202ENST00000594243 ASH2LQ9UBL3 628 aa12.96□□□□□ -0.33
UPF1-202ENST00000594243 POLR1DQ9Y2S0 133 aa12.96□□□□□ -0.33
UPF1-202ENST00000594243 ABCA4P78363 2273 aa12.95□□□□□ -0.34
UPF1-202ENST00000594243 LOC100509620A0A075B734 347 aa12.95□□□□□ -0.34
UPF1-202ENST00000594243 FAM171A2A8MVW0 826 aa12.95□□□□□ -0.34
UPF1-202ENST00000594243 GPRIN2O60269 458 aa12.95□□□□□ -0.34
UPF1-202ENST00000594243 GPANK1O95872 356 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms